Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0020837

Physical Location & Seq

Genomic Coordinates Reverse (-)

1672737 .. 1675736

Gene Structure 3000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02240.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGAAGCATTTGGTTGTGATGTTCTTCGGGGCTCTGCTGTTCATCTTCCAGAACCATGGAGTTTTAGCGGAAGACGGGTTTATGAAAACCAGAGGAGTGCAGCTTGTGCTGAATGGAGTTCCGTACTATGGACACGGCTTCAATGCCTACTGGTTGATGTACATGGGGACCGACCCTTCCGAGAGGGTGAAAGTTTCGTCTGCCCTCCGAGAGGCGAAGGAACATGGGCTCACAATTGCAAGGACTTGGGCTTTCGCCGATGGCGGATACAGAGCTCTGCAGACCTCTCCGGGGTCGTACGACGAGCGAACTTTTCGGGTAAGTGGGTTGGATTTTGTGATATCTGAGGCAAAAAAGAATGGGATCAAGGTGATACTGAGTTTGGTGAACAACTATTACAACTATGGAGGCAAGAAACAGTATGTGGAGTGGGCTAGAAGCCAAGGCCAATCTCTATCTTCTGAAGATGATTTCTATACCAACTTTCTCGTGAAGGGATTTTACAAAAATCATATCAAGACTGTTCTTACGAGGATCAACACTCTGACTGGAGTTGCTTACAAAGATGAACCAACCATAATGGCTTGGGAGCTTATGAATGAGCCAAGATGCACTTCAGATCCATCTGGAAAAACCATTCAGGCTTGGATAACGGAAATGGCGTCTTACTTGAAATCCATAGATGGAAATCATTTGCTAGAAGTTGGCCTTGAAGGGTTTTATGGATCATCAAATCCGAAAAAAAATCCGAATAACTATCCAATTGGAACTGATTTCATTGCGAATAATCAGATCCCTGACATTGACTTTGCCACTGTCCACGCATATCCCGATCAATGGTTAACCGGGTCAAGTTATGAAGATCAAGTTTCTTTTTTGAACAGTTGGGTCAGTGGTCACATCCAGGATGCACAAAACATTCTGAAGAAGCCAGTTCTGTTTGCGGAGTTTGGAAGGTCTTTGAAAGAGTCGGGTTATACCACAAGCCAGCGTGACCGGATGTTCACTGTAGTCTACTCGGGTATCTACTCGTCGGCTAGGGGTGGAGGTGCTGCCGTTGGCGGCTTATTCTGGCAACTTCTGGCCGAAGGAATGGACAATTTCCAAGACGGGTATGGGGTTGTGTTGAGCGAGAGCTCCTCGACAGTTGGTTTGATTGCCGAGGAGTCTCGGAAGCTTAATGAGATTCGGAAGAAGTATGCCAGGTTGAGAAACATCGAGAAGTGGAAGCGAGCGAGGGAAATTGGAAGGGATCGGTTCTGGTCTGGGAATAAGGCCAATGGTACAGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005623 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009845 GO:0009900 GO:0009987 GO:0010047 GO:0010154 GO:0010412 GO:0015923 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044464 GO:0045229 GO:0046355 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090351 GO:1901575 GO:1990059

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

432

Amino Acids

48.51

Weight (kDa)

8.57

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020837)

Species	Orthologous Gene IDs
malus_domestica	MD08G1028100.v1.1 MD15G1024000.v1.1
prunus_persica	Prupe.1G376300_v2.0.a1
pyrus_communis	pycom08g02240 pycom15g02060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1014
AciI	CCGC	4 cut(s)	68, 264, 944, 1062
AclWI	GGATC	6 cut(s)	371, 542, 614, 733, 787, 1260
AcoI	YGGCCR	1 cut(s)	1083
AcuI	CTGAAG	3 cut(s)	483, 600, 944
AcyI	GRCGYC	1 cut(s)	662
AfaI	GTAC	4 cut(s)	125, 161, 299, 1285
AfiI	CCNNNNNNNGG	4 cut(s)	128, 211, 291, 837
AgsI	TTSAA	5 cut(s)	142, 673, 713, 880, 964
AjnI	CCWGG	2 cut(s)	903, 1202
AjuI	GAANNNNNNNTTGG	2 cut(s)	598, 630
AluBI	AGCT	5 cut(s)	103, 275, 592, 1137, 1177
AluI	AGCT	5 cut(s)	103, 275, 592, 1137, 1177
Alw21I	GWGCWC	2 cut(s)	277, 1139
Alw26I	GTCTC	1 cut(s)	1173
AlwI	GGATC	6 cut(s)	371, 542, 614, 733, 787, 1260
Ama87I	CYCGRG	1 cut(s)	1018
AoxI	GGCC	4 cut(s)	445, 706, 1083, 1275
ApeKI	GCWGC	2 cut(s)	100, 1052
ArsI	GACNNNNNNTTYG	4 cut(s)	791, 823, 1135, 1167
AspS9I	GGNCC	1 cut(s)	168
AsuC2I	CCSGG	2 cut(s)	291, 847
AsuHPI	GGTGA	3 cut(s)	199, 382, 397
AvaI	CYCGRG	1 cut(s)	1018
AvaII	GGWCC	1 cut(s)	168
BaeI	ACNNNNGTAYC	2 cut(s)	1006, 1039
BanII	GRGCYC	4 cut(s)	34, 231, 277, 1139
BarI	GAAGNNNNNNTAC	2 cut(s)	485, 517
BauI	CACGAG	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	2 cut(s)	277, 1139
BbvI	GCAGC	2 cut(s)	112, 1039
BccI	CCATC	3 cut(s)	254, 631, 677
BceAI	ACGGC	2 cut(s)	151, 1040
BciT130I	CCWGG	2 cut(s)	905, 1204
BciVI	GTATCC	1 cut(s)	260
BcnI	CCSGG	2 cut(s)	291, 847
BcoDI	GTCTC	1 cut(s)	1173
BfaI	CTAG	3 cut(s)	435, 698, 1038
BfmI	CTRYAG	2 cut(s)	278, 1008
BfuI	GTATCC	1 cut(s)	260
BisI	GCNGC	3 cut(s)	101, 1053, 1063
BlsI	GCNGC	3 cut(s)	102, 1054, 1064
Bme1390I	CCNGG	4 cut(s)	291, 847, 905, 1204
Bme18I	GGWCC	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	1018
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	4 cut(s)	291, 847, 905, 1204
BmsI	GCATC	2 cut(s)	599, 898
BpiI	GAAGAC	1 cut(s)	78
BplI	GAGNNNNNCTC	2 cut(s)	1124, 1156
BpmI	CTGGAG	1 cut(s)	570
BpuMI	CCSGG	2 cut(s)	291, 847
BsaBI	GATNNNNATC	1 cut(s)	687
BsaHI	GRCGYC	1 cut(s)	662
BsaJI	CCNNGG	4 cut(s)	55, 290, 442, 1161
BsaWI	WCCGGW	1 cut(s)	996
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 211, 291, 837
Bse1I	ACTGG	3 cut(s)	155, 553, 932
Bse3DI	GCAATG	1 cut(s)	777
Bse8I	GATNNNNATC	1 cut(s)	687
BseBI	CCWGG	2 cut(s)	905, 1204
BseDI	CCNNGG	4 cut(s)	55, 290, 442, 1161
BseGI	GGATG	3 cut(s)	900, 913, 1005
BseJI	GATNNNNATC	1 cut(s)	687
BseLI	CCNNNNNNNGG	4 cut(s)	128, 211, 291, 837
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	2 cut(s)	336, 368
BseNI	ACTGG	3 cut(s)	155, 553, 932
BseRI	GAGGAG	3 cut(s)	108, 1129, 1178
BseXI	GCAGC	2 cut(s)	112, 1039
BsgI	GTGCAG	1 cut(s)	119
BshFI	GGCC	4 cut(s)	447, 708, 1085, 1277
BsiHKAI	GWGCWC	2 cut(s)	277, 1139
BsiHKCI	CYCGRG	1 cut(s)	1018
BsiSI	CCGG	3 cut(s)	290, 846, 997
BsiWI	CGTACG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	4 cut(s)	128, 211, 291, 837
BsmAI	GTCTC	1 cut(s)	1173
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	4 cut(s)	447, 708, 1085, 1277
BsoBI	CYCGRG	1 cut(s)	1018
Bsp1286I	GDGCHC	4 cut(s)	34, 231, 277, 1139
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	8 cut(s)	363, 534, 619, 725, 792, 832, 862, 1252
Bsp19I	CCATGG	1 cut(s)	55
BspACI	CCGC	4 cut(s)	68, 264, 944, 1062
BspANI	GGCC	4 cut(s)	447, 708, 1085, 1277
BspCNI	CTCAG	2 cut(s)	337, 369
BspLI	GGNNCC	1 cut(s)	169
BspMAI	CTGCAG	1 cut(s)	282
BspPI	GGATC	6 cut(s)	371, 542, 614, 733, 787, 1260
BsrDI	GCAATG	1 cut(s)	777
BsrGI	TGTACA	1 cut(s)	159
BsrI	ACTGG	3 cut(s)	155, 553, 932
BssECI	CCNNGG	4 cut(s)	55, 290, 442, 1161
BssMI	GATC	8 cut(s)	363, 534, 619, 725, 792, 832, 862, 1252
BssNI	GRCGYC	1 cut(s)	662
BssSI	CACGAG	1 cut(s)	488
BssT1I	CCWWGG	2 cut(s)	55, 442
Bst2BI	CACGAG	1 cut(s)	488
Bst2UI	CCWGG	2 cut(s)	905, 1204
Bst4CI	ACNGT	6 cut(s)	420, 523, 817, 884, 1009, 1147
BstACI	GRCGYC	1 cut(s)	662
BstAPI	GCANNNNNTGC	1 cut(s)	106
BstAUI	TGTACA	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	989, 1233
BstDEI	CTNAG	2 cut(s)	345, 377
BstDSI	CCRYGG	1 cut(s)	55
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstF5I	GGATG	3 cut(s)	900, 913, 1005
BstKTI	GATC	8 cut(s)	366, 537, 622, 728, 795, 835, 865, 1255
BstMAI	GTCTC	1 cut(s)	1173
BstMBI	GATC	8 cut(s)	363, 534, 619, 725, 792, 832, 862, 1252
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	2 cut(s)	905, 1204
BstSCI	CCNGG	4 cut(s)	289, 845, 903, 1202
BstSFI	CTRYAG	2 cut(s)	278, 1008
BstV1I	GCAGC	2 cut(s)	112, 1039
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	2 cut(s)	619, 792
BstXI	CCANNNNNNTGG	1 cut(s)	56
BstYI	RGATCY	2 cut(s)	619, 792
BsuI	GTATCC	1 cut(s)	260
BsuRI	GGCC	4 cut(s)	447, 708, 1085, 1277
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	3 cut(s)	900, 913, 1005
BtsIMutI	CAGTG	3 cut(s)	813, 898, 1005
Cac8I	GCNNGC	2 cut(s)	989, 1233
Cfr13I	GGNCC	1 cut(s)	168
CseI	GACGC	1 cut(s)	651
Csp6I	GTAC	4 cut(s)	124, 160, 298, 1284
CviAII	CATG	3 cut(s)	56, 163, 224
CviQI	GTAC	4 cut(s)	124, 160, 298, 1284
DdeI	CTNAG	2 cut(s)	345, 377
DpnI	GATC	8 cut(s)	365, 536, 621, 727, 794, 834, 864, 1254
DpnII	GATC	8 cut(s)	363, 534, 619, 725, 792, 832, 862, 1252
EaeI	YGGCCR	1 cut(s)	1083
EciI	GGCGGA	1 cut(s)	279
Ecl136II	GAGCTC	2 cut(s)	275, 1137
Eco130I	CCWWGG	2 cut(s)	55, 442
Eco24I	GRGCYC	4 cut(s)	34, 231, 277, 1139
Eco32I	GATATC	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	168
Eco53kI	GAGCTC	2 cut(s)	275, 1137
Eco57I	CTGAAG	3 cut(s)	483, 600, 944
Eco88I	CYCGRG	1 cut(s)	1018
EcoICRI	GAGCTC	2 cut(s)	275, 1137
EcoNI	CCTNNNNNAGG	1 cut(s)	209
EcoRII	CCWGG	2 cut(s)	903, 1202
EcoRV	GATATC	1 cut(s)	342
EcoT14I	CCWWGG	2 cut(s)	55, 442
EcoT38I	GRGCYC	4 cut(s)	34, 231, 277, 1139
ErhI	CCWWGG	2 cut(s)	55, 442
FaeI	CATG	3 cut(s)	59, 166, 227
FalI	AAGNNNNNCTT	4 cut(s)	598, 630, 693, 725
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	3 cut(s)	55, 162, 223
FblI	GTMKAC	1 cut(s)	1014
Fnu4HI	GCNGC	3 cut(s)	101, 1053, 1063
FokI	GGATG	3 cut(s)	887, 920, 1012
FriOI	GRGCYC	4 cut(s)	34, 231, 277, 1139
Fsp4HI	GCNGC	3 cut(s)	101, 1053, 1063
FspBI	CTAG	3 cut(s)	435, 698, 1038
GluI	GCNGC	3 cut(s)	101, 1053, 1063
GsuI	CTGGAG	1 cut(s)	570
HaeIII	GGCC	4 cut(s)	447, 708, 1085, 1277
HapII	CCGG	3 cut(s)	290, 846, 997
HgaI	GACGC	1 cut(s)	651
Hin1I	GRCGYC	1 cut(s)	662
Hin1II	CATG	3 cut(s)	59, 166, 227
HincII	GTYRAC	1 cut(s)	843
HindII	GTYRAC	1 cut(s)	843
HindIII	AAGCTT	1 cut(s)	1175
HinfI	GANTC	3 cut(s)	968, 1166, 1186
HpaI	GTTAAC	1 cut(s)	843
HpaII	CCGG	3 cut(s)	290, 846, 997
HphI	GGTGA	3 cut(s)	199, 382, 397
Hpy166II	GTNNAC	5 cut(s)	388, 820, 843, 1005, 1015
Hpy188III	TCNNGA	6 cut(s)	49, 490, 517, 627, 830, 1219
Hpy8I	GTNNAC	5 cut(s)	388, 820, 843, 1005, 1015
Hpy99I	CGWCG	2 cut(s)	305, 1036
HpyAV	CCTTC	7 cut(s)	186, 211, 487, 707, 948, 1082, 1242
HpyCH4III	ACNGT	6 cut(s)	420, 523, 817, 884, 1009, 1147
HpyCH4V	TGCA	5 cut(s)	100, 239, 280, 612, 911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	2 cut(s)	345, 377
Hsp92I	GRCGYC	1 cut(s)	662
Hsp92II	CATG	3 cut(s)	59, 166, 227
KspAI	GTTAAC	1 cut(s)	843
Kzo9I	GATC	8 cut(s)	363, 534, 619, 725, 792, 832, 862, 1252
LmnI	GCTCC	2 cut(s)	589, 1142
Lsp1109I	GCAGC	2 cut(s)	112, 1039
LweI	GCATC	2 cut(s)	599, 898
MaeI	CTAG	3 cut(s)	435, 698, 1038
MaeIII	GTNAC	2 cut(s)	896, 992
MalI	GATC	8 cut(s)	365, 536, 621, 727, 794, 834, 864, 1254
MboI	GATC	8 cut(s)	363, 534, 619, 725, 792, 832, 862, 1252
MboII	GAAGA	8 cut(s)	16, 37, 83, 450, 476, 872, 937, 1204
MfeI	CAATTG	2 cut(s)	234, 762
MflI	RGATCY	2 cut(s)	619, 792
MhlI	GDGCHC	4 cut(s)	34, 231, 277, 1139
MluCI	AATT	4 cut(s)	234, 762, 1099, 1242
MlyI	GAGTC	2 cut(s)	977, 1175
MmeI	TCCRAC	1 cut(s)	309
MseI	TTAA	2 cut(s)	842, 1179
MspI	CCGG	3 cut(s)	290, 846, 997
MspR9I	CCNGG	4 cut(s)	291, 847, 905, 1204
MunI	CAATTG	2 cut(s)	234, 762
MvaI	CCWGG	2 cut(s)	905, 1204
MwoI	GCNNNNNNNGC	1 cut(s)	106
NciI	CCSGG	2 cut(s)	291, 847
NcoI	CCATGG	1 cut(s)	55
NdeII	GATC	8 cut(s)	363, 534, 619, 725, 792, 832, 862, 1252
NlaIII	CATG	3 cut(s)	59, 166, 227
NlaIV	GGNNCC	1 cut(s)	169
NmeAIII	GCCGAG	1 cut(s)	1186
NmuCI	GTSAC	2 cut(s)	896, 992
PcsI	WCGNNNNNNNCGW	2 cut(s)	659, 828
PfeI	GAWTC	1 cut(s)	1186
Pfl23II	CGTACG	1 cut(s)	297
PfoI	TCCNGGA	1 cut(s)	903
PkrI	GCNGC	3 cut(s)	102, 1054, 1064
PleI	GAGTC	2 cut(s)	976, 1174
PpsI	GAGTC	2 cut(s)	976, 1174
Psp124BI	GAGCTC	2 cut(s)	277, 1139
Psp6I	CCWGG	2 cut(s)	903, 1202
PspGI	CCWGG	2 cut(s)	903, 1202
PspLI	CGTACG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	168
PsrI	GAACNNNNNNTAC	2 cut(s)	380, 412
PstI	CTGCAG	1 cut(s)	282
PsuI	RGATCY	2 cut(s)	619, 792
RsaI	GTAC	4 cut(s)	125, 161, 299, 1285
RsaNI	GTAC	4 cut(s)	124, 160, 298, 1284
SacI	GAGCTC	2 cut(s)	277, 1139
SaqAI	TTAA	2 cut(s)	842, 1179
SatI	GCNGC	3 cut(s)	101, 1053, 1063
Sau3AI	GATC	8 cut(s)	363, 534, 619, 725, 792, 832, 862, 1252
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	2 cut(s)	977, 1175
ScrFI	CCNGG	4 cut(s)	291, 847, 905, 1204
SduI	GDGCHC	4 cut(s)	34, 231, 277, 1139
SfaNI	GCATC	2 cut(s)	599, 898
SfcI	CTRYAG	2 cut(s)	278, 1008
SinI	GGWCC	1 cut(s)	168
Sse9I	AATT	4 cut(s)	234, 762, 1099, 1242
SsiI	CCGC	4 cut(s)	68, 264, 944, 1062
SspMI	CTAG	3 cut(s)	435, 698, 1038
SstI	GAGCTC	2 cut(s)	277, 1139
StyD4I	CCNGG	4 cut(s)	289, 845, 903, 1202
StyI	CCWWGG	2 cut(s)	55, 442
TaaI	ACNGT	6 cut(s)	420, 523, 817, 884, 1009, 1147
TaqI	TCGA	2 cut(s)	1142, 1218
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	4 cut(s)	234, 762, 1099, 1242
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	1 cut(s)	1065
TfiI	GAWTC	1 cut(s)	1186
Tru1I	TTAA	2 cut(s)	842, 1179
Tru9I	TTAA	2 cut(s)	842, 1179
TscAI	CASTG	3 cut(s)	820, 898, 1012
TseFI	GTSAC	2 cut(s)	896, 992
TseI	GCWGC	2 cut(s)	100, 1052
Tsp45I	GTSAC	2 cut(s)	896, 992
TspDTI	ATGAA	7 cut(s)	17, 31, 98, 582, 611, 766, 873
TspGWI	ACGGA	2 cut(s)	111, 668
TspRI	CASTG	3 cut(s)	820, 898, 1012
VpaK11BI	GGWCC	1 cut(s)	168
XagI	CCTNNNNNAGG	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1112
XmiI	GTMKAC	1 cut(s)	1014
XspI	CTAG	3 cut(s)	435, 698, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.