MD15G1024000.v1.1

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
1425922 .. 1428956
3035 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1024000.v1.1.491

Sequence Viewer

Length: 1290 bp
ATGAAGCATTTGGGTGTGATTTTCTTTGGGGCTCTGTTGTTCATCTTCCTGAACCATGGAGTTATAGCGGAAGATGGGTTTGTGAAGACCAGAGGAGTGCAGCTTGTTTTGAACGGAGTTCCGTACTACGGAAACGGATTCAATGCGTACTGGTTGATGTACATGGCGACTGACCCTTCTGAGAGGGAGAAAGTTTCGTCTGCCTTTCGAGAGGCTACGAAAAATGGGCTCACGATTGCAAGGACTTGGGCTTTCGCCGATGGCGGATACAGAGCTCTGCAGACCTCTCCGGGCTCCTACGATGAGAAAACTTTTCAGGGGTTGGATTTTGTGATAGCTGAGGCGAAGAAGAATGGGATCAAAGTAATGCTGAGTCTGGTTAACAACTATGACGACTTTGGAGGCAAGAAACAGTACGTGGAATGGGCAAGAAGCCAAGGCCAGTCTCTATCTTCTGAAGATGATTTCTTTACCAACTCTGTTGTTAAGGGATTTTACAAAAATCATATCAAGACTGTTCTTACGAGGATTAACACTTTGACTGGAGTTGCTTACAAAGATGAACCAACCATAATGGCTTGGGAGCTGATGAATGAGCCAAGATGCACTTCAGATCCATCTGGAAAAACCATTCAGGCTTGGATAACGGAGATGGCGTCTTACTTGAAATCCATAGATGGGAATCACTTGCTAGAAGTTGGCCTTGAAGGGTTTTATGGACCATCAAATCCGAAAACGAATCCGAACTACTATCAAATCGGAACTGATTTCTTGGCGAATAATCAGATCCCTGGCATTGATTTTGCCACTGTACACTCATATCCTGATCAATGGTTAAATGGGTCAAGTTATGAAGATCAGGTCTCTTTCTTGAACAGTTGGGTCAATGATCACATCCATGATGCACAAAACATCCTTAAGAAGCCAGTCCTCTTTGCTGAGTTTGGAAGGTCTTTGAAAGAGTCAGGTTATACCATAAACCAGCGTGACCGGATTTTCACTACAGTTTACTCGGGCATCTACTCTTCGGCTAGGGGTGGAGGTCCTGCTGTTGGCGGCTTGTTCTGGCAACTTCTGGCCCAAGGAATGGACTCTTTCCAAGACGGGTACGGGGTAGTGTTGAGTGAAAGCTCCTCGACAGTTGGTTTGATCGCTGAGGAATCTCAGAAGCTTATTAAGATTCGGAAGATGTATGCCAGGCTTAGAAACATCGAGAAGTGGAAGCGAGCCAGGGAAATTCGAAGGGATCAGTTCTGGTCCGGGAATAAGGTGAGTGGTACAGGAAACTGA

Protein Analysis

430

Amino Acids

48.13

Weight (kDa)

7.72

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GH5_mannosidase PF26410 27 - 357 5e-51 GH family 5 beta-mannosidase-like
Cellulase PF00150 61 - 330 2.7e-15 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020837)

Species Orthologous Gene IDs
malus_domestica MD08G1028100.v1.1 MD15G1024000.v1.1
prunus_persica Prupe.1G376300_v2.0.a1
pyrus_communis pycom08g02240 pycom15g02060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1087
AciI CCGC 3 cut(s) 68, 264, 1056
AclWI GGATC 4 cut(s) 365, 608, 781, 1254
AcsI RAATTY 1 cut(s) 1236
AcuI CTGAAG 2 cut(s) 477, 594
AcyI GRCGYC 1 cut(s) 656
AfaI GTAC 7 cut(s) 125, 149, 161, 416, 813, 1109, 1279
AfiI CCNNNNNNNGG 4 cut(s) 128, 678, 1052, 1087
AflII CTTAAG 1 cut(s) 917
AgsI TTSAA 6 cut(s) 112, 142, 667, 707, 874, 958
AjnI CCWGG 3 cut(s) 790, 1196, 1229
AjuI GAANNNNNNNTTGG 2 cut(s) 592, 624
AluBI AGCT 6 cut(s) 103, 275, 338, 586, 1131, 1171
AluI AGCT 6 cut(s) 103, 275, 338, 586, 1131, 1171
Alw21I GWGCWC 1 cut(s) 277
Alw26I GTCTC 2 cut(s) 450, 868
AlwI GGATC 4 cut(s) 365, 608, 781, 1254
Ama87I CYCGRG 1 cut(s) 1012
AoxI GGCC 3 cut(s) 439, 700, 1077
ApeKI GCWGC 1 cut(s) 100
ApoI RAATTY 1 cut(s) 1236
ArsI GACNNNNNNTTYG 2 cut(s) 1129, 1161
AspS9I GGNCC 4 cut(s) 719, 1043, 1078, 1257
AsuC2I CCSGG 2 cut(s) 291, 1261
AsuHPI GGTGA 1 cut(s) 1282
AsuII TTCGAA 1 cut(s) 1240
AvaI CYCGRG 1 cut(s) 1012
AvaII GGWCC 3 cut(s) 719, 1043, 1257
BanII GRGCYC 4 cut(s) 34, 231, 277, 296
BbsI GAAGAC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 277
BbvCI CCTCAGC 2 cut(s) 339, 1155
BbvI GCAGC 1 cut(s) 112
BccI CCATC 6 cut(s) 68, 254, 625, 646, 671, 730
BciT130I CCWGG 3 cut(s) 792, 1198, 1231
BciVI GTATCC 1 cut(s) 260
BclI TGATCA 2 cut(s) 826, 889
BcnI CCSGG 2 cut(s) 291, 1261
BcoDI GTCTC 2 cut(s) 450, 868
BfaI CTAG 2 cut(s) 692, 1032
BfmI CTRYAG 2 cut(s) 278, 1002
BfrI CTTAAG 1 cut(s) 917
BfuI GTATCC 1 cut(s) 260
BisI GCNGC 2 cut(s) 101, 1057
BlsI GCNGC 2 cut(s) 102, 1058
Bme1390I CCNGG 5 cut(s) 291, 792, 1198, 1231, 1261
Bme18I GGWCC 3 cut(s) 719, 1043, 1257
BmeT110I CYCGRG 1 cut(s) 1012
BmgT120I GGNCC 4 cut(s) 719, 1043, 1078, 1257
BmiI GGNNCC 1 cut(s) 295
BmrFI CCNGG 5 cut(s) 291, 792, 1198, 1231, 1261
BmsI GCATC 3 cut(s) 593, 892, 1026
BpiI GAAGAC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 564
Bpu10I CCTNAGC 2 cut(s) 339, 1155
Bpu14I TTCGAA 1 cut(s) 1240
BpuMI CCSGG 2 cut(s) 291, 1261
BsaAI YACGTR 1 cut(s) 418
BsaBI GATNNNNATC 1 cut(s) 681
BsaHI GRCGYC 1 cut(s) 656
BsaI GGTCTC 1 cut(s) 868
BsaJI CCNNGG 5 cut(s) 55, 436, 790, 1081, 1230
BsaWI WCCGGW 1 cut(s) 990
BsaXI ACNNNNNCTCC 2 cut(s) 641, 671
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 678, 1052, 1087
Bse1I ACTGG 4 cut(s) 155, 442, 547, 926
Bse8I GATNNNNATC 1 cut(s) 681
BseBI CCWGG 3 cut(s) 792, 1198, 1231
BseDI CCNNGG 5 cut(s) 55, 436, 790, 1081, 1230
BseGI GGATG 2 cut(s) 894, 912
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 4 cut(s) 128, 678, 1052, 1087
BseMII CTCAG 6 cut(s) 171, 330, 362, 930, 1146, 1178
BseNI ACTGG 4 cut(s) 155, 442, 547, 926
BseRI GAGGAG 2 cut(s) 108, 1123
BseXI GCAGC 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 119
BshFI GGCC 3 cut(s) 441, 702, 1079
BsiHKAI GWGCWC 1 cut(s) 277
BsiHKCI CYCGRG 1 cut(s) 1012
BsiSI CCGG 3 cut(s) 290, 991, 1260
BslI CCNNNNNNNGG 4 cut(s) 128, 678, 1052, 1087
BsmAI GTCTC 2 cut(s) 450, 868
BsnI GGCC 3 cut(s) 441, 702, 1079
Bso31I GGTCTC 1 cut(s) 868
BsoBI CYCGRG 1 cut(s) 1012
Bsp119I TTCGAA 1 cut(s) 1240
Bsp1286I GDGCHC 4 cut(s) 34, 231, 277, 296
Bsp1407I TGTACA 2 cut(s) 159, 811
Bsp143I GATC 8 cut(s) 357, 613, 786, 826, 856, 889, 1149, 1246
Bsp19I CCATGG 1 cut(s) 55
BspACI CCGC 3 cut(s) 68, 264, 1056
BspANI GGCC 3 cut(s) 441, 702, 1079
BspCNI CTCAG 6 cut(s) 172, 331, 363, 931, 1147, 1177
BspLI GGNNCC 1 cut(s) 295
BspMAI CTGCAG 1 cut(s) 282
BspPI GGATC 4 cut(s) 365, 608, 781, 1254
BspT104I TTCGAA 1 cut(s) 1240
BspTI CTTAAG 1 cut(s) 917
BspTNI GGTCTC 1 cut(s) 868
BsrGI TGTACA 2 cut(s) 159, 811
BsrI ACTGG 4 cut(s) 155, 442, 547, 926
BssECI CCNNGG 5 cut(s) 55, 436, 790, 1081, 1230
BssMI GATC 8 cut(s) 357, 613, 786, 826, 856, 889, 1149, 1246
BssNI GRCGYC 1 cut(s) 656
BssT1I CCWWGG 3 cut(s) 55, 436, 1081
Bst2UI CCWGG 3 cut(s) 792, 1198, 1231
Bst4CI ACNGT 6 cut(s) 414, 517, 811, 878, 1006, 1141
Bst6I CTCTTC 1 cut(s) 1030
BstACI GRCGYC 1 cut(s) 656
BstAFI CTTAAG 1 cut(s) 917
BstAUI TGTACA 2 cut(s) 159, 811
BstBAI YACGTR 1 cut(s) 418
BstBI TTCGAA 1 cut(s) 1240
BstC8I GCNNGC 1 cut(s) 1227
BstDEI CTNAG 7 cut(s) 180, 339, 371, 939, 1155, 1164, 1202
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 2 cut(s) 894, 912
BstKTI GATC 8 cut(s) 360, 616, 789, 829, 859, 892, 1152, 1249
BstMAI GTCTC 2 cut(s) 450, 868
BstMBI GATC 8 cut(s) 357, 613, 786, 826, 856, 889, 1149, 1246
BstNI CCWGG 3 cut(s) 792, 1198, 1231
BstSCI CCNGG 5 cut(s) 289, 790, 1196, 1229, 1259
BstSFI CTRYAG 2 cut(s) 278, 1002
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 2 cut(s) 613, 786
BstYI RGATCY 2 cut(s) 613, 786
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 3 cut(s) 441, 702, 1079
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 2 cut(s) 894, 912
BtsIMutI CAGTG 1 cut(s) 807
Cac8I GCNNGC 1 cut(s) 1227
Cfr13I GGNCC 4 cut(s) 719, 1043, 1078, 1257
CseI GACGC 1 cut(s) 645
Csp6I GTAC 7 cut(s) 124, 148, 160, 415, 812, 1108, 1278
CviAII CATG 3 cut(s) 56, 163, 899
CviQI GTAC 7 cut(s) 124, 148, 160, 415, 812, 1108, 1278
DdeI CTNAG 7 cut(s) 180, 339, 371, 939, 1155, 1164, 1202
DpnI GATC 8 cut(s) 359, 615, 788, 828, 858, 891, 1151, 1248
DpnII GATC 8 cut(s) 357, 613, 786, 826, 856, 889, 1149, 1246
Eam1104I CTCTTC 1 cut(s) 1030
EarI CTCTTC 1 cut(s) 1030
EciI GGCGGA 1 cut(s) 279
Ecl136II GAGCTC 1 cut(s) 275
Eco130I CCWWGG 3 cut(s) 55, 436, 1081
Eco24I GRGCYC 4 cut(s) 34, 231, 277, 296
Eco31I GGTCTC 1 cut(s) 868
Eco47I GGWCC 3 cut(s) 719, 1043, 1257
Eco53kI GAGCTC 1 cut(s) 275
Eco57I CTGAAG 2 cut(s) 477, 594
Eco88I CYCGRG 1 cut(s) 1012
EcoICRI GAGCTC 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 1043
EcoRII CCWGG 3 cut(s) 790, 1196, 1229
EcoT14I CCWWGG 3 cut(s) 55, 436, 1081
EcoT38I GRGCYC 4 cut(s) 34, 231, 277, 296
ErhI CCWWGG 3 cut(s) 55, 436, 1081
FaeI CATG 3 cut(s) 59, 166, 902
FalI AAGNNNNNCTT 4 cut(s) 592, 624, 687, 719
FatI CATG 3 cut(s) 55, 162, 898
FbaI TGATCA 2 cut(s) 826, 889
Fnu4HI GCNGC 2 cut(s) 101, 1057
FokI GGATG 2 cut(s) 881, 899
FriOI GRGCYC 4 cut(s) 34, 231, 277, 296
Fsp4HI GCNGC 2 cut(s) 101, 1057
FspBI CTAG 2 cut(s) 692, 1032
GluI GCNGC 2 cut(s) 101, 1057
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 3 cut(s) 441, 702, 1079
HapII CCGG 3 cut(s) 290, 991, 1260
HgaI GACGC 1 cut(s) 645
Hin1I GRCGYC 1 cut(s) 656
Hin1II CATG 3 cut(s) 59, 166, 902
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 1169
HinfI GANTC 8 cut(s) 138, 373, 682, 739, 962, 1091, 1160, 1180
HpaI GTTAAC 1 cut(s) 382
HpaII CCGG 3 cut(s) 290, 991, 1260
HphI GGTGA 1 cut(s) 1282
Hpy166II GTNNAC 3 cut(s) 382, 814, 1009
Hpy188I TCNGA 9 cut(s) 181, 457, 613, 732, 744, 761, 786, 1167, 1185
Hpy188III TCNNGA 8 cut(s) 49, 209, 232, 511, 621, 824, 871, 1213
Hpy8I GTNNAC 3 cut(s) 382, 814, 1009
HpyAV CCTTC 4 cut(s) 186, 701, 942, 1236
HpyCH4III ACNGT 6 cut(s) 414, 517, 811, 878, 1006, 1141
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 5 cut(s) 100, 239, 280, 606, 905
HpyF3I CTNAG 7 cut(s) 180, 339, 371, 939, 1155, 1164, 1202
HpySE526I ACGT 1 cut(s) 417
Hsp92I GRCGYC 1 cut(s) 656
Hsp92II CATG 3 cut(s) 59, 166, 902
Ksp22I TGATCA 2 cut(s) 826, 889
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 8 cut(s) 357, 613, 786, 826, 856, 889, 1149, 1246
LmnI GCTCC 3 cut(s) 299, 583, 1136
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 3 cut(s) 593, 892, 1026
MaeI CTAG 2 cut(s) 692, 1032
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 1 cut(s) 986
MalI GATC 8 cut(s) 359, 615, 788, 828, 858, 891, 1151, 1248
MboI GATC 8 cut(s) 357, 613, 786, 826, 856, 889, 1149, 1246
MflI RGATCY 2 cut(s) 613, 786
MhlI GDGCHC 4 cut(s) 34, 231, 277, 296
MluCI AATT 1 cut(s) 1236
MlyI GAGTC 3 cut(s) 382, 971, 1085
MmeI TCCRAC 1 cut(s) 303
MseI TTAA 6 cut(s) 381, 486, 531, 836, 918, 1176
MslI CAYNNNNRTG 2 cut(s) 12, 897
MspCI CTTAAG 1 cut(s) 917
MspI CCGG 3 cut(s) 290, 991, 1260
MspR9I CCNGG 5 cut(s) 291, 792, 1198, 1231, 1261
MvaI CCWGG 3 cut(s) 792, 1198, 1231
NciI CCSGG 2 cut(s) 291, 1261
NcoI CCATGG 1 cut(s) 55
NdeII GATC 8 cut(s) 357, 613, 786, 826, 856, 889, 1149, 1246
NlaIII CATG 3 cut(s) 59, 166, 902
NlaIV GGNNCC 1 cut(s) 295
NmuCI GTSAC 1 cut(s) 986
NspV TTCGAA 1 cut(s) 1240
PcsI WCGNNNNNNNCGW 1 cut(s) 653
PfeI GAWTC 5 cut(s) 138, 682, 739, 1160, 1180
PflMI CCANNNNNTGG 1 cut(s) 1087
PfoI TCCNGGA 1 cut(s) 1259
PkrI GCNGC 2 cut(s) 102, 1058
PleI GAGTC 3 cut(s) 381, 970, 1085
PpsI GAGTC 3 cut(s) 381, 970, 1085
Ppu21I YACGTR 1 cut(s) 418
PpuMI RGGWCCY 1 cut(s) 1043
Psp124BI GAGCTC 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 1043
Psp6I CCWGG 3 cut(s) 790, 1196, 1229
PspGI CCWGG 3 cut(s) 790, 1196, 1229
PspN4I GGNNCC 1 cut(s) 295
PspPI GGNCC 4 cut(s) 719, 1043, 1078, 1257
PspPPI RGGWCCY 1 cut(s) 1043
PstI CTGCAG 1 cut(s) 282
PsuI RGATCY 2 cut(s) 613, 786
RsaI GTAC 7 cut(s) 125, 149, 161, 416, 813, 1109, 1279
RsaNI GTAC 7 cut(s) 124, 148, 160, 415, 812, 1108, 1278
RseI CAYNNNNRTG 2 cut(s) 12, 897
SacI GAGCTC 1 cut(s) 277
SaqAI TTAA 6 cut(s) 381, 486, 531, 836, 918, 1176
SatI GCNGC 2 cut(s) 101, 1057
Sau3AI GATC 8 cut(s) 357, 613, 786, 826, 856, 889, 1149, 1246
Sau96I GGNCC 4 cut(s) 719, 1043, 1078, 1257
SchI GAGTC 3 cut(s) 382, 971, 1085
ScrFI CCNGG 5 cut(s) 291, 792, 1198, 1231, 1261
SduI GDGCHC 4 cut(s) 34, 231, 277, 296
SfaNI GCATC 3 cut(s) 593, 892, 1026
SfcI CTRYAG 2 cut(s) 278, 1002
SfuI TTCGAA 1 cut(s) 1240
SinI GGWCC 3 cut(s) 719, 1043, 1257
SmiMI CAYNNNNRTG 2 cut(s) 12, 897
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
Sse9I AATT 1 cut(s) 1236
SsiI CCGC 3 cut(s) 68, 264, 1056
SspMI CTAG 2 cut(s) 692, 1032
SstI GAGCTC 1 cut(s) 277
StyD4I CCNGG 5 cut(s) 289, 790, 1196, 1229, 1259
StyI CCWWGG 3 cut(s) 55, 436, 1081
TaaI ACNGT 6 cut(s) 414, 517, 811, 878, 1006, 1141
TaiI ACGT 1 cut(s) 420
TaqI TCGA 4 cut(s) 208, 1136, 1212, 1240
TasI AATT 1 cut(s) 1236
TatI WGTACW 2 cut(s) 159, 811
TauI GCSGC 1 cut(s) 1059
TfiI GAWTC 5 cut(s) 138, 682, 739, 1160, 1180
Tru1I TTAA 6 cut(s) 381, 486, 531, 836, 918, 1176
Tru9I TTAA 6 cut(s) 381, 486, 531, 836, 918, 1176
TscAI CASTG 1 cut(s) 814
TseFI GTSAC 1 cut(s) 986
TseI GCWGC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 986
TspDTI ATGAA 5 cut(s) 17, 31, 576, 605, 867
TspGWI ACGGA 5 cut(s) 111, 129, 144, 150, 662
TspRI CASTG 1 cut(s) 814
Van91I CCANNNNNTGG 1 cut(s) 1087
Vha464I CTTAAG 1 cut(s) 917
VpaK11BI GGWCC 3 cut(s) 719, 1043, 1257
XapI RAATTY 1 cut(s) 1236
XspI CTAG 2 cut(s) 692, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.