Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0020837

Physical Location & Seq

Genomic Coordinates Reverse (-)

34099234 .. 34102112

Gene Structure 2879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G376300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGAAGCGTTGGGGTGTGGTTTTCTTTGTTCTTCTGCTTATCCAAAGTCCGGGAATTTTGAAACCAGTAGAAGCAGAAGATGGGTTTGTGAAAACCAGAGGACTGCAACTTGTCTTGAATGGAGTCCCTTACTATGCGCATGGGTTCAATGCCTACTGGTTGATGTACGTGGCCACTGACCCATCCCAGAGAGACAAAATTTTATCTGCCTTTCAAGAGGCTACAAAACACGGCCTCTCCATAGCAAGAACTTGGGCTTTCAGCGATGGCGGTTACAGGCCTTTACAGTCTTCTCCCGGCTCCTACAATGAGCAAACTTTCCAGGGTTTGGATTTTGCGATATCTGAGGCGAAGAAGCATGGGATTAAGCTGATACTAAGTTTGGTGAATAACTATGAGAACTTTGGAGGCAGAAAACAGTATGTGGACTGGGCTAGAAGCCAAGGGCAGTCTATAACATCGGAGGACGATTTCTATACCAATTCTGTAGTGAAGGATTTTTACAGAAATCATATCAAGACTGTACTTACGAGGACAAACAGTCTGACTGGAGTTGCTTACAAAGATGAACCAACCATAATGGCTTGGGAGCTGATGAATGAGCCAAGATGCACTTCAGACCCATCAGGAAAAACCATTCAGGCGTGGATAACCGAGATGGCATCTTACTTGAAATCTATAGATGGAAATCACTTGCTAGAAGTTGGTCTTGAAGGGTTTTATGGAGCATCAAAGCAGCAAACTAATCCAAATTACTTTCAAGTGGGAACAGATTTTATTGCAAATAATCAGATCCCCGGCATTGACTTTGCTACTGTTCACTCATATCCTGACCAATGGTTATCTGGGTCAAGTTATGAAGACCAAGTCGCTTTCTTGAACAATTGGGTGAATGATCATATCCAAGATGCACAAAAAATACTCAAGAAGCCAATCCTCTTTGCTGAGTTTGGAAGGTCTTTGAAAGAGTCAGGTTACACCACAAACCAACGGGACCGAATTTTCACCACAGTCTACTCGGCCATCTACTCGTCAGCTAGGGGTGGAGGTGCAGCTGTTGGTGGCTTATTCTGGCAGCTTCTGGCTGAAGGAATGGATTCTTTCCAAGACGGGTACGGCGTTGTGTTGAGTGAGAGCTCCTCAACAGTTAGTTTGATTTCTGAGGAGTCACAGAGGCTTATTAAGATTCGGAAGATGTATGCCAGGCTGAGAAACATTGAGAAGTGGAAGCGAGCAAGGGAGATTAGAAGGGCTCAACGGTGGTCTGGGAACAAGCTCAATGATACAGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005623 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009845 GO:0009900 GO:0009987 GO:0010047 GO:0010154 GO:0010412 GO:0015923 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044464 GO:0045229 GO:0046355 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090351 GO:1901575 GO:1990059

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

432

Amino Acids

48.7

Weight (kDa)

8.61

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020837)

Species	Orthologous Gene IDs
malus_domestica	MD08G1028100.v1.1 MD15G1024000.v1.1
prunus_persica	Prupe.1G376300_v2.0.a1
pyrus_communis	pycom08g02240 pycom15g02060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	138
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	1014
AciI	CCGC	1 cut(s)	270
AclWI	GGATC	1 cut(s)	787
AcoI	YGGCCR	2 cut(s)	171, 1020
AcsI	RAATTY	3 cut(s)	54, 198, 999
AcuI	CTGAAG	2 cut(s)	600, 1107
AfaI	GTAC	3 cut(s)	167, 525, 1115
AfiI	CCNNNNNNNGG	2 cut(s)	49, 328
AgsI	TTSAA	9 cut(s)	61, 118, 148, 215, 673, 713, 761, 880, 964
AhdI	GACNNNNNGTC	1 cut(s)	540
AjnI	CCWGG	2 cut(s)	321, 1202
AjuI	GAANNNNNNNTTGG	2 cut(s)	598, 630
AluBI	AGCT	7 cut(s)	370, 592, 1037, 1055, 1078, 1137, 1276
AluI	AGCT	7 cut(s)	370, 592, 1037, 1055, 1078, 1137, 1276
Alw21I	GWGCWC	1 cut(s)	1139
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	787
AlwNI	CAGNNNCTG	1 cut(s)	1081
AoxI	GGCC	4 cut(s)	171, 232, 278, 1020
ApeKI	GCWGC	3 cut(s)	736, 1052, 1075
ApoI	RAATTY	3 cut(s)	54, 198, 999
Asp700I	GAANNNNTTC	1 cut(s)	1096
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	994
AsuC2I	CCSGG	3 cut(s)	51, 297, 798
AsuHPI	GGTGA	3 cut(s)	397, 901, 997
AvaII	GGWCC	1 cut(s)	994
BalI	TGGCCA	1 cut(s)	173
BanII	GRGCYC	2 cut(s)	1139, 1255
BarI	GAAGNNNNNNTAC	2 cut(s)	485, 517
BbsI	GAAGAC	2 cut(s)	282, 867
Bbv12I	GWGCWC	1 cut(s)	1139
BbvI	GCAGC	3 cut(s)	748, 1064, 1087
BccI	CCATC	7 cut(s)	74, 190, 260, 631, 652, 677, 1031
BceAI	ACGGC	2 cut(s)	247, 1132
BciT130I	CCWGG	2 cut(s)	323, 1204
BclI	TGATCA	1 cut(s)	895
BcnI	CCSGG	3 cut(s)	51, 297, 798
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	3 cut(s)	435, 698, 1038
BfmI	CTRYAG	2 cut(s)	486, 678
BisI	GCNGC	3 cut(s)	737, 1053, 1076
BlsI	GCNGC	3 cut(s)	738, 1054, 1077
Bme1390I	CCNGG	5 cut(s)	51, 297, 323, 798, 1204
Bme18I	GGWCC	1 cut(s)	994
BmeRI	GACNNNNNGTC	1 cut(s)	540
BmgT120I	GGNCC	1 cut(s)	994
BmiI	GGNNCC	2 cut(s)	301, 995
BmrFI	CCNGG	5 cut(s)	51, 297, 323, 798, 1204
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	4 cut(s)	599, 671, 737, 898
BmuI	ACTGGG	1 cut(s)	439
BpiI	GAAGAC	2 cut(s)	282, 867
BplI	GAGNNNNNCTC	2 cut(s)	1124, 1156
BpmI	CTGGAG	1 cut(s)	570
BpuEI	CTTGAG	1 cut(s)	908
BpuMI	CCSGG	3 cut(s)	51, 297, 798
BsaAI	YACGTR	1 cut(s)	169
BsaBI	GATNNNNATC	1 cut(s)	687
BsaJI	CCNNGG	3 cut(s)	322, 442, 796
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 328
Bse1I	ACTGG	4 cut(s)	65, 161, 434, 553
Bse8I	GATNNNNATC	1 cut(s)	687
BseBI	CCWGG	2 cut(s)	323, 1204
BseDI	CCNNGG	3 cut(s)	322, 442, 796
BseGI	GGATG	1 cut(s)	182
BseJI	GATNNNNATC	1 cut(s)	687
BseLI	CCNNNNNNNGG	2 cut(s)	49, 328
BseMII	CTCAG	4 cut(s)	336, 936, 1152, 1199
BseNI	ACTGG	4 cut(s)	65, 161, 434, 553
BseRI	GAGGAG	2 cut(s)	1129, 1178
BseXI	GCAGC	3 cut(s)	748, 1064, 1087
BsgI	GTGCAG	1 cut(s)	1071
BshFI	GGCC	4 cut(s)	173, 234, 280, 1022
BsiHKAI	GWGCWC	1 cut(s)	1139
BsiSI	CCGG	3 cut(s)	50, 297, 798
BslFI	GGGAC	2 cut(s)	110, 1007
BslI	CCNNNNNNNGG	2 cut(s)	49, 328
BsmAI	GTCTC	1 cut(s)	186
BsmFI	GGGAC	2 cut(s)	110, 1007
BsnI	GGCC	4 cut(s)	173, 234, 280, 1022
Bsp1286I	GDGCHC	2 cut(s)	1139, 1255
Bsp143I	GATC	2 cut(s)	792, 895
BspACI	CCGC	1 cut(s)	270
BspANI	GGCC	4 cut(s)	173, 234, 280, 1022
BspCNI	CTCAG	4 cut(s)	337, 937, 1153, 1200
BspLI	GGNNCC	2 cut(s)	301, 995
BspPI	GGATC	1 cut(s)	787
BsrI	ACTGG	4 cut(s)	65, 161, 434, 553
BssECI	CCNNGG	3 cut(s)	322, 442, 796
BssMI	GATC	2 cut(s)	792, 895
BssT1I	CCWWGG	1 cut(s)	442
Bst2UI	CCWGG	2 cut(s)	323, 1204
Bst4CI	ACNGT	8 cut(s)	288, 420, 523, 542, 817, 1012, 1147, 1260
BstBAI	YACGTR	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	1233
BstDEI	CTNAG	5 cut(s)	345, 377, 945, 1161, 1208
BstF5I	GGATG	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	2 cut(s)	795, 898
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	2 cut(s)	792, 895
BstNI	CCWGG	2 cut(s)	323, 1204
BstSCI	CCNGG	5 cut(s)	49, 295, 321, 796, 1202
BstSFI	CTRYAG	2 cut(s)	486, 678
BstV1I	GCAGC	3 cut(s)	748, 1064, 1087
BstV2I	GAAGAC	2 cut(s)	282, 867
BstX2I	RGATCY	1 cut(s)	792
BstYI	RGATCY	1 cut(s)	792
BsuRI	GGCC	4 cut(s)	173, 234, 280, 1022
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	182
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	1233
CaiI	CAGNNNCTG	1 cut(s)	1081
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	994
Csp6I	GTAC	3 cut(s)	166, 524, 1114
CviAII	CATG	2 cut(s)	140, 359
CviQI	GTAC	3 cut(s)	166, 524, 1114
DdeI	CTNAG	5 cut(s)	345, 377, 945, 1161, 1208
DpnI	GATC	2 cut(s)	794, 897
DpnII	GATC	2 cut(s)	792, 895
DriI	GACNNNNNGTC	1 cut(s)	540
EaeI	YGGCCR	2 cut(s)	171, 1020
Eam1105I	GACNNNNNGTC	1 cut(s)	540
Ecl136II	GAGCTC	1 cut(s)	1137
Eco130I	CCWWGG	1 cut(s)	442
Eco147I	AGGCCT	1 cut(s)	280
Eco24I	GRGCYC	2 cut(s)	1139, 1255
Eco32I	GATATC	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	994
Eco53kI	GAGCTC	1 cut(s)	1137
Eco57I	CTGAAG	2 cut(s)	600, 1107
EcoICRI	GAGCTC	1 cut(s)	1137
EcoRII	CCWGG	2 cut(s)	321, 1202
EcoRV	GATATC	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	442
EcoT38I	GRGCYC	2 cut(s)	1139, 1255
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	2 cut(s)	143, 362
FalI	AAGNNNNNCTT	4 cut(s)	598, 630, 693, 725
FaqI	GGGAC	2 cut(s)	110, 1007
FatI	CATG	2 cut(s)	139, 358
FbaI	TGATCA	1 cut(s)	895
FblI	GTMKAC	1 cut(s)	1014
Fnu4HI	GCNGC	3 cut(s)	737, 1053, 1076
FokI	GGATG	1 cut(s)	169
FriOI	GRGCYC	2 cut(s)	1139, 1255
Fsp4HI	GCNGC	3 cut(s)	737, 1053, 1076
FspAI	RTGCGCAY	1 cut(s)	138
FspBI	CTAG	3 cut(s)	435, 698, 1038
FspI	TGCGCA	1 cut(s)	138
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	3 cut(s)	737, 1053, 1076
GsuI	CTGGAG	1 cut(s)	570
HaeIII	GGCC	4 cut(s)	173, 234, 280, 1022
HapII	CCGG	3 cut(s)	50, 297, 798
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	2 cut(s)	143, 362
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HinfI	GANTC	5 cut(s)	123, 968, 1097, 1166, 1186
HpaII	CCGG	3 cut(s)	50, 297, 798
HphI	GGTGA	3 cut(s)	397, 901, 997
Hpy166II	GTNNAC	3 cut(s)	427, 820, 1015
Hpy188I	TCNGA	7 cut(s)	346, 463, 546, 619, 792, 1162, 1191
Hpy188III	TCNNGA	8 cut(s)	115, 215, 517, 627, 710, 830, 877, 925
Hpy8I	GTNNAC	3 cut(s)	427, 820, 1015
HpyAV	CCTTC	5 cut(s)	487, 707, 948, 1082, 1242
HpyCH4III	ACNGT	8 cut(s)	288, 420, 523, 542, 817, 1012, 1147, 1260
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	5 cut(s)	106, 612, 782, 911, 1052
HpyF3I	CTNAG	5 cut(s)	345, 377, 945, 1161, 1208
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	143, 362
HspAI	GCGC	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	895
Kzo9I	GATC	2 cut(s)	792, 895
LmnI	GCTCC	4 cut(s)	305, 589, 725, 1142
Lsp1109I	GCAGC	3 cut(s)	748, 1064, 1087
LweI	GCATC	4 cut(s)	599, 671, 737, 898
MaeI	CTAG	3 cut(s)	435, 698, 1038
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	3 cut(s)	272, 974, 1167
MalI	GATC	2 cut(s)	794, 897
MboI	GATC	2 cut(s)	792, 895
MboII	GAAGA	6 cut(s)	23, 89, 282, 364, 872, 1204
MfeI	CAATTG	1 cut(s)	883
MflI	RGATCY	1 cut(s)	792
MhlI	GDGCHC	2 cut(s)	1139, 1255
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	6 cut(s)	54, 198, 481, 751, 883, 999
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	3 cut(s)	132, 977, 1175
Mox20I	TGGCCA	1 cut(s)	173
MroXI	GAANNNNTTC	1 cut(s)	1096
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	2 cut(s)	366, 1182
Msp20I	TGGCCA	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	1055
MspI	CCGG	3 cut(s)	50, 297, 798
MspR9I	CCNGG	5 cut(s)	51, 297, 323, 798, 1204
MunI	CAATTG	1 cut(s)	883
MvaI	CCWGG	2 cut(s)	323, 1204
NciI	CCSGG	3 cut(s)	51, 297, 798
NdeII	GATC	2 cut(s)	792, 895
NlaIII	CATG	2 cut(s)	143, 362
NlaIV	GGNNCC	2 cut(s)	301, 995
NmeAIII	GCCGAG	1 cut(s)	998
NmuCI	GTSAC	1 cut(s)	1167
NsbI	TGCGCA	1 cut(s)	138
PceI	AGGCCT	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	1 cut(s)	1116
PdmI	GAANNNNTTC	1 cut(s)	1096
PfeI	GAWTC	2 cut(s)	1097, 1186
PflFI	GACNNNGTC	1 cut(s)	866
PflMI	CCANNNNNTGG	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	49
PkrI	GCNGC	3 cut(s)	738, 1054, 1077
PleI	GAGTC	3 cut(s)	131, 976, 1174
PpsI	GAGTC	3 cut(s)	131, 976, 1174
Ppu21I	YACGTR	1 cut(s)	169
Psp124BI	GAGCTC	1 cut(s)	1139
Psp6I	CCWGG	2 cut(s)	321, 1202
PspGI	CCWGG	2 cut(s)	321, 1202
PspN4I	GGNNCC	2 cut(s)	301, 995
PspPI	GGNCC	1 cut(s)	994
PstNI	CAGNNNCTG	1 cut(s)	1081
PsuI	RGATCY	1 cut(s)	792
PsyI	GACNNNGTC	1 cut(s)	866
PvuII	CAGCTG	1 cut(s)	1055
RsaI	GTAC	3 cut(s)	167, 525, 1115
RsaNI	GTAC	3 cut(s)	166, 524, 1114
SacI	GAGCTC	1 cut(s)	1139
SaqAI	TTAA	2 cut(s)	366, 1182
SatI	GCNGC	3 cut(s)	737, 1053, 1076
Sau3AI	GATC	2 cut(s)	792, 895
Sau96I	GGNCC	1 cut(s)	994
SchI	GAGTC	3 cut(s)	132, 977, 1175
ScrFI	CCNGG	5 cut(s)	51, 297, 323, 798, 1204
SduI	GDGCHC	2 cut(s)	1139, 1255
SfaNI	GCATC	4 cut(s)	599, 671, 737, 898
SfcI	CTRYAG	2 cut(s)	486, 678
SinI	GGWCC	1 cut(s)	994
SmlI	CTYRAG	1 cut(s)	923
SmoI	CTYRAG	1 cut(s)	923
Sse9I	AATT	6 cut(s)	54, 198, 481, 751, 883, 999
SseBI	AGGCCT	1 cut(s)	280
SsiI	CCGC	1 cut(s)	270
SspMI	CTAG	3 cut(s)	435, 698, 1038
SstI	GAGCTC	1 cut(s)	1139
StuI	AGGCCT	1 cut(s)	280
StyD4I	CCNGG	5 cut(s)	49, 295, 321, 796, 1202
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	8 cut(s)	288, 420, 523, 542, 817, 1012, 1147, 1260
TaiI	ACGT	1 cut(s)	171
TaqII	GACCGA	1 cut(s)	1011
TasI	AATT	6 cut(s)	54, 198, 481, 751, 883, 999
TatI	WGTACW	1 cut(s)	523
TfiI	GAWTC	2 cut(s)	1097, 1186
Tru1I	TTAA	2 cut(s)	366, 1182
Tru9I	TTAA	2 cut(s)	366, 1182
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	1167
TseI	GCWGC	3 cut(s)	736, 1052, 1075
Tsp45I	GTSAC	1 cut(s)	1167
TspDTI	ATGAA	4 cut(s)	17, 582, 611, 873
TspRI	CASTG	1 cut(s)	181
Tth111I	GACNNNGTC	1 cut(s)	866
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	994
XapI	RAATTY	3 cut(s)	54, 198, 999
XcmI	CCANNNNNNNNNTGG	1 cut(s)	842
XmiI	GTMKAC	1 cut(s)	1014
XmnI	GAANNNNTTC	1 cut(s)	1096
XspI	CTAG	3 cut(s)	435, 698, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.