MD08G1071600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0015363
Physical Location & Seq
Reverse (-)
5674492 .. 5674845
354 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1071600.v1.1.491

Sequence Viewer

Length: 354 bp
ATGGAGCTCGGAGCTACGAGGAGGACGAGCAGGTTTTCGTCATACGATAAGCTGGTGGCGATAGGGTTGGCCCTTCTAGCCGTGCTTTCTCCTCTCTATATCGACCGAAGAACTATAGATGATTCAGAGCTTGATCCAGATGAGCCTATCAACTTTGCTTCTTGGCTGCCTCTTCTTCTCTTGGTGTTGATCTTGGCCATTGCTTTGTCGCTTTACTTAGACCGAAGCTTTTCCAGGTTTGATCCTTATTGGATTCACAGAGTTGGCGGTTCTTCGTGTGGTATAACGATAATTCTCATGGTTCTGGCTTTGATTTTGAAGTGTAAATCTTCCATTAGGAACTGGGAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.2

Weight (kDa)

6.55

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21910
fragaria_vesca FvH4_2g30960
malus_domestica MD08G1071600.v1.1 MD15G1049600.v1.1
prunus_persica Prupe.1G403900_v2.0.a1
pyrus_communis pycom08g05950
rosa_chinensis RchiOBHm_Chr6g0311901
rosa_laevigata RLG00000010370
rosa_multiflora Rmu_sc0002888.1_g000054
rosa_roxburghii Rroxscaffold_7G00157240
rosa_rugosa Rorug06G0391300
rosa_samantha Rh6AG507600 Rh6BG518800 Rh6CG524500 Rh6DG510100
rosa_wichuraiana Rw6G044180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 21
AciI CCGC 1 cut(s) 267
AclWI GGATC 2 cut(s) 128, 236
AcoI YGGCCR 1 cut(s) 195
AgsI TTSAA 1 cut(s) 319
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 5 cut(s) 7, 14, 52, 130, 228
AluI AGCT 5 cut(s) 7, 14, 52, 130, 228
Alw21I GWGCWC 1 cut(s) 9
AlwI GGATC 2 cut(s) 128, 236
AoxI GGCC 2 cut(s) 69, 195
ApeKI GCWGC 1 cut(s) 166
Asp700I GAANNNNTTC 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 70
BalI TGGCCA 1 cut(s) 197
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 153
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 235
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 21
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
Bme1390I CCNGG 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 235
BmrI ACTGGG 1 cut(s) 352
BmuI ACTGGG 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 347
BseRI GAGGAG 2 cut(s) 34, 81
BseXI GCAGC 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 2 cut(s) 71, 197
BsiEI CGRYCG 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 9
BsnI GGCC 2 cut(s) 71, 197
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 3 cut(s) 133, 189, 241
BspACI CCGC 1 cut(s) 267
BspANI GGCC 2 cut(s) 71, 197
BspLI GGNNCC 1 cut(s) 348
BspMI ACCTGC 1 cut(s) 21
BspPI GGATC 2 cut(s) 128, 236
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 1 cut(s) 347
BssMI GATC 3 cut(s) 133, 189, 241
Bst2UI CCWGG 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 217
BstKTI GATC 3 cut(s) 136, 192, 244
BstMBI GATC 3 cut(s) 133, 189, 241
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 233
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 153
BsuRI GGCC 2 cut(s) 71, 197
BveI ACCTGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 70
CviAII CATG 1 cut(s) 298
DdeI CTNAG 1 cut(s) 217
DpnI GATC 3 cut(s) 135, 191, 243
DpnII GATC 3 cut(s) 133, 189, 241
EaeI YGGCCR 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Ecl136II GAGCTC 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 9
Eco53kI GAGCTC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 233
EcoT38I GRGCYC 1 cut(s) 9
FaeI CATG 1 cut(s) 301
FaiI YATR 5 cut(s) 43, 99, 116, 284, 299
FatI CATG 1 cut(s) 297
Fnu4HI GCNGC 1 cut(s) 167
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 167
FspBI CTAG 1 cut(s) 77
GluI GCNGC 1 cut(s) 167
HaeIII GGCC 2 cut(s) 71, 197
Hin1II CATG 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 2 cut(s) 122, 253
Hpy188I TCNGA 2 cut(s) 11, 127
Hpy188III TCNNGA 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 217
Hsp92II CATG 1 cut(s) 301
Kzo9I GATC 3 cut(s) 133, 189, 241
LmnI GCTCC 3 cut(s) 4, 11, 346
LpnPI CCDG 7 cut(s) 16, 38, 150, 220, 247, 290, 328
Lsp1109I GCAGC 1 cut(s) 153
MaeI CTAG 1 cut(s) 77
MalI GATC 3 cut(s) 135, 191, 243
MboI GATC 3 cut(s) 133, 189, 241
MboII GAAGA 5 cut(s) 120, 164, 167, 264, 321
MhlI GDGCHC 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 1 cut(s) 291
MluNI TGGCCA 1 cut(s) 197
MnlI CCTC 4 cut(s) 12, 15, 102, 180
Mox20I TGGCCA 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 229
MscI TGGCCA 1 cut(s) 197
MseI TTAA 1 cut(s) 352
Msp20I TGGCCA 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 3 cut(s) 133, 189, 241
NlaIII CATG 1 cut(s) 301
NlaIV GGNNCC 1 cut(s) 348
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 229
PfeI GAWTC 2 cut(s) 122, 253
PkrI GCNGC 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 1 cut(s) 70
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 1 cut(s) 352
SatI GCNGC 1 cut(s) 167
Sau3AI GATC 3 cut(s) 133, 189, 241
Sau96I GGNCC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 235
SduI GDGCHC 1 cut(s) 9
SetI ASST 7 cut(s) 9, 16, 35, 54, 132, 230, 239
SfcI CTRYAG 1 cut(s) 114
Sse9I AATT 1 cut(s) 291
SsiI CCGC 1 cut(s) 267
SspMI CTAG 1 cut(s) 77
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 233
TaqI TCGA 1 cut(s) 102
TaqII GACCGA 2 cut(s) 120, 237
TasI AATT 1 cut(s) 291
TfiI GAWTC 2 cut(s) 122, 253
Tru1I TTAA 1 cut(s) 352
Tru9I TTAA 1 cut(s) 352
TseI GCWGC 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 229
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.