Rh6DG510100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0015363
Physical Location & Seq
Reverse (-)
66377767 .. 66378120
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG510100.1

Sequence Viewer

Length: 354 bp
ATGGAGCCTGGAGCTACAAGGAGGACGAGCCGATTTTCTTCATATGAGAGGTTGGTCGCCATCGGGTTGGCACTTCTAGCTGTGCTTTCTCCTCTCTATATTGACCGCACAACAGTAGATGATTCAGAACTGGACTTGCAGGAGCCCATCAATTTTGCTGCTTGGCTGCCCCTGCTGCTCGTGGTGTTGATCTTGGCCATCACTTTGTCGCTTTACTTGGACCGAAGCTTTACCAGGTTCGATCCTTACTGGATTTACAGAGTTGGCGGTTCTTCGAGTGGTATTATAATAACTCTCCTGGTTCTGGCGTTAGTTTTGAAGTGTAAAGCTTCTGTTTGGAACCGGGAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.12

Weight (kDa)

6.19

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21910
fragaria_vesca FvH4_2g30960
malus_domestica MD08G1071600.v1.1 MD15G1049600.v1.1
prunus_persica Prupe.1G403900_v2.0.a1
pyrus_communis pycom08g05950
rosa_chinensis RchiOBHm_Chr6g0311901
rosa_laevigata RLG00000010370
rosa_multiflora Rmu_sc0002888.1_g000054
rosa_roxburghii Rroxscaffold_7G00157240
rosa_rugosa Rorug06G0391300
rosa_samantha Rh6AG507600 Rh6BG518800 Rh6CG524500 Rh6DG510100
rosa_wichuraiana Rw6G044180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
AciI CCGC 2 cut(s) 106, 267
AclWI GGATC 1 cut(s) 236
AcoI YGGCCR 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 1 cut(s) 319
AjnI CCWGG 3 cut(s) 7, 233, 297
AluBI AGCT 4 cut(s) 14, 80, 228, 329
AluI AGCT 4 cut(s) 14, 80, 228, 329
AlwI GGATC 1 cut(s) 236
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 3 cut(s) 158, 166, 175
AspS9I GGNCC 1 cut(s) 220
AsuC2I CCSGG 1 cut(s) 344
AvaII GGWCC 1 cut(s) 220
BalI TGGCCA 1 cut(s) 197
BanII GRGCYC 1 cut(s) 147
BauI CACGAG 1 cut(s) 179
BbvI GCAGC 3 cut(s) 145, 153, 162
BccI CCATC 3 cut(s) 68, 155, 206
BciT130I CCWGG 3 cut(s) 9, 235, 299
BcnI CCSGG 1 cut(s) 344
BfaI CTAG 1 cut(s) 77
BisI GCNGC 3 cut(s) 159, 167, 176
BlsI GCNGC 3 cut(s) 160, 168, 177
Bme1390I CCNGG 4 cut(s) 9, 235, 299, 344
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 3 cut(s) 6, 144, 341
BmrFI CCNGG 4 cut(s) 9, 235, 299, 344
BpmI CTGGAG 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse1I ACTGG 2 cut(s) 135, 254
BseBI CCWGG 3 cut(s) 9, 235, 299
BseLI CCNNNNNNNGG 1 cut(s) 304
BseNI ACTGG 2 cut(s) 135, 254
BseRI GAGGAG 1 cut(s) 81
BseXI GCAGC 3 cut(s) 145, 153, 162
BshFI GGCC 1 cut(s) 197
BsiSI CCGG 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 304
BsnI GGCC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 189, 241
BspACI CCGC 2 cut(s) 106, 267
BspANI GGCC 1 cut(s) 197
BspLI GGNNCC 3 cut(s) 6, 144, 341
BspPI GGATC 1 cut(s) 236
BsrI ACTGG 2 cut(s) 135, 254
BssMI GATC 2 cut(s) 189, 241
BssSI CACGAG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 3 cut(s) 9, 235, 299
Bst4CI ACNGT 1 cut(s) 115
BstKTI GATC 2 cut(s) 192, 244
BstMBI GATC 2 cut(s) 189, 241
BstMWI GCNNNNNNNGC 3 cut(s) 77, 172, 175
BstNI CCWGG 3 cut(s) 9, 235, 299
BstSCI CCNGG 4 cut(s) 7, 233, 297, 342
BstV1I GCAGC 3 cut(s) 145, 153, 162
BstXI CCANNNNNNTGG 1 cut(s) 67
BsuRI GGCC 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 220
CsiI ACCWGGT 1 cut(s) 233
DpnI GATC 2 cut(s) 191, 243
DpnII GATC 2 cut(s) 189, 241
EaeI YGGCCR 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 220
EcoRII CCWGG 3 cut(s) 7, 233, 297
EcoT38I GRGCYC 1 cut(s) 147
FaiI YATR 4 cut(s) 43, 45, 99, 287
FauNDI CATATG 1 cut(s) 43
Fnu4HI GCNGC 3 cut(s) 159, 167, 176
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 3 cut(s) 159, 167, 176
FspBI CTAG 1 cut(s) 77
GluI GCNGC 3 cut(s) 159, 167, 176
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 197
HapII CCGG 1 cut(s) 343
HindIII AAGCTT 2 cut(s) 226, 327
HinfI GANTC 1 cut(s) 122
HpaII CCGG 1 cut(s) 343
Hpy188I TCNGA 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 172, 175
Kzo9I GATC 2 cut(s) 189, 241
LmnI GCTCC 3 cut(s) 4, 11, 142
Lsp1109I GCAGC 3 cut(s) 145, 153, 162
MabI ACCWGGT 1 cut(s) 233
MaeI CTAG 1 cut(s) 77
MalI GATC 2 cut(s) 191, 243
MboI GATC 2 cut(s) 189, 241
MboII GAAGA 2 cut(s) 30, 264
MhlI GDGCHC 1 cut(s) 147
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 1 cut(s) 151
MluNI TGGCCA 1 cut(s) 197
MnlI CCTC 4 cut(s) 15, 42, 102, 340
Mox20I TGGCCA 1 cut(s) 197
MscI TGGCCA 1 cut(s) 197
MseI TTAA 1 cut(s) 352
Msp20I TGGCCA 1 cut(s) 197
MspI CCGG 1 cut(s) 343
MspR9I CCNGG 4 cut(s) 9, 235, 299, 344
MvaI CCWGG 3 cut(s) 9, 235, 299
MwoI GCNNNNNNNGC 3 cut(s) 77, 172, 175
NciI CCSGG 1 cut(s) 344
NdeI CATATG 1 cut(s) 43
NdeII GATC 2 cut(s) 189, 241
NlaIV GGNNCC 3 cut(s) 6, 144, 341
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 3 cut(s) 160, 168, 177
PsiI TTATAA 1 cut(s) 287
Psp6I CCWGG 3 cut(s) 7, 233, 297
PspGI CCWGG 3 cut(s) 7, 233, 297
PspN4I GGNNCC 3 cut(s) 6, 144, 341
PspPI GGNCC 1 cut(s) 220
SaqAI TTAA 1 cut(s) 352
SatI GCNGC 3 cut(s) 159, 167, 176
Sau3AI GATC 2 cut(s) 189, 241
Sau96I GGNCC 1 cut(s) 220
ScrFI CCNGG 4 cut(s) 9, 235, 299, 344
SduI GDGCHC 1 cut(s) 147
SetI ASST 6 cut(s) 16, 53, 82, 230, 239, 331
SexAI ACCWGGT 1 cut(s) 233
SinI GGWCC 1 cut(s) 220
Sse9I AATT 1 cut(s) 151
SsiI CCGC 2 cut(s) 106, 267
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 4 cut(s) 7, 233, 297, 342
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 2 cut(s) 240, 275
TaqII GACCGA 1 cut(s) 237
TasI AATT 1 cut(s) 151
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 352
Tru9I TTAA 1 cut(s) 352
TseI GCWGC 3 cut(s) 158, 166, 175
TspDTI ATGAA 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 220
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.