Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015363

Physical Location & Seq

Genomic Coordinates Forward (+)

35568778 .. 35569576

Gene Structure 799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G403900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAGCCTGGAGCTGCATCGAGGAGGACGAGCAGGTTTTCTTCATATGAGAGGCTGGTGGCCATCGGGTTGGCCCTTCTAGCTGTGCTTTCTCCTCTCTATATCGACCGGACAACGGTAGATGATTCAGAACTTGATTTGGAGCAGCCTATTAACTTTGCTTCTTGGCTGCCTCTGCTGCTCTTGGTGTTGATCTTGGCCCTCACTTTGTCGCTTTACTTGGACCGAAGCTTTACCAGGTTTGATCCTTACTGGATTCACAGAGTTGGCGGTTCTTCTAGTGGCATCACGATAATCCTCATGGTTCTTGCGTTGGTGTTGAAGTTTAAAGCTTCTATTAGGAACTGGGAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.25

Weight (kDa)

6.56

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21910
fragaria_vesca	FvH4_2g30960
malus_domestica	MD08G1071600.v1.1 MD15G1049600.v1.1
prunus_persica	Prupe.1G403900_v2.0.a1
pyrus_communis	pycom08g05950
rosa_chinensis	RchiOBHm_Chr6g0311901
rosa_laevigata	RLG00000010370
rosa_multiflora	Rmu_sc0002888.1_g000054
rosa_roxburghii	Rroxscaffold_7G00157240
rosa_rugosa	Rorug06G0391300
rosa_samantha	Rh6AG507600 Rh6BG518800 Rh6CG524500 Rh6DG510100
rosa_wichuraiana	Rw6G044180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	24
AciI	CCGC	1 cut(s)	270
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	322
AjnI	CCWGG	2 cut(s)	7, 236
AluBI	AGCT	4 cut(s)	14, 83, 231, 332
AluI	AGCT	4 cut(s)	14, 83, 231, 332
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	3 cut(s)	60, 72, 198
ApeKI	GCWGC	4 cut(s)	14, 145, 169, 178
AspS9I	GGNCC	3 cut(s)	73, 199, 223
AvaII	GGWCC	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	62
BbvI	GCAGC	3 cut(s)	156, 157, 165
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	9, 238
BfaI	CTAG	2 cut(s)	80, 279
BfuAI	ACCTGC	1 cut(s)	24
BisI	GCNGC	4 cut(s)	15, 146, 170, 179
BlsI	GCNGC	4 cut(s)	16, 147, 171, 180
Bme1390I	CCNGG	2 cut(s)	9, 238
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	3 cut(s)	73, 199, 223
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	9, 238
BmrI	ACTGGG	1 cut(s)	355
BmsI	GCATC	2 cut(s)	26, 294
BmuI	ACTGGG	1 cut(s)	355
BpmI	CTGGAG	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	257, 350
BseBI	CCWGG	2 cut(s)	9, 238
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseNI	ACTGG	2 cut(s)	257, 350
BseRI	GAGGAG	2 cut(s)	37, 84
BseXI	GCAGC	3 cut(s)	156, 157, 165
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	3 cut(s)	62, 74, 200
BsiEI	CGRYCG	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	115
BsnI	GGCC	3 cut(s)	62, 74, 200
Bsp143I	GATC	2 cut(s)	192, 244
BspACI	CCGC	1 cut(s)	270
BspANI	GGCC	3 cut(s)	62, 74, 200
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	24
BspPI	GGATC	1 cut(s)	239
BsrI	ACTGG	2 cut(s)	257, 350
BssMI	GATC	2 cut(s)	192, 244
Bst2UI	CCWGG	2 cut(s)	9, 238
Bst4CI	ACNGT	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	354
BstKTI	GATC	2 cut(s)	195, 247
BstMBI	GATC	2 cut(s)	192, 244
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 175, 178
BstNI	CCWGG	2 cut(s)	9, 238
BstSCI	CCNGG	2 cut(s)	7, 236
BstV1I	GCAGC	3 cut(s)	156, 157, 165
BstXI	CCANNNNNNTGG	1 cut(s)	70
BsuRI	GGCC	3 cut(s)	62, 74, 200
BveI	ACCTGC	1 cut(s)	24
Cfr13I	GGNCC	3 cut(s)	73, 199, 223
CsiI	ACCWGGT	1 cut(s)	236
CviAII	CATG	1 cut(s)	301
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	2 cut(s)	194, 246
DpnII	GATC	2 cut(s)	192, 244
DraI	TTTAAA	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	7, 236
FaeI	CATG	1 cut(s)	304
FaiI	YATR	4 cut(s)	46, 48, 102, 302
FatI	CATG	1 cut(s)	300
FauNDI	CATATG	1 cut(s)	46
Fnu4HI	GCNGC	4 cut(s)	15, 146, 170, 179
Fsp4HI	GCNGC	4 cut(s)	15, 146, 170, 179
FspBI	CTAG	2 cut(s)	80, 279
GluI	GCNGC	4 cut(s)	15, 146, 170, 179
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	3 cut(s)	62, 74, 200
HapII	CCGG	1 cut(s)	109
Hin1II	CATG	1 cut(s)	304
HindIII	AAGCTT	2 cut(s)	229, 330
HinfI	GANTC	2 cut(s)	125, 256
HpaII	CCGG	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	289
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 175, 178
HpyF3I	CTNAG	1 cut(s)	354
Hsp92II	CATG	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	192, 244
LmnI	GCTCC	3 cut(s)	4, 11, 142
LpnPI	CCDG	8 cut(s)	19, 21, 41, 122, 223, 238, 250, 331
Lsp1109I	GCAGC	3 cut(s)	156, 157, 165
LweI	GCATC	2 cut(s)	26, 294
MabI	ACCWGGT	1 cut(s)	236
MaeI	CTAG	2 cut(s)	80, 279
MalI	GATC	2 cut(s)	194, 246
MboI	GATC	2 cut(s)	192, 244
MboII	GAAGA	2 cut(s)	33, 267
MlsI	TGGCCA	1 cut(s)	62
MluNI	TGGCCA	1 cut(s)	62
MnlI	CCTC	8 cut(s)	15, 18, 45, 105, 183, 212, 308, 343
Mox20I	TGGCCA	1 cut(s)	62
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	2 cut(s)	153, 327
Msp20I	TGGCCA	1 cut(s)	62
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	2 cut(s)	9, 238
MvaI	CCWGG	2 cut(s)	9, 238
MwoI	GCNNNNNNNGC	3 cut(s)	80, 175, 178
NdeI	CATATG	1 cut(s)	46
NdeII	GATC	2 cut(s)	192, 244
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	125, 256
PkrI	GCNGC	4 cut(s)	16, 147, 171, 180
Psp6I	CCWGG	2 cut(s)	7, 236
PspGI	CCWGG	2 cut(s)	7, 236
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	3 cut(s)	73, 199, 223
SaqAI	TTAA	2 cut(s)	153, 327
SatI	GCNGC	4 cut(s)	15, 146, 170, 179
Sau3AI	GATC	2 cut(s)	192, 244
Sau96I	GGNCC	3 cut(s)	73, 199, 223
ScrFI	CCNGG	2 cut(s)	9, 238
SetI	ASST	6 cut(s)	16, 38, 85, 233, 242, 334
SexAI	ACCWGGT	1 cut(s)	236
SfaNI	GCATC	2 cut(s)	26, 294
SinI	GGWCC	1 cut(s)	223
SsiI	CCGC	1 cut(s)	270
SspMI	CTAG	2 cut(s)	80, 279
StyD4I	CCNGG	2 cut(s)	7, 236
TaaI	ACNGT	1 cut(s)	118
TaqI	TCGA	2 cut(s)	20, 105
TaqII	GACCGA	1 cut(s)	240
TfiI	GAWTC	2 cut(s)	125, 256
Tru1I	TTAA	2 cut(s)	153, 327
Tru9I	TTAA	2 cut(s)	153, 327
TseI	GCWGC	4 cut(s)	14, 145, 169, 178
TspDTI	ATGAA	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	223
XspI	CTAG	2 cut(s)	80, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.