MD08G1115700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0021143
Physical Location & Seq
Reverse (-)
10489605 .. 10489961
357 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1115700.v1.1.491

Sequence Viewer

Length: 357 bp
ATGGAGCCGAATCTCAACCTCATCCTACTTGCATTTCTCCACGGCGCATTCATCGTCTGCATTCTTCTTCTCGTTATCTCTGCCGCCTTGACTTGTCTCTTGTTTATATTCGCCCTCGGCCTCTTTTCGATCCTCTTAGATGATTTGTACCACATCTATTTGCTTTCCTGCTTCTACTTTGAAACAGTTGTGATGCCTAATCTTGAACATGGTTTTGTTGTAATTGTCTACAAGCTGTTGTGTCATGCTGTTGCCATTTTCTTGGCTTCAAATTCTTTCTCTGAATGTAAGGTTTCTCGAATCAAAGTAAAGGCAAGACGTGTGATGCATTTTATTGATGGCTTGCGGCCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.34

Weight (kDa)

7.69

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021143)

Species Orthologous Gene IDs
malus_domestica MD08G1115700.v1.1 MD15G1095500.v1.1
prunus_persica Prupe.1G450400_v2.0.a1
rosa_samantha Rh6AG457800 Rh6BG443000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 228
AciI CCGC 2 cut(s) 84, 346
AclWI GGATC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 271
AfaI GTAC 1 cut(s) 149
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 3 cut(s) 182, 206, 270
AjiI CACGTC 1 cut(s) 320
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 124
AoxI GGCC 2 cut(s) 118, 347
ApoI RAATTY 1 cut(s) 271
AspLEI GCGC 1 cut(s) 47
BccI CCATC 1 cut(s) 332
BceAI ACGGC 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 101
BisI GCNGC 2 cut(s) 84, 347
BlsI GCNGC 2 cut(s) 85, 348
BmgBI CACGTC 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 183, 315
BsaJI CCNNGG 2 cut(s) 40, 115
BseDI CCNNGG 2 cut(s) 40, 115
BseGI GGATG 1 cut(s) 21
BshFI GGCC 2 cut(s) 120, 349
BsmAI GTCTC 1 cut(s) 101
BsmI GAATGC 2 cut(s) 47, 60
BsnI GGCC 2 cut(s) 120, 349
Bsp143I GATC 1 cut(s) 129
BspACI CCGC 2 cut(s) 84, 346
BspANI GGCC 2 cut(s) 120, 349
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 124
BssECI CCNNGG 2 cut(s) 40, 115
BssMI GATC 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 1 cut(s) 136
BstDSI CCRYGG 1 cut(s) 40
BstF5I GGATG 1 cut(s) 21
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 1 cut(s) 132
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 129
BstXI CCANNNNNNTGG 1 cut(s) 262
BsuRI GGCC 2 cut(s) 120, 349
BtgI CCRYGG 1 cut(s) 40
BtrI CACGTC 1 cut(s) 320
BtsCI GGATG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 344
CfoI GCGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 148
CviAII CATG 2 cut(s) 209, 245
CviJI RGCY 6 cut(s) 7, 120, 235, 266, 342, 349
CviKI_1 RGCY 6 cut(s) 7, 120, 235, 266, 342, 349
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 136
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
EcoT22I ATGCAT 1 cut(s) 330
FaeI CATG 2 cut(s) 212, 248
FaiI YATR 3 cut(s) 107, 210, 246
FatI CATG 2 cut(s) 208, 244
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 84, 347
FokI GGATG 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 84, 347
GlaI GCGC 1 cut(s) 46
GluI GCNGC 2 cut(s) 84, 347
HaeIII GGCC 2 cut(s) 120, 349
HhaI GCGC 1 cut(s) 47
Hin1II CATG 2 cut(s) 212, 248
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HinfI GANTC 2 cut(s) 10, 300
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 2 cut(s) 203, 297
Hpy8I GTNNAC 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 3 cut(s) 32, 60, 328
HpyF3I CTNAG 1 cut(s) 136
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 2 cut(s) 212, 248
HspAI GCGC 1 cut(s) 45
Kzo9I GATC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 1 cut(s) 181
LweI GCATC 2 cut(s) 183, 315
MaeII ACGT 1 cut(s) 319
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 2 cut(s) 56, 59
MluCI AATT 2 cut(s) 222, 271
MnlI CCTC 4 cut(s) 29, 125, 131, 143
Mph1103I ATGCAT 1 cut(s) 330
MseI TTAA 1 cut(s) 355
Mva1269I GAATGC 2 cut(s) 47, 60
NdeII GATC 1 cut(s) 129
NlaIII CATG 2 cut(s) 212, 248
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 96
NsiI ATGCAT 1 cut(s) 330
PctI GAATGC 2 cut(s) 47, 60
PfeI GAWTC 2 cut(s) 10, 300
PkrI GCNGC 2 cut(s) 85, 348
PspN4I GGNNCC 1 cut(s) 6
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 355
SatI GCNGC 2 cut(s) 84, 347
Sau3AI GATC 1 cut(s) 129
SetI ASST 4 cut(s) 21, 237, 294, 322
SfaNI GCATC 2 cut(s) 183, 315
Sse9I AATT 2 cut(s) 222, 271
SsiI CCGC 2 cut(s) 84, 346
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 322
TaqI TCGA 2 cut(s) 128, 298
TasI AATT 2 cut(s) 222, 271
TauI GCSGC 2 cut(s) 86, 349
TfiI GAWTC 2 cut(s) 10, 300
Tru1I TTAA 1 cut(s) 355
Tru9I TTAA 1 cut(s) 355
TspDTI ATGAA 1 cut(s) 40
XapI RAATTY 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 228
Zsp2I ATGCAT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.