Rh6BG443000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0021143
Physical Location & Seq
Reverse (-)
66021135 .. 66021488
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG443000.1

Sequence Viewer

Length: 354 bp
ATGGAACCCAATTTAGACCTGATCCTACTTGCATTCCTCCATGGCTCCTTCATCGCGTGCGTTCTTCTTCTTTTAATCTCTTTCATTTTAACTGGTCTCTTGCTTGCATTCTCCTTCGGACTCGTTTCAATTACCGTAAATGATTTGAACAATATTTCCTTGCTTTCTTCTTTCTACTTCAAATCAGTACTAGAGCCTAATCTTGAATTGGGTTTTACTATAATAGTATGTGCAATATTGCATTGCGCTGTTGGCATCATCTTGGCTTCAACCCCTTTCTTTGACCGCATGGTTTATGAGCTCAAAGTAAAGGTAAGACATGTGATGAATCTTATCGATGGCTTGAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.97

Weight (kDa)

5.8

Isoelectric Point (pI)

29.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021143)

Species Orthologous Gene IDs
malus_domestica MD08G1115700.v1.1 MD15G1095500.v1.1
prunus_persica Prupe.1G450400_v2.0.a1
rosa_samantha Rh6AG457800 Rh6BG443000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 56
AciI CCGC 1 cut(s) 286
AclWI GGATC 1 cut(s) 16
AfaI GTAC 1 cut(s) 189
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 5 cut(s) 129, 148, 181, 206, 270
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 2 cut(s) 101, 340
AlwI GGATC 1 cut(s) 16
AspLEI GCGC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 303
BccI CCATC 1 cut(s) 332
BcoDI GTCTC 2 cut(s) 101, 340
BfaI CTAG 1 cut(s) 191
BmcAI AGTACT 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 6, 46
BmsI GCATC 1 cut(s) 264
Bsa29I ATCGAT 1 cut(s) 336
BsaI GGTCTC 2 cut(s) 101, 340
BsaJI CCNNGG 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 241
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 241
BseNI ACTGG 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 56
BshVI ATCGAT 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 303
BsmAI GTCTC 2 cut(s) 101, 340
BsmI GAATGC 2 cut(s) 32, 107
Bso31I GGTCTC 2 cut(s) 101, 340
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 1 cut(s) 21
Bsp19I CCATGG 1 cut(s) 40
BspACI CCGC 1 cut(s) 286
BspDI ATCGAT 1 cut(s) 336
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 6, 46
BspPI GGATC 1 cut(s) 16
BspTNI GGTCTC 2 cut(s) 101, 340
BsrDI GCAATG 1 cut(s) 241
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 58, 105
BstDSI CCRYGG 1 cut(s) 40
BstFNI CGCG 1 cut(s) 56
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 2 cut(s) 101, 340
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 323
BstUI CGCG 1 cut(s) 56
Bsu15I ATCGAT 1 cut(s) 336
BsuTUI ATCGAT 1 cut(s) 336
BtgI CCRYGG 1 cut(s) 40
BtgZI GCGATG 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 58, 105
CfoI GCGC 1 cut(s) 248
ClaI ATCGAT 1 cut(s) 336
Csp6I GTAC 1 cut(s) 188
CviAII CATG 3 cut(s) 41, 289, 320
CviJI RGCY 5 cut(s) 45, 196, 266, 301, 342
CviKI_1 RGCY 5 cut(s) 45, 196, 266, 301, 342
CviQI GTAC 1 cut(s) 188
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 303
Eco31I GGTCTC 2 cut(s) 101, 340
Eco53kI GAGCTC 1 cut(s) 301
EcoICRI GAGCTC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 3 cut(s) 44, 292, 323
FaiI YATR 6 cut(s) 42, 221, 229, 290, 297, 321
FatI CATG 3 cut(s) 40, 288, 319
FriOI GRGCYC 1 cut(s) 303
FspBI CTAG 1 cut(s) 191
GlaI GCGC 1 cut(s) 247
HhaI GCGC 1 cut(s) 248
Hin1II CATG 3 cut(s) 44, 292, 323
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HinfI GANTC 2 cut(s) 120, 328
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 1 cut(s) 203
HpyAV CCTTC 2 cut(s) 58, 124
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 4 cut(s) 32, 107, 233, 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
Hsp92II CATG 3 cut(s) 44, 292, 323
HspAI GCGC 1 cut(s) 246
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 2 cut(s) 32, 78
LweI GCATC 1 cut(s) 264
MaeI CTAG 1 cut(s) 191
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 3 cut(s) 56, 59, 159
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 3 cut(s) 10, 129, 206
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 1 cut(s) 47
MseI TTAA 3 cut(s) 74, 89, 352
Mva1269I GAATGC 2 cut(s) 32, 107
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 252
NcoI CCATGG 1 cut(s) 40
NdeII GATC 1 cut(s) 21
NlaIII CATG 3 cut(s) 44, 292, 323
NlaIV GGNNCC 2 cut(s) 6, 46
NspI RCATGY 1 cut(s) 323
PciI ACATGT 1 cut(s) 319
PctI GAATGC 2 cut(s) 32, 107
PfeI GAWTC 1 cut(s) 328
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
PscI ACATGT 1 cut(s) 319
Psp124BI GAGCTC 1 cut(s) 303
PspN4I GGNNCC 2 cut(s) 6, 46
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SacI GAGCTC 1 cut(s) 303
SaqAI TTAA 3 cut(s) 74, 89, 352
Sau3AI GATC 1 cut(s) 21
ScaI AGTACT 1 cut(s) 189
SchI GAGTC 1 cut(s) 114
SduI GDGCHC 1 cut(s) 303
SetI ASST 4 cut(s) 21, 303, 315, 352
SfaNI GCATC 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 3 cut(s) 10, 129, 206
SsiI CCGC 1 cut(s) 286
SspI AATATT 2 cut(s) 154, 237
SspMI CTAG 1 cut(s) 191
SstI GAGCTC 1 cut(s) 303
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 336
TasI AATT 3 cut(s) 10, 129, 206
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 3 cut(s) 74, 89, 352
Tru9I TTAA 3 cut(s) 74, 89, 352
TspDTI ATGAA 3 cut(s) 40, 73, 341
XceI RCATGY 1 cut(s) 323
XspI CTAG 1 cut(s) 191
ZrmI AGTACT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.