Rh6AG457800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0021143
Physical Location & Seq
Forward (+)
64144282 .. 64144635
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG457800.1

Sequence Viewer

Length: 354 bp
ATGGAACCCAATTTAGACCTGATCCTACTTGCATTCCTCCATGGCTCCTTCATCTCGTGCGTTCTTCTTCTTTTAATCTCTTTCATTTTAACTGGTCTCTTGCTTGCATTCTCCTTCGGACTCGTTTCAATTACCGTAAATGATTTGAACAATATTTCCTTGCTTTCTTCTTTCTACTTCAGATCAGTACTAGAGCCTAATCTTGAATTGGGTTTTACTATAATAGTGTGTGCAATATTGCATTGCGCTGTTGGCATCATCTTGGCTTCAACCCCTTTCTTTGACCGCATTGTTTATGAGCTCAAAGTAAAGGTAAGGCATGTGATGAATCTTATGGATGGCTTGAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.01

Weight (kDa)

5.8

Isoelectric Point (pI)

32.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021143)

Species Orthologous Gene IDs
malus_domestica MD08G1115700.v1.1 MD15G1095500.v1.1
prunus_persica Prupe.1G450400_v2.0.a1
rosa_samantha Rh6AG457800 Rh6BG443000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 286
AclWI GGATC 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 163
AfaI GTAC 1 cut(s) 189
AgsI TTSAA 4 cut(s) 129, 148, 206, 270
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 2 cut(s) 101, 340
AlwI GGATC 1 cut(s) 16
AspLEI GCGC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 303
BauI CACGAG 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 303
BccI CCATC 1 cut(s) 332
BcoDI GTCTC 2 cut(s) 101, 340
BfaI CTAG 1 cut(s) 191
BmcAI AGTACT 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 6, 46
BmsI GCATC 1 cut(s) 264
BsaI GGTCTC 2 cut(s) 101, 340
BsaJI CCNNGG 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 1 cut(s) 343
BseMI GCAATG 1 cut(s) 241
BseNI ACTGG 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 303
BsmAI GTCTC 2 cut(s) 101, 340
BsmI GAATGC 2 cut(s) 32, 107
Bso31I GGTCTC 2 cut(s) 101, 340
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 2 cut(s) 21, 182
Bsp19I CCATGG 1 cut(s) 40
BspACI CCGC 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 6, 46
BspPI GGATC 1 cut(s) 16
BspTNI GGTCTC 2 cut(s) 101, 340
BsrDI GCAATG 1 cut(s) 241
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 2 cut(s) 21, 182
BssSI CACGAG 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 105
BstDSI CCRYGG 1 cut(s) 40
BstF5I GGATG 1 cut(s) 343
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 2 cut(s) 24, 185
BstMAI GTCTC 2 cut(s) 101, 340
BstMBI GATC 2 cut(s) 21, 182
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 323
BtgI CCRYGG 1 cut(s) 40
BtsCI GGATG 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 105
CfoI GCGC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 188
CviAII CATG 2 cut(s) 41, 320
CviJI RGCY 5 cut(s) 45, 196, 266, 301, 342
CviKI_1 RGCY 5 cut(s) 45, 196, 266, 301, 342
CviQI GTAC 1 cut(s) 188
DpnI GATC 2 cut(s) 23, 184
DpnII GATC 2 cut(s) 21, 182
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 303
Eco31I GGTCTC 2 cut(s) 101, 340
Eco53kI GAGCTC 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 2 cut(s) 44, 323
FaiI YATR 5 cut(s) 42, 221, 297, 321, 335
FatI CATG 2 cut(s) 40, 319
FokI GGATG 1 cut(s) 350
FriOI GRGCYC 1 cut(s) 303
FspBI CTAG 1 cut(s) 191
GlaI GCGC 1 cut(s) 247
HhaI GCGC 1 cut(s) 248
Hin1II CATG 2 cut(s) 44, 323
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HinfI GANTC 2 cut(s) 120, 328
Hpy188I TCNGA 2 cut(s) 119, 182
Hpy188III TCNNGA 1 cut(s) 203
HpyAV CCTTC 2 cut(s) 58, 124
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 4 cut(s) 32, 107, 233, 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
Hsp92II CATG 2 cut(s) 44, 323
HspAI GCGC 1 cut(s) 246
Kzo9I GATC 2 cut(s) 21, 182
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 2 cut(s) 32, 78
LweI GCATC 1 cut(s) 264
MaeI CTAG 1 cut(s) 191
MalI GATC 2 cut(s) 23, 184
MboI GATC 2 cut(s) 21, 182
MboII GAAGA 3 cut(s) 56, 59, 159
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 3 cut(s) 10, 129, 206
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 1 cut(s) 47
MseI TTAA 3 cut(s) 74, 89, 352
Mva1269I GAATGC 2 cut(s) 32, 107
MwoI GCNNNNNNNGC 1 cut(s) 252
NcoI CCATGG 1 cut(s) 40
NdeII GATC 2 cut(s) 21, 182
NlaIII CATG 2 cut(s) 44, 323
NlaIV GGNNCC 2 cut(s) 6, 46
NspI RCATGY 1 cut(s) 323
PctI GAATGC 2 cut(s) 32, 107
PfeI GAWTC 1 cut(s) 328
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 303
PspN4I GGNNCC 2 cut(s) 6, 46
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SacI GAGCTC 1 cut(s) 303
SaqAI TTAA 3 cut(s) 74, 89, 352
Sau3AI GATC 2 cut(s) 21, 182
ScaI AGTACT 1 cut(s) 189
SchI GAGTC 1 cut(s) 114
SduI GDGCHC 1 cut(s) 303
SetI ASST 4 cut(s) 21, 303, 315, 352
SfaNI GCATC 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 3 cut(s) 10, 129, 206
SsiI CCGC 1 cut(s) 286
SspI AATATT 2 cut(s) 154, 237
SspMI CTAG 1 cut(s) 191
SstI GAGCTC 1 cut(s) 303
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 1 cut(s) 136
TasI AATT 3 cut(s) 10, 129, 206
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 3 cut(s) 74, 89, 352
Tru9I TTAA 3 cut(s) 74, 89, 352
TspDTI ATGAA 3 cut(s) 40, 73, 341
XceI RCATGY 1 cut(s) 323
XspI CTAG 1 cut(s) 191
ZrmI AGTACT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.