MD15G1095500.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
6657257 .. 6657613
357 bp
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UTR
Exon/CDS
Intron
MD15G1095500.v1.1.491

Sequence Viewer

Length: 357 bp
ATGGAACTGAATCTCGACCTCTTCCTACTTGCATTTCTCCACGCCGCATTCATCGCATGCGTTCTTCTTCTCGTTATTTCCGTCGTGTTGACTAGTCTCTTGCTTGCATTCGCCATTGGCCTTGTTTTGTTTCTCATAGACGACATGTACAACATTTTCTTGTGTTTTTCTTCCTACATCGAAACGGTTGTGAAGCACAATTTTGAACTAGGTTTTGTTTTAATTGTCTACAAACTATTGTATCATGTTGTTGCCATTTTCTTGGCTTCAAAGCCTTTCTTTGAATGTAAGATTTCCCAAATCAAAGTAAAGGCAAGAAGTGTGATGAATGTTGTTGATGGCTTGAGGCCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.32

Weight (kDa)

6.81

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021143)

Species Orthologous Gene IDs
malus_domestica MD08G1115700.v1.1 MD15G1095500.v1.1
prunus_persica Prupe.1G450400_v2.0.a1
rosa_samantha Rh6AG457800 Rh6BG443000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 228
AciI CCGC 1 cut(s) 45
AfaI GTAC 1 cut(s) 149
AflIII ACRYGT 1 cut(s) 144
AgsI TTSAA 3 cut(s) 206, 270, 284
AhlI ACTAGT 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 101
AoxI GGCC 2 cut(s) 118, 347
BaeI ACNNNNGTAYC 2 cut(s) 224, 257
BccI CCATC 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 101
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 2 cut(s) 93, 209
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BshFI GGCC 2 cut(s) 120, 349
BsmAI GTCTC 1 cut(s) 101
BsmI GAATGC 2 cut(s) 47, 107
BsnI GGCC 2 cut(s) 120, 349
Bsp1407I TGTACA 1 cut(s) 147
BspACI CCGC 1 cut(s) 45
BspANI GGCC 2 cut(s) 120, 349
BsrGI TGTACA 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 26
BstAUI TGTACA 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 58, 105
BstMAI GTCTC 1 cut(s) 101
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 2 cut(s) 60, 148
BstXI CCANNNNNNTGG 1 cut(s) 262
BsuRI GGCC 2 cut(s) 120, 349
BtgZI GCGATG 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 58, 105
Csp6I GTAC 1 cut(s) 148
CviAII CATG 3 cut(s) 57, 145, 245
CviJI RGCY 5 cut(s) 120, 266, 274, 342, 349
CviKI_1 RGCY 5 cut(s) 120, 266, 274, 342, 349
CviQI GTAC 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco147I AGGCCT 1 cut(s) 349
FaeI CATG 3 cut(s) 60, 148, 248
FaiI YATR 4 cut(s) 58, 137, 146, 246
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FatI CATG 3 cut(s) 56, 144, 244
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 2 cut(s) 93, 209
GluI GCNGC 1 cut(s) 45
HaeIII GGCC 2 cut(s) 120, 349
Hin1II CATG 3 cut(s) 60, 148, 248
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 1 cut(s) 10
Hpy166II GTNNAC 2 cut(s) 90, 229
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 2 cut(s) 90, 229
Hpy99I CGWCG 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4V TGCA 2 cut(s) 32, 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
Hsp92II CATG 3 cut(s) 60, 148, 248
MaeI CTAG 2 cut(s) 93, 209
MboII GAAGA 4 cut(s) 13, 56, 59, 162
MluCI AATT 2 cut(s) 199, 222
MnlI CCTC 2 cut(s) 29, 339
MseI TTAA 2 cut(s) 221, 355
Mva1269I GAATGC 2 cut(s) 47, 107
MwoI GCNNNNNNNGC 1 cut(s) 53
NlaIII CATG 3 cut(s) 60, 148, 248
NspI RCATGY 2 cut(s) 60, 148
PaeI GCATGC 1 cut(s) 60
PceI AGGCCT 1 cut(s) 349
PciI ACATGT 1 cut(s) 144
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PctI GAATGC 2 cut(s) 47, 107
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 46
PscI ACATGT 1 cut(s) 144
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 2 cut(s) 221, 355
SatI GCNGC 1 cut(s) 45
SetI ASST 2 cut(s) 21, 214
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
SpeI ACTAGT 1 cut(s) 92
SphI GCATGC 1 cut(s) 60
Sse9I AATT 2 cut(s) 199, 222
SseBI AGGCCT 1 cut(s) 349
SsiI CCGC 1 cut(s) 45
SspMI CTAG 2 cut(s) 93, 209
StuI AGGCCT 1 cut(s) 349
TaaI ACNGT 1 cut(s) 187
TaqI TCGA 2 cut(s) 15, 180
TasI AATT 2 cut(s) 199, 222
TatI WGTACW 1 cut(s) 147
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 2 cut(s) 221, 355
Tru9I TTAA 2 cut(s) 221, 355
TspDTI ATGAA 2 cut(s) 40, 341
TspGWI ACGGA 1 cut(s) 70
XceI RCATGY 2 cut(s) 60, 148
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 2 cut(s) 93, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.