Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD08G1120800.v1.1 |
| rosa_chinensis | RchiOBHm_Chr0c36g0502901 RchiOBHm_Chr2g0153841 |
| rosa_laevigata | RLG00000020733 |
| rosa_multiflora | Rmu_co8043988.1_g000001 Rmu_sc0003887.1_g000016 |
| rosa_roxburghii | Rroxscaffold_6G00422800 |
| rosa_samantha | Rh2BG516000 Rh2DG528300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AluBI | AGCT | 1 cut(s) | 112 |
| AluI | AGCT | 1 cut(s) | 112 |
| Alw26I | GTCTC | 1 cut(s) | 207 |
| ApeKI | GCWGC | 1 cut(s) | 112 |
| AsuHPI | GGTGA | 1 cut(s) | 31 |
| BbvI | GCAGC | 1 cut(s) | 99 |
| BccI | CCATC | 2 cut(s) | 10, 145 |
| BceAI | ACGGC | 1 cut(s) | 196 |
| BcoDI | GTCTC | 1 cut(s) | 207 |
| BisI | GCNGC | 1 cut(s) | 113 |
| BlsI | GCNGC | 1 cut(s) | 114 |
| Bse3DI | GCAATG | 1 cut(s) | 190 |
| BseGI | GGATG | 2 cut(s) | 21, 156 |
| BseMI | GCAATG | 1 cut(s) | 190 |
| BseXI | GCAGC | 1 cut(s) | 99 |
| BsmAI | GTCTC | 1 cut(s) | 207 |
| BsmI | GAATGC | 1 cut(s) | 129 |
| Bsp143I | GATC | 1 cut(s) | 61 |
| BsrDI | GCAATG | 1 cut(s) | 190 |
| BssMI | GATC | 1 cut(s) | 61 |
| Bst4CI | ACNGT | 1 cut(s) | 201 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstF5I | GGATG | 2 cut(s) | 21, 156 |
| BstKTI | GATC | 1 cut(s) | 64 |
| BstMAI | GTCTC | 1 cut(s) | 207 |
| BstMBI | GATC | 1 cut(s) | 61 |
| BstV1I | GCAGC | 1 cut(s) | 99 |
| BtsCI | GGATG | 2 cut(s) | 21, 156 |
| BtsIMutI | CAGTG | 1 cut(s) | 197 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| CviAII | CATG | 2 cut(s) | 11, 147 |
| CviJI | RGCY | 3 cut(s) | 8, 112, 155 |
| CviKI_1 | RGCY | 3 cut(s) | 8, 112, 155 |
| DpnI | GATC | 1 cut(s) | 63 |
| DpnII | GATC | 1 cut(s) | 61 |
| FaeI | CATG | 2 cut(s) | 14, 150 |
| FaiI | YATR | 5 cut(s) | 12, 68, 74, 78, 148 |
| FatI | CATG | 2 cut(s) | 10, 146 |
| Fnu4HI | GCNGC | 1 cut(s) | 113 |
| FokI | GGATG | 2 cut(s) | 28, 163 |
| Fsp4HI | GCNGC | 1 cut(s) | 113 |
| GluI | GCNGC | 1 cut(s) | 113 |
| Hin1II | CATG | 2 cut(s) | 14, 150 |
| HphI | GGTGA | 1 cut(s) | 31 |
| HpyCH4III | ACNGT | 1 cut(s) | 201 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 213 |
| Hsp92II | CATG | 2 cut(s) | 14, 150 |
| Kzo9I | GATC | 1 cut(s) | 61 |
| LpnPI | CCDG | 2 cut(s) | 118, 141 |
| Lsp1109I | GCAGC | 1 cut(s) | 99 |
| MaeIII | GTNAC | 2 cut(s) | 164, 195 |
| MalI | GATC | 1 cut(s) | 63 |
| MboI | GATC | 1 cut(s) | 61 |
| MnlI | CCTC | 1 cut(s) | 90 |
| MseI | TTAA | 3 cut(s) | 53, 158, 235 |
| Mva1269I | GAATGC | 1 cut(s) | 129 |
| NdeII | GATC | 1 cut(s) | 61 |
| NlaIII | CATG | 2 cut(s) | 14, 150 |
| NmuCI | GTSAC | 2 cut(s) | 164, 195 |
| PctI | GAATGC | 1 cut(s) | 129 |
| PkrI | GCNGC | 1 cut(s) | 114 |
| SaqAI | TTAA | 3 cut(s) | 53, 158, 235 |
| SatI | GCNGC | 1 cut(s) | 113 |
| Sau3AI | GATC | 1 cut(s) | 61 |
| SetI | ASST | 2 cut(s) | 114, 197 |
| SgeI | CNNG | 6 cut(s) | 17, 23, 117, 128, 140, 159 |
| TaaI | ACNGT | 1 cut(s) | 201 |
| Tru1I | TTAA | 3 cut(s) | 53, 158, 235 |
| Tru9I | TTAA | 3 cut(s) | 53, 158, 235 |
| TscAI | CASTG | 1 cut(s) | 204 |
| TseFI | GTSAC | 2 cut(s) | 164, 195 |
| TseI | GCWGC | 1 cut(s) | 112 |
| Tsp45I | GTSAC | 2 cut(s) | 164, 195 |
| TspDTI | ATGAA | 1 cut(s) | 135 |
| TspRI | CASTG | 1 cut(s) | 204 |