Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD08G1120800.v1.1 |
| rosa_chinensis | RchiOBHm_Chr0c36g0502901 RchiOBHm_Chr2g0153841 |
| rosa_laevigata | RLG00000020733 |
| rosa_multiflora | Rmu_co8043988.1_g000001 Rmu_sc0003887.1_g000016 |
| rosa_roxburghii | Rroxscaffold_6G00422800 |
| rosa_samantha | Rh2BG516000 Rh2DG528300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 263 |
| AccII | CGCG | 1 cut(s) | 202 |
| AccIII | TCCGGA | 1 cut(s) | 247 |
| AciI | CCGC | 3 cut(s) | 202, 263, 322 |
| AcsI | RAATTY | 1 cut(s) | 330 |
| AfaI | GTAC | 1 cut(s) | 104 |
| AgsI | TTSAA | 1 cut(s) | 238 |
| AluBI | AGCT | 2 cut(s) | 131, 214 |
| AluI | AGCT | 2 cut(s) | 131, 214 |
| Alw26I | GTCTC | 1 cut(s) | 66 |
| Aor13HI | TCCGGA | 1 cut(s) | 247 |
| ApeKI | GCWGC | 1 cut(s) | 195 |
| ApoI | RAATTY | 1 cut(s) | 330 |
| AsuHPI | GGTGA | 1 cut(s) | 221 |
| BbsI | GAAGAC | 1 cut(s) | 160 |
| BbvI | GCAGC | 1 cut(s) | 182 |
| BccI | CCATC | 1 cut(s) | 178 |
| BcoDI | GTCTC | 1 cut(s) | 66 |
| BisI | GCNGC | 1 cut(s) | 196 |
| BlsI | GCNGC | 1 cut(s) | 197 |
| BmsI | GCATC | 1 cut(s) | 250 |
| BpiI | GAAGAC | 1 cut(s) | 160 |
| BsaAI | YACGTR | 1 cut(s) | 106 |
| BsaWI | WCCGGW | 1 cut(s) | 247 |
| BseAI | TCCGGA | 1 cut(s) | 247 |
| BseXI | GCAGC | 1 cut(s) | 182 |
| BsgI | GTGCAG | 2 cut(s) | 181, 306 |
| Bsh1236I | CGCG | 1 cut(s) | 202 |
| BsiSI | CCGG | 2 cut(s) | 155, 248 |
| BsmAI | GTCTC | 1 cut(s) | 66 |
| BsmI | GAATGC | 2 cut(s) | 156, 280 |
| Bsp13I | TCCGGA | 1 cut(s) | 247 |
| BspACI | CCGC | 3 cut(s) | 202, 263, 322 |
| BspEI | TCCGGA | 1 cut(s) | 247 |
| BspFNI | CGCG | 1 cut(s) | 202 |
| Bst4CI | ACNGT | 1 cut(s) | 234 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 293 |
| BstBAI | YACGTR | 1 cut(s) | 106 |
| BstC8I | GCNNGC | 3 cut(s) | 40, 200, 324 |
| BstFNI | CGCG | 1 cut(s) | 202 |
| BstMAI | GTCTC | 1 cut(s) | 66 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 284, 293 |
| BstUI | CGCG | 1 cut(s) | 202 |
| BstV1I | GCAGC | 1 cut(s) | 182 |
| BstV2I | GAAGAC | 1 cut(s) | 160 |
| Cac8I | GCNNGC | 3 cut(s) | 40, 200, 324 |
| Csp6I | GTAC | 1 cut(s) | 103 |
| CviAII | CATG | 2 cut(s) | 174, 280 |
| CviJI | RGCY | 4 cut(s) | 131, 139, 214, 224 |
| CviKI_1 | RGCY | 4 cut(s) | 131, 139, 214, 224 |
| CviQI | GTAC | 1 cut(s) | 103 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 263 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 263 |
| FaeI | CATG | 2 cut(s) | 177, 283 |
| FaiI | YATR | 7 cut(s) | 12, 92, 111, 135, 175, 281, 294 |
| FatI | CATG | 2 cut(s) | 173, 279 |
| FauI | CCCGC | 1 cut(s) | 315 |
| Fnu4HI | GCNGC | 1 cut(s) | 196 |
| Fsp4HI | GCNGC | 1 cut(s) | 196 |
| GluI | GCNGC | 1 cut(s) | 196 |
| HapII | CCGG | 2 cut(s) | 155, 248 |
| Hin1II | CATG | 2 cut(s) | 177, 283 |
| HinfI | GANTC | 1 cut(s) | 178 |
| HpaII | CCGG | 2 cut(s) | 155, 248 |
| HphI | GGTGA | 1 cut(s) | 221 |
| Hpy188I | TCNGA | 1 cut(s) | 183 |
| Hpy188III | TCNNGA | 3 cut(s) | 124, 248, 342 |
| HpyAV | CCTTC | 1 cut(s) | 295 |
| HpyCH4III | ACNGT | 1 cut(s) | 234 |
| HpyCH4IV | ACGT | 1 cut(s) | 105 |
| HpyCH4V | TGCA | 5 cut(s) | 38, 98, 109, 198, 287 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 284, 293 |
| HpySE526I | ACGT | 1 cut(s) | 105 |
| Hsp92II | CATG | 2 cut(s) | 177, 283 |
| Kpn2I | TCCGGA | 1 cut(s) | 247 |
| LpnPI | CCDG | 5 cut(s) | 84, 168, 238, 261, 273 |
| Lsp1109I | GCAGC | 1 cut(s) | 182 |
| LweI | GCATC | 1 cut(s) | 250 |
| MaeII | ACGT | 1 cut(s) | 105 |
| MaeIII | GTNAC | 1 cut(s) | 187 |
| MboII | GAAGA | 2 cut(s) | 160, 310 |
| MluCI | AATT | 2 cut(s) | 238, 330 |
| MlyI | GAGTC | 1 cut(s) | 172 |
| MmeI | TCCRAC | 1 cut(s) | 251 |
| MnlI | CCTC | 3 cut(s) | 112, 221, 300 |
| MroI | TCCGGA | 1 cut(s) | 247 |
| MslI | CAYNNNNRTG | 1 cut(s) | 114 |
| MspI | CCGG | 2 cut(s) | 155, 248 |
| Mva1269I | GAATGC | 2 cut(s) | 156, 280 |
| MvnI | CGCG | 1 cut(s) | 202 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 284, 293 |
| NlaIII | CATG | 2 cut(s) | 177, 283 |
| PctI | GAATGC | 2 cut(s) | 156, 280 |
| PkrI | GCNGC | 1 cut(s) | 197 |
| PleI | GAGTC | 1 cut(s) | 172 |
| PpsI | GAGTC | 1 cut(s) | 172 |
| Ppu21I | YACGTR | 1 cut(s) | 106 |
| RsaI | GTAC | 1 cut(s) | 104 |
| RsaNI | GTAC | 1 cut(s) | 103 |
| RseI | CAYNNNNRTG | 1 cut(s) | 114 |
| SatI | GCNGC | 1 cut(s) | 196 |
| SchI | GAGTC | 1 cut(s) | 172 |
| SetI | ASST | 5 cut(s) | 108, 123, 133, 216, 311 |
| SfaNI | GCATC | 1 cut(s) | 250 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 114 |
| Sse9I | AATT | 2 cut(s) | 238, 330 |
| SsiI | CCGC | 3 cut(s) | 202, 263, 322 |
| TaaI | ACNGT | 1 cut(s) | 234 |
| TaiI | ACGT | 1 cut(s) | 108 |
| TaqI | TCGA | 1 cut(s) | 123 |
| TasI | AATT | 2 cut(s) | 238, 330 |
| TseI | GCWGC | 1 cut(s) | 195 |
| TspDTI | ATGAA | 1 cut(s) | 330 |
| XapI | RAATTY | 1 cut(s) | 330 |