Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8043988.1

Orthogroup ID

OG0018902

Physical Location & Seq

Genomic Coordinates Forward (+)

89 .. 555

Gene Structure 467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8043988.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 467 bp

atgaatgagaggcagagattggcgaatctcctgcggaactgttctaagaatttgctacttcgtgagggattgcaagctcatgggtcagtgatgagagtgggacttgggtttgatttgatgctgaacaatgatcttgtagatatgtatagtaagtgtggtagaatggggagtgcacgtgaggtgtttgatagaatgcctgagagaaatgtggtttcctggactgctttaatgtgtggctacttaaacagtggcaatgccaaagggtcattatctctgtttagtgaaatgggattttcgggagttaagccgaatgagtacactttctcgactaatctcaaggcgtcagggatgttggggattgctgataatggaatgcagatacacagtatgtgcgttaagtctggttatgaatgggctgcagtggtgagcaatgctatccttgacatgtatgtgaaatgtggaagagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167 DYW_deaminase PPR PPR_2 Pkinase

Protein Analysis

156

Amino Acids

17.22

Weight (kDa)

8.88

Isoelectric Point (pI)

14.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018902)

Species	Orthologous Gene IDs
malus_domestica	MD08G1120800.v1.1
rosa_chinensis	RchiOBHm_Chr0c36g0502901 RchiOBHm_Chr2g0153841
rosa_laevigata	RLG00000020733
rosa_multiflora	Rmu_co8043988.1_g000001 Rmu_sc0003887.1_g000016
rosa_roxburghii	Rroxscaffold_6G00422800
rosa_samantha	Rh2BG516000 Rh2DG528300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	49
AcvI	CACGTG	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	341
AfaI	GTAC	1 cut(s)	317
AflIII	ACRYGT	1 cut(s)	444
AjnI	CCWGG	1 cut(s)	215
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
Alw21I	GWGCWC	1 cut(s)	175
Alw44I	GTGCAC	1 cut(s)	171
ApaLI	GTGCAC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	175
BbrPI	CACGTG	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	403
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciT130I	CCWGG	1 cut(s)	217
BfmI	CTRYAG	1 cut(s)	417
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
Bme1390I	CCNGG	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	320
BsaAI	YACGTR	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	341
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bse3DI	GCAATG	2 cut(s)	259, 436
BseBI	CCWGG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	354
BseMI	GCAATG	2 cut(s)	259, 436
BseMII	CTCAG	1 cut(s)	189
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	114
BsmI	GAATGC	2 cut(s)	198, 378
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	190
BspMAI	CTGCAG	1 cut(s)	421
BsrDI	GCAATG	2 cut(s)	259, 436
BssMI	GATC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	3 cut(s)	41, 248, 386
Bst6I	CTCTTC	1 cut(s)	457
BstACI	GRCGYC	1 cut(s)	341
BstBAI	YACGTR	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	45, 198
BstF5I	GGATG	1 cut(s)	354
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	448
BstSCI	CCNGG	1 cut(s)	215
BstSFI	CTRYAG	1 cut(s)	417
BstSLI	GKGCMC	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	403
BtsCI	GGATG	1 cut(s)	354
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	3 cut(s)	93, 253, 426
Cac8I	GCNNGC	1 cut(s)	75
CseI	GACGC	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	2 cut(s)	80, 445
CviJI	RGCY	4 cut(s)	77, 237, 307, 416
CviKI_1	RGCY	4 cut(s)	77, 237, 307, 416
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	45, 198
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	457
EarI	CTCTTC	1 cut(s)	457
Eco72I	CACGTG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	215
FaeI	CATG	2 cut(s)	83, 448
FaiI	YATR	7 cut(s)	81, 143, 147, 389, 408, 446, 450
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	2 cut(s)	79, 444
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	1 cut(s)	361
Fsp4HI	GCNGC	1 cut(s)	417
GluI	GCNGC	1 cut(s)	417
HgaI	GACGC	1 cut(s)	330
Hin1I	GRCGYC	1 cut(s)	341
Hin1II	CATG	2 cut(s)	83, 448
HinfI	GANTC	1 cut(s)	25
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	2 cut(s)	173, 318
Hpy188III	TCNNGA	3 cut(s)	62, 297, 325
Hpy8I	GTNNAC	2 cut(s)	173, 318
HpyCH4III	ACNGT	3 cut(s)	41, 248, 386
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	4 cut(s)	73, 173, 376, 419
HpyF3I	CTNAG	2 cut(s)	45, 198
HpySE526I	ACGT	1 cut(s)	175
Hsp92I	GRCGYC	1 cut(s)	341
Hsp92II	CATG	2 cut(s)	83, 448
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	6 cut(s)	44, 202, 210, 229, 330, 387
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	1 cut(s)	108
MaeII	ACGT	1 cut(s)	175
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	1 cut(s)	49
MnlI	CCTC	3 cut(s)	3, 58, 172
MseI	TTAA	4 cut(s)	227, 242, 303, 396
MslI	CAYNNNNRTG	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	217
Mva1269I	GAATGC	2 cut(s)	198, 378
MvaI	CCWGG	1 cut(s)	217
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	83, 448
NspI	RCATGY	1 cut(s)	448
PciI	ACATGT	1 cut(s)	444
PctI	GAATGC	2 cut(s)	198, 378
PfeI	GAWTC	1 cut(s)	25
PfoI	TCCNGGA	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	418
PmaCI	CACGTG	1 cut(s)	176
PmlI	CACGTG	1 cut(s)	176
Ppu21I	YACGTR	1 cut(s)	176
PscI	ACATGT	1 cut(s)	444
Psp6I	CCWGG	1 cut(s)	215
PspCI	CACGTG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	421
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	449
SaqAI	TTAA	4 cut(s)	227, 242, 303, 396
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	3 cut(s)	79, 178, 183
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	49
SsiI	CCGC	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	215
TaaI	ACNGT	3 cut(s)	41, 248, 386
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	326
TasI	AATT	1 cut(s)	49
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	4 cut(s)	227, 242, 303, 396
Tru9I	TTAA	4 cut(s)	227, 242, 303, 396
TscAI	CASTG	3 cut(s)	93, 253, 426
TseI	GCWGC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	17, 423
TspRI	CASTG	3 cut(s)	93, 253, 426
VneI	GTGCAC	1 cut(s)	171
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.