RchiOBHm_Chr2g0153841

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018902
Physical Location & Seq
Forward (+)
71113683 .. 71114004
322 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52290

Sequence Viewer

Length: 321 bp
ATGCTAAAAATGGTAGGGTTGGTAATGCACGCCAAATCTCACAGAAACTTGGTGTCTTGGAACACTACGATTGCAGGGTACGTGCATAATAATGAGGTCGAGAGAGCTTATGGGCTTTTTGTGAGAATGCCGGAAAGAGATCTCTTCTCATGGACTCTGATGATAACTTGCTGCACGCGGAATGGTGAGCTTGAGAGAGCCAGAGGACTGTTCAATTTGCTTCCGGATAAGCGCGATGCGGCCTGTTGGAATGCCATGAGTGCAGGGTATGCGAAGAAGGGGAGGTCTGATGAAATGCGGGCGAAAAATTTGGTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.12

Weight (kDa)

9.6

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 16 - 47 7.6e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018902)

Species Orthologous Gene IDs
malus_domestica MD08G1120800.v1.1
rosa_chinensis RchiOBHm_Chr0c36g0502901 RchiOBHm_Chr2g0153841
rosa_laevigata RLG00000020733
rosa_multiflora Rmu_co8043988.1_g000001 Rmu_sc0003887.1_g000016
rosa_roxburghii Rroxscaffold_6G00422800
rosa_samantha Rh2BG516000 Rh2DG528300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 178, 234
AccIII TCCGGA 1 cut(s) 223
AciI CCGC 3 cut(s) 178, 239, 298
AcsI RAATTY 1 cut(s) 307
AfaI GTAC 1 cut(s) 80
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 2 cut(s) 107, 190
AluI AGCT 2 cut(s) 107, 190
Aor13HI TCCGGA 1 cut(s) 223
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 171
ApoI RAATTY 1 cut(s) 307
AspLEI GCGC 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 197
BbvI GCAGC 1 cut(s) 158
BglII AGATCT 1 cut(s) 139
BisI GCNGC 2 cut(s) 172, 240
BlsI GCNGC 2 cut(s) 173, 241
BmsI GCATC 1 cut(s) 226
BpuEI CTTGAG 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 223
BseAI TCCGGA 1 cut(s) 223
BseXI GCAGC 1 cut(s) 158
BsgI GTGCAG 2 cut(s) 157, 282
Bsh1236I CGCG 2 cut(s) 178, 234
BshFI GGCC 1 cut(s) 242
BsiSI CCGG 2 cut(s) 131, 224
BsmI GAATGC 2 cut(s) 132, 256
BsnI GGCC 1 cut(s) 242
Bsp13I TCCGGA 1 cut(s) 223
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 3 cut(s) 178, 239, 298
BspANI GGCC 1 cut(s) 242
BspEI TCCGGA 1 cut(s) 223
BspFNI CGCG 2 cut(s) 178, 234
BssMI GATC 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 149
BstAPI GCANNNNNTGC 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 82
BstC8I GCNNGC 3 cut(s) 30, 176, 300
BstFNI CGCG 2 cut(s) 178, 234
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 2 cut(s) 260, 269
BstUI CGCG 2 cut(s) 178, 234
BstV1I GCAGC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 1 cut(s) 242
BtgZI GCGATG 1 cut(s) 249
Cac8I GCNNGC 3 cut(s) 30, 176, 300
CfoI GCGC 1 cut(s) 234
Csp6I GTAC 1 cut(s) 79
CviAII CATG 2 cut(s) 150, 256
CviJI RGCY 5 cut(s) 107, 115, 190, 200, 242
CviKI_1 RGCY 5 cut(s) 107, 115, 190, 200, 242
CviQI GTAC 1 cut(s) 79
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
FaeI CATG 2 cut(s) 153, 259
FaiI YATR 5 cut(s) 87, 111, 151, 257, 270
FatI CATG 2 cut(s) 149, 255
FauI CCCGC 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 172, 240
Fsp4HI GCNGC 2 cut(s) 172, 240
GlaI GCGC 1 cut(s) 233
GluI GCNGC 2 cut(s) 172, 240
HaeIII GGCC 1 cut(s) 242
HapII CCGG 2 cut(s) 131, 224
HhaI GCGC 1 cut(s) 234
Hin1II CATG 2 cut(s) 153, 259
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HinfI GANTC 1 cut(s) 154
HpaII CCGG 2 cut(s) 131, 224
HphI GGTGA 1 cut(s) 197
Hpy188I TCNGA 2 cut(s) 159, 289
Hpy188III TCNNGA 3 cut(s) 100, 224, 318
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 5 cut(s) 28, 74, 85, 174, 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 269
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 2 cut(s) 153, 259
HspAI GCGC 1 cut(s) 232
Kpn2I TCCGGA 1 cut(s) 223
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 6 cut(s) 60, 144, 214, 237, 249, 256
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 1 cut(s) 226
MaeII ACGT 1 cut(s) 81
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 2 cut(s) 136, 286
MflI RGATCY 1 cut(s) 139
MluCI AATT 2 cut(s) 214, 307
MlyI GAGTC 1 cut(s) 148
MmeI TCCRAC 1 cut(s) 227
MnlI CCTC 3 cut(s) 88, 197, 276
MroI TCCGGA 1 cut(s) 223
MslI CAYNNNNRTG 1 cut(s) 90
MspI CCGG 2 cut(s) 131, 224
Mva1269I GAATGC 2 cut(s) 132, 256
MvnI CGCG 2 cut(s) 178, 234
MwoI GCNNNNNNNGC 2 cut(s) 260, 269
NdeII GATC 1 cut(s) 139
NlaIII CATG 2 cut(s) 153, 259
PctI GAATGC 2 cut(s) 132, 256
PkrI GCNGC 2 cut(s) 173, 241
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
Ppu21I YACGTR 1 cut(s) 82
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 90
SatI GCNGC 2 cut(s) 172, 240
Sau3AI GATC 1 cut(s) 139
SchI GAGTC 1 cut(s) 148
SetI ASST 5 cut(s) 84, 99, 109, 192, 287
SfaNI GCATC 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 2 cut(s) 214, 307
SsiI CCGC 3 cut(s) 178, 239, 298
TaaI ACNGT 1 cut(s) 210
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 99
TasI AATT 2 cut(s) 214, 307
TauI GCSGC 1 cut(s) 242
TseI GCWGC 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 306
XapI RAATTY 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.