MD08G1233400.v1.1

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0021180
Physical Location & Seq
Forward (+)
29999782 .. 30000511
730 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1233400.v1.1.491

Sequence Viewer

Length: 543 bp
ATGTTTGGGACATTCAACGAGTTGTTTGATTTCCCCGACGAAATTAAAGCACAATTTCCTCAGGATAAACCTCTAGTTGAGGGTTACGTAAGGCTGCCTACCCGTGAATCCATGTCATTTCGTTCAAGCACTGAAAAAATAAAGAACGTCACACGTCAACTTTGGCCGGAAGGAAATGACCAGTTTCGTGTTGATCTGTATTCAAAAGTGATGACAGAATTAAATCAAGTTGTGACGAAAATGGTATTTGAAAACTACAAGGTAGAGAAATACCACGATGATCACATTCAATCGACCATGCCCATTACCCTACTTATAAAATATGATGAACCCAAGACAGATGAAACTGAAACTGTTATACACAATCATACAGACAAGTGTTTTACTACCATACTCCATCAAGAATCGTATGGTGTTGAGATAAGCACAAAAGATAACGAGTGGATTGGTTATGATCCTCTGCCTTCATCATTATTATTCCTAGCAGGTGATGGACTTCAGGTGCGTCAACACCCTTTCATTAATCTTGCTTTAGTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

181

Amino Acids

21.0

Weight (kDa)

5.01

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 105 - 168 4.6e-06 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021180)

Species Orthologous Gene IDs
malus_domestica MD08G1233200.v1.1 MD08G1233400.v1.1 MD08G1233500.v1.1 MD08G1233600.v1.1
pyrus_communis pycom08g20230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 317
AarI CACCTGC 1 cut(s) 476
Acc36I ACCTGC 1 cut(s) 476
AclWI GGATC 1 cut(s) 449
AcoI YGGCCR 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 482
AflIII ACRYGT 1 cut(s) 152
AgsI TTSAA 5 cut(s) 16, 126, 204, 251, 290
AjiI CACGTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 449
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 94
AseI ATTAAT 1 cut(s) 522
AsuHPI GGTGA 1 cut(s) 500
AxyI CCTNAGG 1 cut(s) 60
BbvI GCAGC 1 cut(s) 81
BccI CCATC 2 cut(s) 405, 485
BclI TGATCA 1 cut(s) 280
BfaI CTAG 2 cut(s) 74, 482
BfuAI ACCTGC 1 cut(s) 476
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
BmgBI CACGTC 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 181
Bse21I CCTNAGG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 81
BshFI GGCC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 1 cut(s) 166
Bsp143I GATC 3 cut(s) 193, 280, 454
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 73
BspHI TCATGA 1 cut(s) 539
BspMI ACCTGC 1 cut(s) 476
BspPI GGATC 1 cut(s) 449
BsrI ACTGG 1 cut(s) 181
BssMI GATC 3 cut(s) 193, 280, 454
Bst4CI ACNGT 1 cut(s) 355
BstBAI YACGTR 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 60
BstKTI GATC 3 cut(s) 196, 283, 457
BstMBI GATC 3 cut(s) 193, 280, 454
BstSNI TACGTA 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 81
Bsu36I CCTNAGG 1 cut(s) 60
BsuRI GGCC 1 cut(s) 166
BtrI CACGTC 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 129
BveI ACCTGC 1 cut(s) 476
CciI TCATGA 1 cut(s) 539
CseI GACGC 1 cut(s) 494
CviAII CATG 3 cut(s) 112, 298, 540
CviJI RGCY 2 cut(s) 94, 166
CviKI_1 RGCY 2 cut(s) 94, 166
DdeI CTNAG 1 cut(s) 60
DpnI GATC 3 cut(s) 195, 282, 456
DpnII GATC 3 cut(s) 193, 280, 454
EaeI YGGCCR 1 cut(s) 164
Eco105I TACGTA 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 482
Eco81I CCTNAGG 1 cut(s) 60
FaeI CATG 3 cut(s) 115, 301, 543
FaqI GGGAC 1 cut(s) 22
FatI CATG 3 cut(s) 111, 297, 539
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 95
FspBI CTAG 2 cut(s) 74, 482
GluI GCNGC 1 cut(s) 95
HaeIII GGCC 1 cut(s) 166
HapII CCGG 1 cut(s) 167
HgaI GACGC 1 cut(s) 494
Hin1II CATG 3 cut(s) 115, 301, 543
HincII GTYRAC 2 cut(s) 158, 509
HindII GTYRAC 2 cut(s) 158, 509
HinfI GANTC 2 cut(s) 107, 404
HpaII CCGG 1 cut(s) 167
HphI GGTGA 1 cut(s) 500
Hpy166II GTNNAC 2 cut(s) 158, 509
Hpy188III TCNNGA 3 cut(s) 62, 401, 540
Hpy8I GTNNAC 2 cut(s) 158, 509
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 2 cut(s) 164, 474
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 3 cut(s) 87, 147, 154
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 3 cut(s) 87, 147, 154
Hsp92II CATG 3 cut(s) 115, 301, 543
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 3 cut(s) 193, 280, 454
LpnPI CCDG 5 cut(s) 47, 180, 194, 471, 485
Lsp1109I GCAGC 1 cut(s) 81
MaeI CTAG 2 cut(s) 74, 482
MaeII ACGT 3 cut(s) 87, 147, 154
MaeIII GTNAC 3 cut(s) 83, 148, 232
MalI GATC 3 cut(s) 195, 282, 456
MboI GATC 3 cut(s) 193, 280, 454
MluCI AATT 3 cut(s) 42, 53, 218
MnlI CCTC 4 cut(s) 69, 73, 81, 468
MseI TTAA 3 cut(s) 45, 221, 522
MspI CCGG 1 cut(s) 167
NdeII GATC 3 cut(s) 193, 280, 454
NlaIII CATG 3 cut(s) 115, 301, 543
NmuCI GTSAC 2 cut(s) 148, 232
PagI TCATGA 1 cut(s) 539
PaqCI CACCTGC 1 cut(s) 476
PfeI GAWTC 2 cut(s) 107, 404
PkrI GCNGC 1 cut(s) 96
Ppu21I YACGTR 1 cut(s) 88
PshBI ATTAAT 1 cut(s) 522
PsiI TTATAA 1 cut(s) 317
SaqAI TTAA 3 cut(s) 45, 221, 522
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 3 cut(s) 193, 280, 454
SetI ASST 7 cut(s) 73, 90, 150, 157, 264, 490, 504
SnaBI TACGTA 1 cut(s) 88
Sse9I AATT 3 cut(s) 42, 53, 218
SspMI CTAG 2 cut(s) 74, 482
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 3 cut(s) 90, 150, 157
TaqI TCGA 1 cut(s) 293
TasI AATT 3 cut(s) 42, 53, 218
TfiI GAWTC 2 cut(s) 107, 404
Tru1I TTAA 3 cut(s) 45, 221, 522
Tru9I TTAA 3 cut(s) 45, 221, 522
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 2 cut(s) 148, 232
TseI GCWGC 1 cut(s) 94
Tsp45I GTSAC 2 cut(s) 148, 232
TspDTI ATGAA 5 cut(s) 342, 357, 456, 508, 528
TspRI CASTG 1 cut(s) 136
VspI ATTAAT 1 cut(s) 522
XspI CTAG 2 cut(s) 74, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.