MD08G1233500.v1.1

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0021180
Physical Location & Seq
Forward (+)
30037343 .. 30038063
721 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1233500.v1.1.491

Sequence Viewer

Length: 540 bp
ATGGTTGGGACATTCAACGAGTTGTTTGATTTCCCCGACGAAATTAAAGCACAATTTCCTCAGGATAAACCTCTAGTTGAGGGTTACGTAAGGCTGCCTACCCGTGAATCCATGTCATTTCGTTCAAGCACTGAAAAAATAAAGAACCTCACACGTCAACTTTGGCCGGAAGGAAATGACCAGTTTCGTGAGAGTGCTGATCTGTATTCAAAAGTGATGACAGAATTAAATCAAGTTGTGACAAAAATGGTATTTGAAAACTACAAGGTAGAGAAATACCACGATGATCACATTCAATCGACCATGCCCATTACCCTACTTATAAAATATGATGAACCCAAGACAGATGAAACTGAAACTGTTCTACACAATCATACAGACATGTGTTTTACTACCATACTCCATCAAGAATCGTATGGTGTTGAGATAAGCACAAAAGATAACGAGTGGATTGGTTATGATCCTCTGCCTTCATCATTATTATTCCTAGCAGGTGATGGACTTCAGGTGCGTCAACACCCTTTCATTAATCTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

180

Amino Acids

20.85

Weight (kDa)

4.85

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 107 - 170 4.3e-06 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021180)

Species Orthologous Gene IDs
malus_domestica MD08G1233200.v1.1 MD08G1233400.v1.1 MD08G1233500.v1.1 MD08G1233600.v1.1
pyrus_communis pycom08g20230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 323
AarI CACCTGC 1 cut(s) 482
Acc36I ACCTGC 1 cut(s) 482
AclWI GGATC 1 cut(s) 455
AcoI YGGCCR 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 488
AflIII ACRYGT 2 cut(s) 152, 381
AgsI TTSAA 5 cut(s) 16, 126, 210, 257, 296
AjiI CACGTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 455
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 94
AseI ATTAAT 1 cut(s) 528
Asp700I GAANNNNTTC 1 cut(s) 360
AsuHPI GGTGA 1 cut(s) 506
AxyI CCTNAGG 1 cut(s) 60
BbvI GCAGC 1 cut(s) 81
BccI CCATC 2 cut(s) 411, 491
BclI TGATCA 1 cut(s) 286
BfaI CTAG 2 cut(s) 74, 488
BfuAI ACCTGC 1 cut(s) 482
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
BmgBI CACGTC 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 181
Bse21I CCTNAGG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 81
BshFI GGCC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 1 cut(s) 166
Bsp143I GATC 3 cut(s) 199, 286, 460
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 73
BspMI ACCTGC 1 cut(s) 482
BspPI GGATC 1 cut(s) 455
BsrI ACTGG 1 cut(s) 181
BssMI GATC 3 cut(s) 199, 286, 460
Bst4CI ACNGT 1 cut(s) 361
BstBAI YACGTR 1 cut(s) 88
BstDEI CTNAG 2 cut(s) 60, 537
BstKTI GATC 3 cut(s) 202, 289, 463
BstMBI GATC 3 cut(s) 199, 286, 460
BstNSI RCATGY 1 cut(s) 385
BstSNI TACGTA 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 81
Bsu36I CCTNAGG 1 cut(s) 60
BsuRI GGCC 1 cut(s) 166
BtrI CACGTC 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 129
BveI ACCTGC 1 cut(s) 482
CseI GACGC 1 cut(s) 500
CviAII CATG 3 cut(s) 112, 304, 382
CviJI RGCY 2 cut(s) 94, 166
CviKI_1 RGCY 2 cut(s) 94, 166
DdeI CTNAG 2 cut(s) 60, 537
DpnI GATC 3 cut(s) 201, 288, 462
DpnII GATC 3 cut(s) 199, 286, 460
EaeI YGGCCR 1 cut(s) 164
Eco105I TACGTA 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 488
Eco81I CCTNAGG 1 cut(s) 60
FaeI CATG 3 cut(s) 115, 307, 385
FaiI YATR 9 cut(s) 113, 305, 323, 330, 375, 383, 398, 417, 459
FaqI GGGAC 1 cut(s) 22
FatI CATG 3 cut(s) 111, 303, 381
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 95
FspBI CTAG 2 cut(s) 74, 488
GluI GCNGC 1 cut(s) 95
HaeIII GGCC 1 cut(s) 166
HapII CCGG 1 cut(s) 167
HgaI GACGC 1 cut(s) 500
Hin1II CATG 3 cut(s) 115, 307, 385
HincII GTYRAC 2 cut(s) 158, 515
HindII GTYRAC 2 cut(s) 158, 515
HinfI GANTC 2 cut(s) 107, 410
HpaII CCGG 1 cut(s) 167
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 2 cut(s) 158, 515
Hpy188III TCNNGA 3 cut(s) 62, 188, 407
Hpy8I GTNNAC 2 cut(s) 158, 515
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 2 cut(s) 164, 480
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 2 cut(s) 87, 154
HpyF3I CTNAG 2 cut(s) 60, 537
HpySE526I ACGT 2 cut(s) 87, 154
Hsp92II CATG 3 cut(s) 115, 307, 385
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 3 cut(s) 199, 286, 460
LpnPI CCDG 5 cut(s) 47, 180, 194, 477, 491
Lsp1109I GCAGC 1 cut(s) 81
MaeI CTAG 2 cut(s) 74, 488
MaeII ACGT 2 cut(s) 87, 154
MaeIII GTNAC 2 cut(s) 83, 238
MalI GATC 3 cut(s) 201, 288, 462
MboI GATC 3 cut(s) 199, 286, 460
MluCI AATT 3 cut(s) 42, 53, 224
MnlI CCTC 5 cut(s) 69, 73, 81, 158, 474
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 3 cut(s) 45, 227, 528
MspI CCGG 1 cut(s) 167
NdeII GATC 3 cut(s) 199, 286, 460
NlaIII CATG 3 cut(s) 115, 307, 385
NmuCI GTSAC 1 cut(s) 238
NspI RCATGY 1 cut(s) 385
PaqCI CACCTGC 1 cut(s) 482
PciI ACATGT 1 cut(s) 381
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 2 cut(s) 107, 410
PkrI GCNGC 1 cut(s) 96
Ppu21I YACGTR 1 cut(s) 88
PscI ACATGT 1 cut(s) 381
PshBI ATTAAT 1 cut(s) 528
PsiI TTATAA 1 cut(s) 323
SaqAI TTAA 3 cut(s) 45, 227, 528
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 3 cut(s) 199, 286, 460
SetI ASST 7 cut(s) 73, 90, 150, 157, 270, 496, 510
SnaBI TACGTA 1 cut(s) 88
Sse9I AATT 3 cut(s) 42, 53, 224
SspMI CTAG 2 cut(s) 74, 488
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 2 cut(s) 90, 157
TaqI TCGA 1 cut(s) 299
TasI AATT 3 cut(s) 42, 53, 224
TfiI GAWTC 2 cut(s) 107, 410
Tru1I TTAA 3 cut(s) 45, 227, 528
Tru9I TTAA 3 cut(s) 45, 227, 528
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 4 cut(s) 348, 363, 462, 514
TspRI CASTG 1 cut(s) 136
VspI ATTAAT 1 cut(s) 528
XceI RCATGY 1 cut(s) 385
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 2 cut(s) 74, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.