MD09G1058100.v1.1

potassium channel activity

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
3833347 .. 3833937
591 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1058100.v1.1.491

Sequence Viewer

Length: 591 bp
ATGTATGCTATAGTTTTATCATTATGCTTCTGGTTTAGGCAAGATTTTATTGACCGTAACAAAGGGAGAAAGTTACGAGGTTTTGTTTTAGCACTCGCTATCACGGCGGAAACAATGACAACAGTAGGTTATGGCGATATAGTTCCAAATACCACTTGGGGGAAAGTATTCGTGGAATTACTGAGTTATTTTGTTTGTGTGCTTCTGAGCTACTGGGGGGAAGTATGTTTGATGTCCGTATGCGATATTTTGCTTAATCTAGTAGTAAGATTACTATTGTGGTTTGGTATCAGCGGAGATAATTCGGACGGTTTTGTAAGTTGGGTAGAGTTGTTAGCTCCAATGGTGGCACCATTTATCTTTGTATTGATAGGGAGGTTTGGGTTTCATTACACAGCAAATCTGAGCTTACAGAACTCTCTGTATCTATCAGTTGTGACCATAACAGGTGTTGGATTTGGTGATGTTGATATTCTTACTAGTGCAGGAGTGGTTTTCGGTAGCTTATGGATGTGCATATCCACCCTAATATATGGCACGTGTTGTACCTGTCTAGCCGATAGAATTGCAGCAAGGTTGGGTGTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

197

Amino Acids

21.66

Weight (kDa)

5.22

Isoelectric Point (pI)

23.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 27 - 69 1.6e-08 Ion channel
Ion_trans_2 PF07885 120 - 189 1.1e-07 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021156)

Species Orthologous Gene IDs
malus_domestica MD09G1058100.v1.1 MD09G1058400.v1.1 MD09G1058700.v1.1
prunus_persica Prupe.1G192600_v2.0.a1
pyrus_communis pycom111g04840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 349
AciI CCGC 2 cut(s) 107, 294
AcvI CACGTG 1 cut(s) 540
AfaI GTAC 1 cut(s) 547
AfiI CCNNNNNNNGG 1 cut(s) 159
AflIII ACRYGT 1 cut(s) 539
AhlI ACTAGT 1 cut(s) 479
AluBI AGCT 4 cut(s) 210, 338, 408, 504
AluI AGCT 4 cut(s) 210, 338, 408, 504
ApeKI GCWGC 1 cut(s) 569
Asp700I GAANNNNTTC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 473
BanI GGYRCC 1 cut(s) 349
BbrPI CACGTG 1 cut(s) 540
BbvI GCAGC 1 cut(s) 581
BceAI ACGGC 1 cut(s) 120
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BcuI ACTAGT 1 cut(s) 479
BfaI CTAG 3 cut(s) 260, 480, 554
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 1 cut(s) 570
BlsI GCNGC 1 cut(s) 571
BmiI GGNNCC 1 cut(s) 351
BmrI ACTGGG 1 cut(s) 223
BmuI ACTGGG 1 cut(s) 223
BsaAI YACGTR 1 cut(s) 540
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 516
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMII CTCAG 3 cut(s) 173, 197, 395
BseNI ACTGG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 581
BsgI GTGCAG 1 cut(s) 504
BshNI GGYRCC 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 159
BspACI CCGC 2 cut(s) 107, 294
BspCNI CTCAG 3 cut(s) 174, 198, 396
BspLI GGNNCC 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 349
BsrI ACTGG 1 cut(s) 218
Bst4CI ACNGT 3 cut(s) 56, 124, 311
BstBAI YACGTR 1 cut(s) 540
BstDEI CTNAG 3 cut(s) 182, 206, 404
BstF5I GGATG 1 cut(s) 516
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 581
BtsCI GGATG 1 cut(s) 516
Csp6I GTAC 1 cut(s) 546
CviJI RGCY 5 cut(s) 210, 338, 408, 504, 557
CviKI_1 RGCY 5 cut(s) 210, 338, 408, 504, 557
CviQI GTAC 1 cut(s) 546
DdeI CTNAG 3 cut(s) 182, 206, 404
EciI GGCGGA 1 cut(s) 122
Eco72I CACGTG 1 cut(s) 540
Fnu4HI GCNGC 1 cut(s) 570
FokI GGATG 1 cut(s) 523
Fsp4HI GCNGC 1 cut(s) 570
FspBI CTAG 3 cut(s) 260, 480, 554
GluI GCNGC 1 cut(s) 570
HphI GGTGA 1 cut(s) 473
Hpy188I TCNGA 3 cut(s) 207, 307, 405
HpyCH4III ACNGT 3 cut(s) 56, 124, 311
HpyCH4IV ACGT 1 cut(s) 539
HpyCH4V TGCA 3 cut(s) 485, 516, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 3 cut(s) 182, 206, 404
HpySE526I ACGT 1 cut(s) 539
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 5 cut(s) 16, 199, 432, 471, 562
Lsp1109I GCAGC 1 cut(s) 581
MaeI CTAG 3 cut(s) 260, 480, 554
MaeII ACGT 1 cut(s) 539
MaeIII GTNAC 3 cut(s) 56, 72, 436
MfeI CAATTG 1 cut(s) 586
MluCI AATT 4 cut(s) 176, 301, 564, 586
MmeI TCCRAC 1 cut(s) 433
MnlI CCTC 2 cut(s) 71, 369
MroXI GAANNNNTTC 1 cut(s) 167
MseI TTAA 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 294
MunI CAATTG 1 cut(s) 586
MwoI GCNNNNNNNGC 1 cut(s) 104
NlaIV GGNNCC 1 cut(s) 351
NmuCI GTSAC 1 cut(s) 436
PdmI GAANNNNTTC 1 cut(s) 167
PkrI GCNGC 1 cut(s) 571
PmaCI CACGTG 1 cut(s) 540
PmlI CACGTG 1 cut(s) 540
Ppu21I YACGTR 1 cut(s) 540
PspCI CACGTG 1 cut(s) 540
PspN4I GGNNCC 1 cut(s) 351
RsaI GTAC 1 cut(s) 547
RsaNI GTAC 1 cut(s) 546
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 1 cut(s) 570
SfcI CTRYAG 1 cut(s) 9
SpeI ACTAGT 1 cut(s) 479
Sse9I AATT 4 cut(s) 176, 301, 564, 586
SsiI CCGC 2 cut(s) 107, 294
SspMI CTAG 3 cut(s) 260, 480, 554
TaaI ACNGT 3 cut(s) 56, 124, 311
TaiI ACGT 1 cut(s) 542
TasI AATT 4 cut(s) 176, 301, 564, 586
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 1 cut(s) 569
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 1 cut(s) 377
TspGWI ACGGA 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 153
XmnI GAANNNNTTC 1 cut(s) 167
XspI CTAG 3 cut(s) 260, 480, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.