Prupe.1G192600_v2.0.a1

potassium channel activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0021156
Physical Location & Seq
Reverse (-)
18018195 .. 18024853
6659 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G192600.1

Sequence Viewer

Length: 879 bp
ATGGAAGTGGAAGTGGAGTCAACCTTGTCGAGCCCCTCAACACTTGGAAGCGGAGTTGGAGGTGACCTCTTGCCCTACTTACCACCTTCCCCTGATCACATACGAACTGTACTTGGGCACTTACAAGTTGCACTTGAGAACATACAAGCTGCACATGAACACATGCGAGATGCAGCTCTTCTTCACCAAGATGCAGCACAAGATGCAACTCTTCTTCCACAAGATATTCTAGGGCCTGCACCTTCAATTCGTCTTCAATTGCTGGTTAGGATCAGCATGTGGCCCGTGATGCTTGTTTTGATTTTTGGTTTATTATGGTGTTTCCCGCATAGCTTCAAAGACAAAAATTCAACAAGAAATTTATCACCATTTGCCCTTTCACTTTCCTTGACAGCACAAACGACGTCAACTGTGGGATACGGCGACATTGTACCCAATACTGTTTGGGGTAAAATTCTAACTTCGTTGTTGAGTTTTTTTCTTAGTGGAGTGTTGGGCTACGTGGGGGATTTATTTTTGATGACTTTATGTGATTGTTTTATCCAATTATTGGAACTTATGCTAGTTGATTGGTACATTAGTGAGCATAGGTTTAACAGTTTTGTTGGCCGGTTAGAATTGCTTGTGCCAATATTGACACCTATTTTATGTGTAGTTGTAGGTATGTTGGAGTTTCACAGACTAACAAAATTTAACTATTTGGATTGTTTGTATCTGTCTGTGGTTACTATAACAACACTTGGGTATGGGGATATTGTCATTATGTCGGAGGATGCGGTAATTTTTGCTAGTTTTTGGCTATGGTTGTCGACGATCATATACGCCAAGTGTACCTACTACTTAAGTTGTAGAATTGCAAGACGATTGGGAATAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

293

Amino Acids

32.54

Weight (kDa)

5.39

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021156)

Species Orthologous Gene IDs
malus_domestica MD09G1058100.v1.1 MD09G1058400.v1.1 MD09G1058700.v1.1
prunus_persica Prupe.1G192600_v2.0.a1
pyrus_communis pycom111g04840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 407
AccB7I CCANNNNNTGG 1 cut(s) 550
AccI GTMKAC 1 cut(s) 809
AciI CCGC 3 cut(s) 51, 326, 776
AclWI GGATC 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 607
AcsI RAATTY 4 cut(s) 346, 358, 453, 689
AcyI GRCGYC 1 cut(s) 404
AfaI GTAC 4 cut(s) 111, 432, 575, 832
AfiI CCNNNNNNNGG 1 cut(s) 550
AflII CTTAAG 1 cut(s) 841
AgsI TTSAA 4 cut(s) 246, 257, 337, 351
AluBI AGCT 3 cut(s) 149, 176, 333
AluI AGCT 3 cut(s) 149, 176, 333
AlwI GGATC 1 cut(s) 278
AoxI GGCC 3 cut(s) 233, 281, 607
ApeKI GCWGC 3 cut(s) 149, 173, 194
ApoI RAATTY 4 cut(s) 346, 358, 453, 689
AspS9I GGNCC 2 cut(s) 233, 282
AsuHPI GGTGA 3 cut(s) 74, 176, 357
BaeGI GKGCMC 1 cut(s) 120
BaeI ACNNNNGTAYC 2 cut(s) 565, 598
BanII GRGCYC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 245
BbvI GCAGC 3 cut(s) 136, 185, 206
BceAI ACGGC 1 cut(s) 436
BciVI GTATCC 1 cut(s) 410
BclI TGATCA 1 cut(s) 94
BfaI CTAG 3 cut(s) 230, 563, 789
BfrI CTTAAG 1 cut(s) 841
BfuI GTATCC 1 cut(s) 410
BisI GCNGC 3 cut(s) 150, 174, 195
BlsI GCNGC 3 cut(s) 151, 175, 196
BmgT120I GGNCC 2 cut(s) 233, 282
BmsI GCATC 5 cut(s) 160, 181, 193, 279, 763
BpiI GAAGAC 1 cut(s) 245
BplI GAGNNNNNCTC 2 cut(s) 51, 83
BpuEI CTTGAG 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 502
BsaHI GRCGYC 1 cut(s) 404
Bsc4I CCNNNNNNNGG 1 cut(s) 550
Bse118I RCCGGY 1 cut(s) 609
BseGI GGATG 1 cut(s) 778
BseLI CCNNNNNNNGG 1 cut(s) 550
BseSI GKGCMC 1 cut(s) 120
BseXI GCAGC 3 cut(s) 136, 185, 206
BsgI GTGCAG 2 cut(s) 135, 222
BshFI GGCC 3 cut(s) 235, 283, 609
BsiSI CCGG 1 cut(s) 610
BslI CCNNNNNNNGG 1 cut(s) 550
BsnI GGCC 3 cut(s) 235, 283, 609
Bsp1286I GDGCHC 2 cut(s) 35, 120
Bsp143I GATC 3 cut(s) 94, 270, 813
BspACI CCGC 3 cut(s) 51, 326, 776
BspANI GGCC 3 cut(s) 235, 283, 609
BspPI GGATC 1 cut(s) 278
BspQI GCTCTTC 1 cut(s) 183
BspTI CTTAAG 1 cut(s) 841
BsrFI RCCGGY 1 cut(s) 609
BssAI RCCGGY 1 cut(s) 609
BssMI GATC 3 cut(s) 94, 270, 813
BssNI GRCGYC 1 cut(s) 404
Bst4CI ACNGT 4 cut(s) 109, 412, 442, 599
Bst6I CTCTTC 2 cut(s) 183, 216
BstACI GRCGYC 1 cut(s) 404
BstAFI CTTAAG 1 cut(s) 841
BstAPI GCANNNNNTGC 1 cut(s) 203
BstBAI YACGTR 1 cut(s) 502
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 482
BstEII GGTNACC 1 cut(s) 62
BstF5I GGATG 1 cut(s) 778
BstKTI GATC 3 cut(s) 97, 273, 816
BstMBI GATC 3 cut(s) 94, 270, 813
BstMWI GCNNNNNNNGC 2 cut(s) 203, 289
BstNSI RCATGY 2 cut(s) 166, 280
BstPI GGTNACC 1 cut(s) 62
BstSLI GKGCMC 1 cut(s) 120
BstV1I GCAGC 3 cut(s) 136, 185, 206
BstV2I GAAGAC 1 cut(s) 245
BsuI GTATCC 1 cut(s) 410
BsuRI GGCC 3 cut(s) 235, 283, 609
BtsCI GGATG 1 cut(s) 778
Cac8I GCNNGC 1 cut(s) 237
Cfr10I RCCGGY 1 cut(s) 609
Cfr13I GGNCC 2 cut(s) 233, 282
Csp6I GTAC 4 cut(s) 110, 431, 574, 831
CviAII CATG 3 cut(s) 155, 163, 277
CviJI RGCY 9 cut(s) 33, 149, 176, 235, 283, 333, 498, 609, 799
CviKI_1 RGCY 9 cut(s) 33, 149, 176, 235, 283, 333, 498, 609, 799
CviQI GTAC 4 cut(s) 110, 431, 574, 831
DdeI CTNAG 1 cut(s) 482
DpnI GATC 3 cut(s) 96, 272, 815
DpnII GATC 3 cut(s) 94, 270, 813
EaeI YGGCCR 1 cut(s) 607
Eam1104I CTCTTC 2 cut(s) 183, 216
EarI CTCTTC 2 cut(s) 183, 216
Eco24I GRGCYC 1 cut(s) 35
Eco91I GGTNACC 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 62
EcoT38I GRGCYC 1 cut(s) 35
FaeI CATG 3 cut(s) 158, 166, 280
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FatI CATG 3 cut(s) 154, 162, 276
FauI CCCGC 1 cut(s) 333
FbaI TGATCA 1 cut(s) 94
FblI GTMKAC 1 cut(s) 809
Fnu4HI GCNGC 3 cut(s) 150, 174, 195
FokI GGATG 1 cut(s) 785
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 3 cut(s) 150, 174, 195
FspBI CTAG 3 cut(s) 230, 563, 789
GluI GCNGC 3 cut(s) 150, 174, 195
HaeIII GGCC 3 cut(s) 235, 283, 609
HapII CCGG 1 cut(s) 610
Hin1I GRCGYC 1 cut(s) 404
Hin1II CATG 3 cut(s) 158, 166, 280
HincII GTYRAC 3 cut(s) 21, 408, 810
HindII GTYRAC 3 cut(s) 21, 408, 810
HinfI GANTC 1 cut(s) 17
HpaII CCGG 1 cut(s) 610
HphI GGTGA 3 cut(s) 74, 176, 357
Hpy166II GTNNAC 4 cut(s) 21, 408, 810, 831
Hpy188I TCNGA 1 cut(s) 769
Hpy8I GTNNAC 4 cut(s) 21, 408, 810, 831
Hpy99I CGWCG 2 cut(s) 406, 814
HpyAV CCTTC 2 cut(s) 96, 252
HpyCH4III ACNGT 4 cut(s) 109, 412, 442, 599
HpyCH4IV ACGT 2 cut(s) 404, 501
HpyCH4V TGCA 7 cut(s) 131, 152, 173, 194, 206, 239, 857
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 289
HpyF3I CTNAG 1 cut(s) 482
HpySE526I ACGT 2 cut(s) 404, 501
Hsp92I GRCGYC 1 cut(s) 404
Hsp92II CATG 3 cut(s) 158, 166, 280
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 3 cut(s) 94, 270, 813
LguI GCTCTTC 1 cut(s) 183
LpnPI CCDG 4 cut(s) 105, 248, 249, 623
Lsp1109I GCAGC 3 cut(s) 136, 185, 206
LweI GCATC 5 cut(s) 160, 181, 193, 279, 763
MaeI CTAG 3 cut(s) 230, 563, 789
MaeII ACGT 2 cut(s) 404, 501
MaeIII GTNAC 2 cut(s) 62, 724
MalI GATC 3 cut(s) 96, 272, 815
MboI GATC 3 cut(s) 94, 270, 813
MboII GAAGA 5 cut(s) 170, 173, 203, 206, 245
MfeI CAATTG 1 cut(s) 257
MhlI GDGCHC 2 cut(s) 35, 120
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 3 cut(s) 37, 648, 747
MnlI CCTC 4 cut(s) 46, 53, 77, 763
MseI TTAA 3 cut(s) 594, 693, 842
MslI CAYNNNNRTG 1 cut(s) 189
MspCI CTTAAG 1 cut(s) 841
MspI CCGG 1 cut(s) 610
MunI CAATTG 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 203, 289
NdeII GATC 3 cut(s) 94, 270, 813
NlaIII CATG 3 cut(s) 158, 166, 280
NmuCI GTSAC 1 cut(s) 62
NspI RCATGY 2 cut(s) 166, 280
PciSI GCTCTTC 1 cut(s) 183
PflMI CCANNNNNTGG 1 cut(s) 550
PkrI GCNGC 3 cut(s) 151, 175, 196
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
Ppu21I YACGTR 1 cut(s) 502
PspEI GGTNACC 1 cut(s) 62
PspPI GGNCC 2 cut(s) 233, 282
RsaI GTAC 4 cut(s) 111, 432, 575, 832
RsaNI GTAC 4 cut(s) 110, 431, 574, 831
RseI CAYNNNNRTG 1 cut(s) 189
SalI GTCGAC 1 cut(s) 808
SapI GCTCTTC 1 cut(s) 183
SaqAI TTAA 3 cut(s) 594, 693, 842
SatI GCNGC 3 cut(s) 150, 174, 195
Sau3AI GATC 3 cut(s) 94, 270, 813
Sau96I GGNCC 2 cut(s) 233, 282
SchI GAGTC 1 cut(s) 26
SduI GDGCHC 2 cut(s) 35, 120
SfaNI GCATC 5 cut(s) 160, 181, 193, 279, 763
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 134, 841
SmoI CTYRAG 2 cut(s) 134, 841
SsiI CCGC 3 cut(s) 51, 326, 776
SspI AATATT 1 cut(s) 633
SspMI CTAG 3 cut(s) 230, 563, 789
TaaI ACNGT 4 cut(s) 109, 412, 442, 599
TaiI ACGT 2 cut(s) 407, 504
TaqI TCGA 2 cut(s) 29, 809
TatI WGTACW 1 cut(s) 109
Tru1I TTAA 3 cut(s) 594, 693, 842
Tru9I TTAA 3 cut(s) 594, 693, 842
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 3 cut(s) 149, 173, 194
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 171
Van91I CCANNNNNTGG 1 cut(s) 550
Vha464I CTTAAG 1 cut(s) 841
XapI RAATTY 4 cut(s) 346, 358, 453, 689
XceI RCATGY 2 cut(s) 166, 280
XmiI GTMKAC 1 cut(s) 809
XspI CTAG 3 cut(s) 230, 563, 789
ZraI GACGTC 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.