Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0021155

Physical Location & Seq

Genomic Coordinates Forward (+)

8191941 .. 8194155

Gene Structure 2215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1110300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGTTGGCCCGTTCGATATATCAAACCCGATTTCTGGTAGCAGAGTTCTTGTTGACGAGGGCTTGAATGTGGCTTCATTTCAAGGCTTGGATGGTGTAATTGGCAGCTTACTGATGAAATGGAACCGGCAAATAGCAATCATGGGCTGCCAAGAAATACTGCACCAATATTATTGGAAATGCCTTCGAGTTCAAGCCATGGAGGTGGCCGCAGTTACTTTGCATTTTCCTCAAGAATTTCTGTCGACTGCAGAATTCAAGCCATGCAATATTATTGTGCCACTACTCCTGTTCTGTCATGATGAAAGAGAAGGGACGTGGTGGCCGGAGGAGGTAAATAAGGCCACAGAGTGTGGGCTAAAGATAGGAGACGTCGAAGTCAAACAAAAGTCAAAGCTCCCCCAATTCAATGAGAGTTTTCTCAAGCTAGAGAGCCTATCTGCACCTTGGCTTGTTTTTCCCTTCACTCTTTGGTACCACATTTGCCAGGCTTTGGAAGAATCACGTGTTGAATTGGATGAAGGGCAGATGGTAAGCACTCATGATCGGGCAAGTTCAAGCCAGATGGTTACACCCCTTCCTCCAAAAAGGTCCACGCTGATGACGATGATCTGTTCTTTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004604 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009973 GO:0009987 GO:0016491 GO:0016667 GO:0016671 GO:0019379 GO:0019419 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00920 ko01120 map00920 map01120

Pfam Domains

Protein Families

PAPS_reduct Thioredoxin

Protein Analysis

209

Amino Acids

23.6

Weight (kDa)

5.24

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021155)

Species	Orthologous Gene IDs
malus_domestica	MD09G1110300.v1.1 MD17G1098000.v1.1
prunus_persica	Prupe.3G216200_v2.0.a1
pyrus_communis	pycom09g03270 pycom17g09360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
AatII	GACGTC	1 cut(s)	375
Acc65I	GGTACC	1 cut(s)	474
AccB1I	GGYRCC	1 cut(s)	474
AccB7I	CCANNNNNTGG	1 cut(s)	493
AccI	GTMKAC	1 cut(s)	245
AciI	CCGC	1 cut(s)	210
AcoI	YGGCCR	2 cut(s)	207, 323
AcsI	RAATTY	2 cut(s)	236, 254
AcvI	CACGTG	1 cut(s)	506
AcyI	GRCGYC	1 cut(s)	372
AdeI	CACNNNGTG	1 cut(s)	351
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	2 cut(s)	35, 493
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	7 cut(s)	67, 83, 194, 259, 409, 512, 558
AjiI	CACGTC	1 cut(s)	318
AjnI	CCWGG	1 cut(s)	486
AluBI	AGCT	3 cut(s)	108, 397, 427
AluI	AGCT	3 cut(s)	108, 397, 427
Alw26I	GTCTC	1 cut(s)	363
AoxI	GGCC	4 cut(s)	7, 207, 323, 342
ApeKI	GCWGC	2 cut(s)	105, 147
ApoI	RAATTY	2 cut(s)	236, 254
Asp718I	GGTACC	1 cut(s)	474
AspS9I	GGNCC	2 cut(s)	8, 591
AvaII	GGWCC	1 cut(s)	591
BanI	GGYRCC	1 cut(s)	474
BbrPI	CACGTG	1 cut(s)	506
BbvI	GCAGC	2 cut(s)	117, 134
BccI	CCATC	3 cut(s)	86, 523, 559
BciT130I	CCWGG	1 cut(s)	488
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	1 cut(s)	428
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	3 cut(s)	106, 148, 210
BlsI	GCNGC	3 cut(s)	107, 149, 211
Bme1390I	CCNGG	1 cut(s)	488
Bme18I	GGWCC	1 cut(s)	591
BmgBI	CACGTC	1 cut(s)	318
BmgT120I	GGNCC	2 cut(s)	8, 591
BmiI	GGNNCC	2 cut(s)	125, 476
BmrFI	CCNGG	1 cut(s)	488
BpuEI	CTTGAG	2 cut(s)	216, 407
BsaAI	YACGTR	1 cut(s)	506
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	2 cut(s)	198, 446
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 493
Bse118I	RCCGGY	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	488
BseDI	CCNNGG	2 cut(s)	198, 446
BseGI	GGATG	2 cut(s)	97, 523
BseLI	CCNNNNNNNGG	2 cut(s)	35, 493
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	2 cut(s)	117, 134
BsgI	GTGCAG	2 cut(s)	146, 426
BshFI	GGCC	4 cut(s)	9, 209, 325, 344
BshNI	GGYRCC	1 cut(s)	474
BsiSI	CCGG	2 cut(s)	127, 326
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	2 cut(s)	35, 493
BsmAI	GTCTC	1 cut(s)	363
BsmBI	CGTCTC	1 cut(s)	363
BsmFI	GGGAC	1 cut(s)	328
BsnI	GGCC	4 cut(s)	9, 209, 325, 344
Bsp143I	GATC	2 cut(s)	544, 609
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	4 cut(s)	9, 209, 325, 344
BspHI	TCATGA	2 cut(s)	298, 541
BspLI	GGNNCC	2 cut(s)	125, 476
BspMAI	CTGCAG	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	474
BsrFI	RCCGGY	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	198, 446
BssMI	GATC	2 cut(s)	544, 609
BssNI	GRCGYC	1 cut(s)	372
BssT1I	CCWWGG	2 cut(s)	198, 446
Bst2UI	CCWGG	1 cut(s)	488
BstACI	GRCGYC	1 cut(s)	372
BstBAI	YACGTR	1 cut(s)	506
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	97, 523
BstKTI	GATC	2 cut(s)	547, 612
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	2 cut(s)	544, 609
BstNI	CCWGG	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	486
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	117, 134
BstXI	CCANNNNNNTGG	1 cut(s)	205
BsuRI	GGCC	4 cut(s)	9, 209, 325, 344
BtgI	CCRYGG	1 cut(s)	198
BtrI	CACGTC	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	97, 523
CciI	TCATGA	2 cut(s)	298, 541
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	8, 591
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	5 cut(s)	142, 199, 264, 299, 542
CviQI	GTAC	1 cut(s)	475
DpnI	GATC	2 cut(s)	546, 611
DpnII	GATC	2 cut(s)	544, 609
DraIII	CACNNNGTG	1 cut(s)	351
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
EaeI	YGGCCR	2 cut(s)	207, 323
Eco130I	CCWWGG	2 cut(s)	198, 446
Eco47I	GGWCC	1 cut(s)	591
Eco72I	CACGTG	1 cut(s)	506
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	486
EcoT14I	CCWWGG	2 cut(s)	198, 446
ErhI	CCWWGG	2 cut(s)	198, 446
Esp3I	CGTCTC	1 cut(s)	363
FaeI	CATG	5 cut(s)	145, 202, 267, 302, 545
FaiI	YATR	6 cut(s)	20, 143, 200, 265, 300, 543
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	5 cut(s)	141, 198, 263, 298, 541
FblI	GTMKAC	1 cut(s)	245
Fnu4HI	GCNGC	3 cut(s)	106, 148, 210
FokI	GGATG	2 cut(s)	104, 530
Fsp4HI	GCNGC	3 cut(s)	106, 148, 210
FspBI	CTAG	1 cut(s)	428
GluI	GCNGC	3 cut(s)	106, 148, 210
HaeIII	GGCC	4 cut(s)	9, 209, 325, 344
HapII	CCGG	2 cut(s)	127, 326
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	5 cut(s)	145, 202, 267, 302, 545
HincII	GTYRAC	2 cut(s)	55, 246
HindII	GTYRAC	2 cut(s)	55, 246
HinfI	GANTC	1 cut(s)	500
HpaII	CCGG	2 cut(s)	127, 326
Hpy166II	GTNNAC	3 cut(s)	55, 246, 594
Hpy188III	TCNNGA	3 cut(s)	233, 299, 542
Hpy8I	GTNNAC	3 cut(s)	55, 246, 594
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	5 cut(s)	194, 305, 472, 515, 587
HpyCH4IV	ACGT	3 cut(s)	317, 372, 505
HpyCH4V	TGCA	5 cut(s)	163, 223, 251, 267, 443
HpySE526I	ACGT	3 cut(s)	317, 372, 505
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	5 cut(s)	145, 202, 267, 302, 545
KpnI	GGTACC	1 cut(s)	478
Kzo9I	GATC	2 cut(s)	544, 609
LmnI	GCTCC	1 cut(s)	402
LpnPI	CCDG	7 cut(s)	21, 140, 302, 339, 473, 500, 575
Lsp1109I	GCAGC	2 cut(s)	117, 134
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	3 cut(s)	317, 372, 505
MaeIII	GTNAC	2 cut(s)	214, 568
MalI	GATC	2 cut(s)	546, 611
MboI	GATC	2 cut(s)	544, 609
MboII	GAAGA	1 cut(s)	509
MluCI	AATT	5 cut(s)	99, 236, 254, 404, 512
MnlI	CCTC	6 cut(s)	52, 196, 240, 322, 325, 591
MslI	CAYNNNNRTG	2 cut(s)	203, 599
MspI	CCGG	2 cut(s)	127, 326
MspR9I	CCNGG	1 cut(s)	488
MvaI	CCWGG	1 cut(s)	488
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	2 cut(s)	544, 609
NlaIII	CATG	5 cut(s)	145, 202, 267, 302, 545
NlaIV	GGNNCC	2 cut(s)	125, 476
PagI	TCATGA	2 cut(s)	298, 541
PcsI	WCGNNNNNNNCGW	1 cut(s)	602
PfeI	GAWTC	1 cut(s)	500
PflMI	CCANNNNNTGG	1 cut(s)	493
PkrI	GCNGC	3 cut(s)	107, 149, 211
PmaCI	CACGTG	1 cut(s)	506
PmlI	CACGTG	1 cut(s)	506
Ppu21I	YACGTR	1 cut(s)	506
Psp6I	CCWGG	1 cut(s)	486
PspCI	CACGTG	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	486
PspN4I	GGNNCC	2 cut(s)	125, 476
PspPI	GGNCC	2 cut(s)	8, 591
PstI	CTGCAG	1 cut(s)	253
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	2 cut(s)	203, 599
SalI	GTCGAC	1 cut(s)	244
SatI	GCNGC	3 cut(s)	106, 148, 210
Sau3AI	GATC	2 cut(s)	544, 609
Sau96I	GGNCC	2 cut(s)	8, 591
ScrFI	CCNGG	1 cut(s)	488
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	591
SmiMI	CAYNNNNRTG	2 cut(s)	203, 599
SmlI	CTYRAG	2 cut(s)	231, 422
SmoI	CTYRAG	2 cut(s)	231, 422
Sse9I	AATT	5 cut(s)	99, 236, 254, 404, 512
SsiI	CCGC	1 cut(s)	210
SspI	AATATT	2 cut(s)	170, 271
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	1 cut(s)	486
StyI	CCWWGG	2 cut(s)	198, 446
TaiI	ACGT	3 cut(s)	320, 375, 508
TaqI	TCGA	4 cut(s)	15, 187, 245, 375
TasI	AATT	5 cut(s)	99, 236, 254, 404, 512
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	500
TseI	GCWGC	2 cut(s)	105, 147
TspDTI	ATGAA	4 cut(s)	66, 131, 318, 534
Van91I	CCANNNNNTGG	1 cut(s)	493
VpaK11BI	GGWCC	1 cut(s)	591
XapI	RAATTY	2 cut(s)	236, 254
XmiI	GTMKAC	1 cut(s)	245
XspI	CTAG	1 cut(s)	428
ZraI	GACGTC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.