Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0021155

Physical Location & Seq

Genomic Coordinates Forward (+)

7131137 .. 7131648

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g09360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTTGCCCCGTTCGATATCTTAAACCCGATTTCTGGTAGCAGTGTTCTTGTTGATGAGGACTTGAATGTGGCTTCATTTCAAGGCTTGGATGTAATTGGCAGCTTACTGTTGAAATGGAACCAGCAAATAACAATCCTGGGCATTCAAGCCATGGATATGGTTGCAGTTACTTTGCATTTTCCTCAAGAATTTCTGTCGACTGTAATGTTCAAGTCAGGCAATATTATTATGCCACTATTATTGTTCTGTCAGGATGAAAGGGAAGGGAGAAGGTGGCCGGAGGAAGTAAATATGGGCAAGGAGTGTGGACTAAAAATAGGAGACGTCGAAGTTAAACAAGAGTCAAAGCTCCCCCATTTCAATGAGAATTTTCCCAAGTTAGAGTACCCATCTGCACCATGGTTGGGTTTGCTCTTCACTTATTGGTGCCACATTTGCCAGGTAATAAGATATTACAACATAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004604 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009973 GO:0009987 GO:0016491 GO:0016667 GO:0016671 GO:0019379 GO:0019419 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00920 ko01120 map00920 map01120

Pfam Domains

Protein Families

PAPS_reduct Thioredoxin

Protein Analysis

157

Amino Acids

17.82

Weight (kDa)

4.84

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021155)

Species	Orthologous Gene IDs
malus_domestica	MD09G1110300.v1.1 MD17G1098000.v1.1
prunus_persica	Prupe.3G216200_v2.0.a1
pyrus_communis	pycom09g03270 pycom17g09360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	330
AccB1I	GGYRCC	1 cut(s)	429
AccI	GTMKAC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	278
AcsI	RAATTY	2 cut(s)	191, 370
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	35, 407
AgsI	TTSAA	6 cut(s)	67, 83, 115, 149, 214, 364
AjnI	CCWGG	2 cut(s)	138, 441
AluBI	AGCT	2 cut(s)	105, 352
AluI	AGCT	2 cut(s)	105, 352
Alw26I	GTCTC	1 cut(s)	318
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	1 cut(s)	102
ApoI	RAATTY	2 cut(s)	191, 370
BanI	GGYRCC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	1 cut(s)	400
BciT130I	CCWGG	2 cut(s)	140, 443
BcoDI	GTCTC	1 cut(s)	318
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	140, 443
BmiI	GGNNCC	2 cut(s)	122, 431
BmrFI	CCNGG	2 cut(s)	140, 443
BpuEI	CTTGAG	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	3 cut(s)	139, 153, 401
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 407
BseBI	CCWGG	2 cut(s)	140, 443
BseDI	CCNNGG	3 cut(s)	139, 153, 401
BseGI	GGATG	2 cut(s)	97, 262
BseLI	CCNNNNNNNGG	2 cut(s)	35, 407
BseXI	GCAGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	280
BshNI	GGYRCC	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	35, 407
BsmAI	GTCTC	1 cut(s)	318
BsmBI	CGTCTC	1 cut(s)	318
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	280
Bsp19I	CCATGG	2 cut(s)	153, 401
BspANI	GGCC	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	122, 431
BspQI	GCTCTTC	1 cut(s)	422
BspT107I	GGYRCC	1 cut(s)	429
BssECI	CCNNGG	3 cut(s)	139, 153, 401
BssNI	GRCGYC	1 cut(s)	327
BssT1I	CCWWGG	2 cut(s)	153, 401
Bst2UI	CCWGG	2 cut(s)	140, 443
Bst4CI	ACNGT	2 cut(s)	111, 205
Bst6I	CTCTTC	1 cut(s)	422
BstACI	GRCGYC	1 cut(s)	327
BstDSI	CCRYGG	2 cut(s)	153, 401
BstF5I	GGATG	2 cut(s)	97, 262
BstMAI	GTCTC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	1 cut(s)	438
BstNI	CCWGG	2 cut(s)	140, 443
BstSCI	CCNGG	2 cut(s)	138, 441
BstV1I	GCAGC	1 cut(s)	114
BstXI	CCANNNNNNTGG	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	280
BtgI	CCRYGG	2 cut(s)	153, 401
BtsCI	GGATG	2 cut(s)	97, 262
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	388
CspCI	CAANNNNNGTGG	4 cut(s)	225, 260, 289, 324
CviAII	CATG	2 cut(s)	154, 402
CviJI	RGCY	6 cut(s)	74, 87, 105, 152, 280, 352
CviKI_1	RGCY	6 cut(s)	74, 87, 105, 152, 280, 352
CviQI	GTAC	1 cut(s)	388
EaeI	YGGCCR	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Eco130I	CCWWGG	2 cut(s)	153, 401
Eco32I	GATATC	1 cut(s)	19
EcoRII	CCWGG	2 cut(s)	138, 441
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	2 cut(s)	153, 401
ErhI	CCWWGG	2 cut(s)	153, 401
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	2 cut(s)	157, 405
FaiI	YATR	6 cut(s)	155, 161, 233, 296, 403, 464
FatI	CATG	2 cut(s)	153, 401
FblI	GTMKAC	1 cut(s)	200
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	2 cut(s)	104, 269
Fsp4HI	GCNGC	1 cut(s)	103
GluI	GCNGC	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	1 cut(s)	281
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	2 cut(s)	157, 405
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HinfI	GANTC	1 cut(s)	344
HpaII	CCGG	1 cut(s)	281
Hpy166II	GTNNAC	2 cut(s)	201, 311
Hpy188III	TCNNGA	2 cut(s)	188, 254
Hpy8I	GTNNAC	2 cut(s)	201, 311
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	2 cut(s)	260, 267
HpyCH4III	ACNGT	2 cut(s)	111, 205
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	3 cut(s)	167, 178, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	438
HpySE526I	ACGT	1 cut(s)	327
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	2 cut(s)	157, 405
LguI	GCTCTTC	1 cut(s)	422
LmnI	GCTCC	1 cut(s)	357
LpnPI	CCDG	9 cut(s)	21, 125, 137, 152, 204, 239, 294, 428, 455
Lsp1109I	GCAGC	1 cut(s)	114
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	169
MboII	GAAGA	1 cut(s)	409
MluCI	AATT	3 cut(s)	96, 191, 370
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	3 cut(s)	52, 195, 277
MseI	TTAA	3 cut(s)	23, 336, 469
MslI	CAYNNNNRTG	2 cut(s)	158, 363
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	2 cut(s)	140, 443
Mva1269I	GAATGC	1 cut(s)	144
MvaI	CCWGG	2 cut(s)	140, 443
MwoI	GCNNNNNNNGC	1 cut(s)	438
NcoI	CCATGG	2 cut(s)	153, 401
NlaIII	CATG	2 cut(s)	157, 405
NlaIV	GGNNCC	2 cut(s)	122, 431
PciSI	GCTCTTC	1 cut(s)	422
PctI	GAATGC	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	104
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
Psp6I	CCWGG	2 cut(s)	138, 441
PspGI	CCWGG	2 cut(s)	138, 441
PspN4I	GGNNCC	2 cut(s)	122, 431
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	2 cut(s)	158, 363
SalI	GTCGAC	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	422
SaqAI	TTAA	3 cut(s)	23, 336, 469
SatI	GCNGC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	140, 443
SetI	ASST	5 cut(s)	107, 278, 330, 354, 447
SmiMI	CAYNNNNRTG	2 cut(s)	158, 363
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	3 cut(s)	96, 191, 370
SspI	AATATT	1 cut(s)	226
StyD4I	CCNGG	2 cut(s)	138, 441
StyI	CCWWGG	2 cut(s)	153, 401
TaaI	ACNGT	2 cut(s)	111, 205
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	3 cut(s)	15, 200, 330
TasI	AATT	3 cut(s)	96, 191, 370
Tru1I	TTAA	3 cut(s)	23, 336, 469
Tru9I	TTAA	3 cut(s)	23, 336, 469
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	1 cut(s)	102
TspDTI	ATGAA	2 cut(s)	66, 273
TspRI	CASTG	1 cut(s)	49
XapI	RAATTY	2 cut(s)	191, 370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	399
XmiI	GTMKAC	1 cut(s)	200
ZraI	GACGTC	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.