Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0021155

Physical Location & Seq

Genomic Coordinates Forward (+)

8341548 .. 8342658

Gene Structure 1111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1098000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCTTTCAAGTTCAAGCCACGGATGTGGCTGCAGTTTGCATTTTCCTCAAGAATTTCTGTCAATGTTCAAGTCAGGCAATATTATCATGCCACTACTATTGTTCTGTCAGGATGAAAGGGAAGGGAGGAGGTGGCCGGAGGAAGTAAATAAGGGCAAGGAGTGTAGGCTAAAAATAGGAGACGTCGAAGTTAAACAAGAGTCAAAGCTCCCCCATTTCAATGAGAATTTTCCCAAGTTAGAGTGCCCATCTGCACCATGGTTGGGTTTGCTCTTCACTTATTGGTGCCACATTTGCCAGGCTTCGGAAGAATCACATGTTGACTTGGATGAAGGGCAGATGGTAAGCACTCATGATCAGATTAAGTTGGCCAAGTTCAAGCCAGATGGTGACCTGACCATCACATGGAACATGCAAAGCAAGAATGGCAGTTTACATTGTCCTCTTTTTGTTGACCCCCCTATGACCATGACCGTCAATCATCATCACGGTCATGATCAATTCCACATGGATCTTCTAGTCTGGAACACTAGGATCTCTCTCTCTCTCTCTCTCTCTAGGGAGTTTCTATTTTGTTCTACTGACGAGTTCCCCTTAGCAACTTCAAGTATTTTCTGTTCATGTGTAATAGTGCACTTGATCACACAGTCTACCCCTGTTATTTTTCCTCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004604 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009973 GO:0009987 GO:0016491 GO:0016667 GO:0016671 GO:0019379 GO:0019419 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00920 ko01120 map00920 map01120

Pfam Domains

Protein Families

PAPS_reduct Thioredoxin

Protein Analysis

226

Amino Acids

25.69

Weight (kDa)

5.76

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021155)

Species	Orthologous Gene IDs
malus_domestica	MD09G1110300.v1.1 MD17G1098000.v1.1
prunus_persica	Prupe.3G216200_v2.0.a1
pyrus_communis	pycom09g03270 pycom17g09360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	285
AccB7I	CCANNNNNTGG	1 cut(s)	405
AccI	GTMKAC	1 cut(s)	650
AclWI	GGATC	2 cut(s)	519, 542
AcoI	YGGCCR	2 cut(s)	134, 369
AcsI	RAATTY	2 cut(s)	53, 226
AcyI	GRCGYC	1 cut(s)	183
AfiI	CCNNNNNNNGG	3 cut(s)	263, 304, 405
AflIII	ACRYGT	1 cut(s)	316
AgsI	TTSAA	6 cut(s)	9, 15, 70, 220, 379, 606
AjnI	CCWGG	1 cut(s)	297
AleI	CACNNNNGTG	1 cut(s)	24
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw21I	GWGCWC	1 cut(s)	636
Alw26I	GTCTC	1 cut(s)	174
Alw44I	GTGCAC	1 cut(s)	632
AlwI	GGATC	2 cut(s)	519, 542
AoxI	GGCC	2 cut(s)	134, 369
ApaLI	GTGCAC	1 cut(s)	632
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	2 cut(s)	53, 226
AsuHPI	GGTGA	1 cut(s)	401
BaeGI	GKGCMC	2 cut(s)	248, 636
BalI	TGGCCA	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	636
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	4 cut(s)	256, 334, 380, 407
BciT130I	CCWGG	1 cut(s)	299
BclI	TGATCA	3 cut(s)	355, 496, 639
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	3 cut(s)	518, 531, 558
BfmI	CTRYAG	1 cut(s)	31
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	287
BmrFI	CCNGG	1 cut(s)	299
Bpu10I	CCTNAGC	1 cut(s)	595
BpuEI	CTTGAG	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	19, 257
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 304, 405
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	19, 257
BseGI	GGATG	3 cut(s)	29, 118, 334
BseLI	CCNNNNNNNGG	3 cut(s)	263, 304, 405
BseRI	GAGGAG	1 cut(s)	142
BseSI	GKGCMC	2 cut(s)	248, 636
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	2 cut(s)	136, 371
BshNI	GGYRCC	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	636
BsiSI	CCGG	1 cut(s)	137
BslI	CCNNNNNNNGG	3 cut(s)	263, 304, 405
BsmAI	GTCTC	1 cut(s)	174
BsmBI	CGTCTC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	136, 371
Bsp1286I	GDGCHC	2 cut(s)	248, 636
Bsp143I	GATC	5 cut(s)	355, 496, 511, 534, 639
Bsp19I	CCATGG	1 cut(s)	257
BspANI	GGCC	2 cut(s)	136, 371
BspHI	TCATGA	2 cut(s)	352, 493
BspLI	GGNNCC	1 cut(s)	287
BspMAI	CTGCAG	1 cut(s)	35
BspPI	GGATC	2 cut(s)	519, 542
BspQI	GCTCTTC	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	285
BssECI	CCNNGG	2 cut(s)	19, 257
BssMI	GATC	5 cut(s)	355, 496, 511, 534, 639
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	3 cut(s)	475, 491, 648
Bst6I	CTCTTC	1 cut(s)	278
BstACI	GRCGYC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	595
BstDSI	CCRYGG	2 cut(s)	19, 257
BstEII	GGTNACC	1 cut(s)	389
BstF5I	GGATG	3 cut(s)	29, 118, 334
BstKTI	GATC	5 cut(s)	358, 499, 514, 537, 642
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	5 cut(s)	355, 496, 511, 534, 639
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 426
BstNI	CCWGG	1 cut(s)	299
BstNSI	RCATGY	2 cut(s)	320, 415
BstPI	GGTNACC	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	297
BstSFI	CTRYAG	1 cut(s)	31
BstSLI	GKGCMC	2 cut(s)	248, 636
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	2 cut(s)	511, 534
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	2 cut(s)	511, 534
BsuRI	GGCC	2 cut(s)	136, 371
BtgI	CCRYGG	2 cut(s)	19, 257
BtsCI	GGATG	3 cut(s)	29, 118, 334
CciI	TCATGA	2 cut(s)	352, 493
CspCI	CAANNNNNGTGG	2 cut(s)	81, 116
CviJI	RGCY	8 cut(s)	18, 30, 136, 169, 208, 302, 371, 382
CviKI_1	RGCY	8 cut(s)	18, 30, 136, 169, 208, 302, 371, 382
DdeI	CTNAG	1 cut(s)	595
DpnI	GATC	5 cut(s)	357, 498, 513, 536, 641
DpnII	GATC	5 cut(s)	355, 496, 511, 534, 639
EaeI	YGGCCR	2 cut(s)	134, 369
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	257
Eco91I	GGTNACC	1 cut(s)	389
EcoO65I	GGTNACC	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
Esp3I	CGTCTC	1 cut(s)	174
FbaI	TGATCA	3 cut(s)	355, 496, 639
FblI	GTMKAC	1 cut(s)	650
Fnu4HI	GCNGC	1 cut(s)	31
FokI	GGATG	3 cut(s)	36, 125, 341
Fsp4HI	GCNGC	1 cut(s)	31
FspBI	CTAG	3 cut(s)	518, 531, 558
GluI	GCNGC	1 cut(s)	31
HaeIII	GGCC	2 cut(s)	136, 371
HapII	CCGG	1 cut(s)	137
Hin1I	GRCGYC	1 cut(s)	183
HincII	GTYRAC	2 cut(s)	322, 454
HindII	GTYRAC	2 cut(s)	322, 454
HinfI	GANTC	2 cut(s)	200, 311
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	1 cut(s)	401
Hpy166II	GTNNAC	5 cut(s)	322, 434, 454, 634, 651
Hpy188I	TCNGA	2 cut(s)	307, 360
Hpy188III	TCNNGA	5 cut(s)	50, 110, 353, 494, 523
Hpy8I	GTNNAC	5 cut(s)	322, 434, 454, 634, 651
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	2 cut(s)	116, 326
HpyCH4III	ACNGT	3 cut(s)	475, 491, 648
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	5 cut(s)	33, 40, 254, 415, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 426
HpyF3I	CTNAG	1 cut(s)	595
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	183
Ksp22I	TGATCA	3 cut(s)	355, 496, 639
Kzo9I	GATC	5 cut(s)	355, 496, 511, 534, 639
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	9 cut(s)	60, 95, 150, 284, 311, 396, 407, 508, 669
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	3 cut(s)	518, 531, 558
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	5 cut(s)	357, 498, 513, 536, 641
MboI	GATC	5 cut(s)	355, 496, 511, 534, 639
MboII	GAAGA	3 cut(s)	265, 320, 506
MflI	RGATCY	2 cut(s)	511, 534
MhlI	GDGCHC	2 cut(s)	248, 636
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	3 cut(s)	53, 226, 500
MluNI	TGGCCA	1 cut(s)	371
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	6 cut(s)	57, 120, 123, 133, 453, 678
Mox20I	TGGCCA	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	2 cut(s)	192, 363
MslI	CAYNNNNRTG	3 cut(s)	24, 219, 492
Msp20I	TGGCCA	1 cut(s)	371
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	294, 426
NcoI	CCATGG	1 cut(s)	257
NdeII	GATC	5 cut(s)	355, 496, 511, 534, 639
NlaIV	GGNNCC	1 cut(s)	287
NmuCI	GTSAC	1 cut(s)	389
NspI	RCATGY	2 cut(s)	320, 415
OliI	CACNNNNGTG	1 cut(s)	24
PagI	TCATGA	2 cut(s)	352, 493
PciI	ACATGT	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	311
PflMI	CCANNNNNTGG	1 cut(s)	405
PkrI	GCNGC	1 cut(s)	32
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PscI	ACATGT	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	297
PspEI	GGTNACC	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	287
PsrI	GAACNNNNNNTAC	2 cut(s)	601, 633
PstI	CTGCAG	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	511, 534
RseI	CAYNNNNRTG	3 cut(s)	24, 219, 492
SapI	GCTCTTC	1 cut(s)	278
SaqAI	TTAA	2 cut(s)	192, 363
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	5 cut(s)	355, 496, 511, 534, 639
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	299
SduI	GDGCHC	2 cut(s)	248, 636
SetI	ASST	4 cut(s)	134, 186, 210, 396
SfcI	CTRYAG	1 cut(s)	31
SmiMI	CAYNNNNRTG	3 cut(s)	24, 219, 492
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
Sse9I	AATT	3 cut(s)	53, 226, 500
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	3 cut(s)	518, 531, 558
StyD4I	CCNGG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	3 cut(s)	475, 491, 648
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	186
TasI	AATT	3 cut(s)	53, 226, 500
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	2 cut(s)	192, 363
Tru9I	TTAA	2 cut(s)	192, 363
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	3 cut(s)	129, 345, 609
TspGWI	ACGGA	1 cut(s)	36
Van91I	CCANNNNNTGG	1 cut(s)	405
VneI	GTGCAC	1 cut(s)	632
XapI	RAATTY	2 cut(s)	53, 226
XceI	RCATGY	2 cut(s)	320, 415
XcmI	CCANNNNNNNNNTGG	1 cut(s)	255
XmiI	GTMKAC	1 cut(s)	650
XspI	CTAG	3 cut(s)	518, 531, 558
ZraI	GACGTC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.