Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0021155

Physical Location & Seq

Genomic Coordinates Reverse (-)

21859172 .. 21861175

Gene Structure 2004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G216200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGTTTCCCTGTCCAAGATCCTGTACCCTAATTCTGGTAGCCTTCTATTGGATGAGGACTTGAATGTGGCATCATTTCAAGGCTGGGATGGGGCAATTGGCAGCCTAGTGATCATGGCATGGAACCGAAAAGCAAACATAGGTAGCCAAGAAATGCACCAATATTTGAACTTCCTTCAAGTAGTTCAAGCCATGGATGTGCCTGCAGTTAGCTTGCATTATTGTTCTCGGGAACTTCTCTCGACTGCAACATTCAAGCCATGCAATATTATGCTCCTCTTGTTCTGTCAGCGTGAATGGGAAGGGCGGTGGCGGAGGAGGTGGTGGTGGAGGTGGTGGTTGGAGGAGGTAATTAAGGTCAAGGAGAGTGGGCTAAAAACAAGAGATGTCAAGTTGGAGAACCCATGTGCACCATGGCTTGTTGTGCTCTTTAATATTTGGTGCCACATTTTCCAGGCTTTGGCTGAAGGACAGAAGGCAGGCACTTCTGATGATGAACACCACACCTGCATACCCATCAAACACTCTTCCGAAAGGGCCCAGGCCGATAATGATCTGTACTTGATGGCTTCTGCTGATATCCTCTATGATGATGAAGATCATGATCCCATGGATCTTCTGGTGTGGAACACAAGGATCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004604 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009973 GO:0009987 GO:0016491 GO:0016667 GO:0016671 GO:0019379 GO:0019419 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00920 ko01120 map00920 map01120

Pfam Domains

Protein Families

PAPS_reduct Thioredoxin

Protein Analysis

215

Amino Acids

24.87

Weight (kDa)

5.33

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021155)

Species	Orthologous Gene IDs
malus_domestica	MD09G1110300.v1.1 MD17G1098000.v1.1
prunus_persica	Prupe.3G216200_v2.0.a1
pyrus_communis	pycom09g03270 pycom17g09360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	515
Acc36I	ACCTGC	1 cut(s)	515
AccB1I	GGYRCC	1 cut(s)	441
AccB7I	CCANNNNNTGG	1 cut(s)	460
AciI	CCGC	2 cut(s)	307, 313
AclWI	GGATC	4 cut(s)	13, 599, 621, 644
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	2 cut(s)	26, 560
AfiI	CCNNNNNNNGG	3 cut(s)	35, 49, 460
AgsI	TTSAA	6 cut(s)	64, 80, 169, 179, 188, 256
AjnI	CCWGG	2 cut(s)	453, 540
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
Alw21I	GWGCWC	2 cut(s)	412, 429
Alw44I	GTGCAC	1 cut(s)	408
AlwI	GGATC	4 cut(s)	13, 599, 621, 644
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	2 cut(s)	537, 543
ApaI	GGGCCC	1 cut(s)	541
ApaLI	GTGCAC	1 cut(s)	408
ApeKI	GCWGC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	537, 538
AvaI	CYCGRG	1 cut(s)	228
BaeGI	GKGCMC	2 cut(s)	412, 541
BanI	GGYRCC	1 cut(s)	441
BanII	GRGCYC	1 cut(s)	541
Bbv12I	GWGCWC	2 cut(s)	412, 429
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	3 cut(s)	83, 524, 559
BciT130I	CCWGG	2 cut(s)	455, 542
BclI	TGATCA	1 cut(s)	111
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	515
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	455, 542
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	537, 538
BmiI	GGNNCC	3 cut(s)	125, 443, 539
BmrFI	CCNGG	2 cut(s)	455, 542
BmsI	GCATC	1 cut(s)	80
BsaBI	GATNNNNATC	3 cut(s)	552, 597, 603
BsaJI	CCNNGG	4 cut(s)	192, 413, 540, 609
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 49, 460
Bse8I	GATNNNNATC	3 cut(s)	552, 597, 603
BseBI	CCWGG	2 cut(s)	455, 542
BseDI	CCNNGG	4 cut(s)	192, 413, 540, 609
BseGI	GGATG	3 cut(s)	58, 94, 202
BseJI	GATNNNNATC	3 cut(s)	552, 597, 603
BseLI	CCNNNNNNNGG	3 cut(s)	35, 49, 460
BseRI	GAGGAG	3 cut(s)	266, 331, 359
BseSI	GKGCMC	2 cut(s)	412, 541
BseXI	GCAGC	1 cut(s)	114
BseYI	CCCAGC	1 cut(s)	84
BshFI	GGCC	2 cut(s)	539, 545
BshNI	GGYRCC	1 cut(s)	441
BsiHKAI	GWGCWC	2 cut(s)	412, 429
BsiHKCI	CYCGRG	1 cut(s)	228
BslI	CCNNNNNNNGG	3 cut(s)	35, 49, 460
BsnI	GGCC	2 cut(s)	539, 545
BsoBI	CYCGRG	1 cut(s)	228
Bsp120I	GGGCCC	1 cut(s)	537
Bsp1286I	GDGCHC	3 cut(s)	412, 429, 541
Bsp143I	GATC	7 cut(s)	18, 111, 553, 598, 604, 613, 636
Bsp19I	CCATGG	3 cut(s)	192, 413, 609
BspACI	CCGC	2 cut(s)	307, 313
BspANI	GGCC	2 cut(s)	539, 545
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	3 cut(s)	125, 443, 539
BspMAI	CTGCAG	1 cut(s)	208
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	4 cut(s)	13, 599, 621, 644
BspT107I	GGYRCC	1 cut(s)	441
BssECI	CCNNGG	4 cut(s)	192, 413, 540, 609
BssMI	GATC	7 cut(s)	18, 111, 553, 598, 604, 613, 636
BssT1I	CCWWGG	3 cut(s)	192, 413, 609
Bst2UI	CCWGG	2 cut(s)	455, 542
Bst6I	CTCTTC	1 cut(s)	532
BstC8I	GCNNGC	3 cut(s)	204, 215, 481
BstDSI	CCRYGG	3 cut(s)	192, 413, 609
BstF5I	GGATG	3 cut(s)	58, 94, 202
BstKTI	GATC	7 cut(s)	21, 114, 556, 601, 607, 616, 639
BstMBI	GATC	7 cut(s)	18, 111, 553, 598, 604, 613, 636
BstMWI	GCNNNNNNNGC	1 cut(s)	424
BstNI	CCWGG	2 cut(s)	455, 542
BstSCI	CCNGG	2 cut(s)	453, 540
BstSFI	CTRYAG	1 cut(s)	204
BstSLI	GKGCMC	2 cut(s)	412, 541
BstV1I	GCAGC	1 cut(s)	114
BstX2I	RGATCY	3 cut(s)	18, 613, 636
BstYI	RGATCY	3 cut(s)	18, 613, 636
BsuRI	GGCC	2 cut(s)	539, 545
BtgI	CCRYGG	3 cut(s)	192, 413, 609
BtsCI	GGATG	3 cut(s)	58, 94, 202
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	3 cut(s)	204, 215, 481
CciI	TCATGA	1 cut(s)	601
Cfr13I	GGNCC	2 cut(s)	537, 538
Csp6I	GTAC	2 cut(s)	25, 559
CspCI	CAANNNNNGTGG	2 cut(s)	349, 384
CviAII	CATG	8 cut(s)	115, 120, 193, 261, 405, 414, 602, 610
CviQI	GTAC	2 cut(s)	25, 559
DpnI	GATC	7 cut(s)	20, 113, 555, 600, 606, 615, 638
DpnII	GATC	7 cut(s)	18, 111, 553, 598, 604, 613, 636
Eam1104I	CTCTTC	1 cut(s)	532
EarI	CTCTTC	1 cut(s)	532
EciI	GGCGGA	1 cut(s)	328
Eco130I	CCWWGG	3 cut(s)	192, 413, 609
Eco24I	GRGCYC	1 cut(s)	541
Eco32I	GATATC	1 cut(s)	580
Eco57I	CTGAAG	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	537
EcoRII	CCWGG	2 cut(s)	453, 540
EcoRV	GATATC	1 cut(s)	580
EcoT14I	CCWWGG	3 cut(s)	192, 413, 609
EcoT38I	GRGCYC	1 cut(s)	541
ErhI	CCWWGG	3 cut(s)	192, 413, 609
FaeI	CATG	8 cut(s)	118, 123, 196, 264, 408, 417, 605, 613
FalI	AAGNNNNNCTT	1 cut(s)	625
FatI	CATG	8 cut(s)	114, 119, 192, 260, 404, 413, 601, 609
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	3 cut(s)	65, 101, 209
FriOI	GRGCYC	1 cut(s)	541
Fsp4HI	GCNGC	1 cut(s)	103
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	1 cut(s)	103
GsaI	CCCAGC	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	539, 545
Hin1II	CATG	8 cut(s)	118, 123, 196, 264, 408, 417, 605, 613
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	2 cut(s)	490, 532
Hpy188III	TCNNGA	3 cut(s)	230, 241, 602
Hpy8I	GTNNAC	1 cut(s)	410
HpyAV	CCTTC	5 cut(s)	53, 185, 296, 461, 469
HpyCH4V	TGCA	7 cut(s)	157, 206, 217, 248, 264, 410, 510
HpyF10VI	GCNNNNNNNGC	1 cut(s)	424
Hsp92II	CATG	8 cut(s)	118, 123, 196, 264, 408, 417, 605, 613
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	7 cut(s)	18, 111, 553, 598, 604, 613, 636
LmnI	GCTCC	1 cut(s)	279
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	1 cut(s)	107
MalI	GATC	7 cut(s)	20, 113, 555, 600, 606, 615, 638
MboI	GATC	7 cut(s)	18, 111, 553, 598, 604, 613, 636
MboII	GAAGA	3 cut(s)	519, 608, 608
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	3 cut(s)	18, 613, 636
MhlI	GDGCHC	3 cut(s)	412, 429, 541
MluCI	AATT	3 cut(s)	31, 96, 351
MmeI	TCCRAC	2 cut(s)	321, 375
MnlI	CCTC	8 cut(s)	49, 287, 309, 312, 324, 337, 340, 593
MseI	TTAA	3 cut(s)	354, 432, 643
MslI	CAYNNNNRTG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	455, 542
MunI	CAATTG	1 cut(s)	96
MvaI	CCWGG	2 cut(s)	455, 542
MwoI	GCNNNNNNNGC	1 cut(s)	424
NcoI	CCATGG	3 cut(s)	192, 413, 609
NdeII	GATC	7 cut(s)	18, 111, 553, 598, 604, 613, 636
NlaIII	CATG	8 cut(s)	118, 123, 196, 264, 408, 417, 605, 613
NlaIV	GGNNCC	3 cut(s)	125, 443, 539
PagI	TCATGA	1 cut(s)	601
PaqCI	CACCTGC	1 cut(s)	515
PflMI	CCANNNNNTGG	1 cut(s)	460
PkrI	GCNGC	1 cut(s)	104
Psp6I	CCWGG	2 cut(s)	453, 540
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	2 cut(s)	453, 540
PspN4I	GGNNCC	3 cut(s)	125, 443, 539
PspOMI	GGGCCC	1 cut(s)	537
PspPI	GGNCC	2 cut(s)	537, 538
PstI	CTGCAG	1 cut(s)	208
PsuI	RGATCY	3 cut(s)	18, 613, 636
RsaI	GTAC	2 cut(s)	26, 560
RsaNI	GTAC	2 cut(s)	25, 559
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	354, 432, 643
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	7 cut(s)	18, 111, 553, 598, 604, 613, 636
Sau96I	GGNCC	2 cut(s)	537, 538
ScrFI	CCNGG	2 cut(s)	455, 542
SduI	GDGCHC	3 cut(s)	412, 429, 541
SetI	ASST	7 cut(s)	145, 215, 323, 335, 351, 360, 509
SfaNI	GCATC	1 cut(s)	80
SfcI	CTRYAG	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	197
Sse9I	AATT	3 cut(s)	31, 96, 351
SsiI	CCGC	2 cut(s)	307, 313
SspI	AATATT	3 cut(s)	164, 268, 436
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	453, 540
StyI	CCWWGG	3 cut(s)	192, 413, 609
TaqI	TCGA	1 cut(s)	242
TasI	AATT	3 cut(s)	31, 96, 351
TatI	WGTACW	1 cut(s)	558
Tru1I	TTAA	3 cut(s)	354, 432, 643
Tru9I	TTAA	3 cut(s)	354, 432, 643
TseI	GCWGC	1 cut(s)	102
TspDTI	ATGAA	2 cut(s)	510, 609
Van91I	CCANNNNNTGG	1 cut(s)	460
VneI	GTGCAC	1 cut(s)	408
XcmI	CCANNNNNNNNNTGG	2 cut(s)	411, 616
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.