MD09G1110600.v1.1

Glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0017735
Physical Location & Seq
Forward (+)
8219396 .. 8220571
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1110600.v1.1.491

Sequence Viewer

Length: 1176 bp
ATGGTTGTCTCTCGAAAATGGCTGTCTTTGAGTCTTGTTGTTCTGTACATTGTCCTCCAGCTGAGTGCAGTCACCACTCTAGGTGATGAGAAAGTTGACAAAACTAGATTTCGCGGTGATGATGATGATTGCCAATTGGGTCGGAGAAGTGGTGGTCGGTTTGGTCGAGGGAATCGCGGTAGGGGACCTAGGGGCGGTGGCTTTGGAGGCAGAGCCGGAGGAGGAGGAGGAGGCTTTGGTGGTGGTGGAGGAGCAGGGGCTGGTGGTGGTATAGGTGGTGGAGCTGGAGGAGGAGTTGGAGGTGGTGTTGGAGGCGGTGGTGGTATTGGCGGTGGTGGAGGCGCTGGTGGTGGTGGAGGAGGTGGTCTTGGAGGTGGGTCAGGTCATGGTGGAGGTTTTGGAGCTGGAGGGGGTGTAGGTGGTGGAGTTGGTGGTGGGATTGGAGGTGGTGGTGGTGGTGGAGCTGGTGGAGGAGGCGGTGGCGGAGTTGGTGGCGGTTCTGGGCATGGTGGAGGTTTTGGAGCTGGAGGTGGTGTAGGTGGAGGTGTTGGAGGAGGTGGTGGTCTTGGAGGAGGCGGCGGAGGTGGTTCAGGAGGAGGTGGTGGTGTTGGTGGAGGTTCAGGCCAAGGAGGCGGGTTTGGTGCCGGTGGTGGAGTAGGAGGTGGAGCTGGAGGGGGCGTTGGTGGTGGAGGAGGAGCAGGAGGAGGTGGTGGCGGTGGTGTTGGTGGAGGTTCAGGCCATGGAGGCGGTTTTGGTGCAGGAGGTGGTGTAGGAGGTGGAGCTGGAGGGGGCGTTGGTGGTGGGGGAGGTGGAGGTGGAGGTGGTGGGGGTGGCCGTGGTGTTGGTGGAGGATCAGGCCATGGAGGCGGTTTTGGCGCAGGAGGTGGTGTCGGAGGTGGAGCTGGCGGAGGTGTTGGTGGTGGAGGAGGTGCAGGAGGAGGAGGAGGTGGTGGTCTCGGTGGAGGTTCAGGTCATGGAGGTGGTTTTGGTGCTGGTGGTGGTGTAGGAGGCGGAGGTGGAGTTGGTGGCGGCCTAGGAAGTGGAGGAGGTGCTGGTGGGGGCGGTGGCAGTGGTGGAGGATTTGGAATTGGAATTGGGGTTGGCATAGGTGTGGGAGCTGGCGCCGGTAGTGGCCAAGGGTCTGGAAGTGGATCCAGTGGAGGTGGTGGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

392

Amino Acids

29.53

Weight (kDa)

11.35

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017735)

Species Orthologous Gene IDs
malus_domestica MD09G1110600.v1.1 MD17G1098400.v1.1
pyrus_communis pycom09g03300 pycom17g09380
rosa_chinensis RchiOBHm_Chr2g0158961
rosa_laevigata RLG00000021128
rosa_roxburghii Rroxscaffold_2G00090840
rosa_rugosa Rorug02G0473200
rosa_samantha Rh2AG539800 Rh2CG523100 Rh2DG562400
rosa_wichuraiana Rw2G044680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 641, 1121
AccII CGCG 2 cut(s) 114, 177
AclWI GGATC 3 cut(s) 859, 1146, 1159
AcoI YGGCCR 2 cut(s) 832, 1132
AcyI GRCGYC 1 cut(s) 1122
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 194
AluBI AGCT 9 cut(s) 61, 284, 404, 464, 524, 668, 782, 902, 1118
AluI AGCT 9 cut(s) 61, 284, 404, 464, 524, 668, 782, 902, 1118
Alw26I GTCTC 2 cut(s) 13, 959
AlwI GGATC 3 cut(s) 859, 1146, 1159
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 6 cut(s) 622, 736, 832, 856, 1030, 1132
AspA2I CCTAGG 2 cut(s) 188, 1033
AspLEI GCGC 3 cut(s) 344, 878, 1124
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 3 cut(s) 64, 95, 128
AvaII GGWCC 1 cut(s) 185
AvrII CCTAGG 2 cut(s) 188, 1033
BalI TGGCCA 1 cut(s) 1134
BamHI GGATCC 1 cut(s) 1151
BanI GGYRCC 2 cut(s) 641, 1121
BceAI ACGGC 1 cut(s) 819
BcoDI GTCTC 2 cut(s) 13, 959
BfaI CTAG 4 cut(s) 80, 105, 189, 1034
BfoI RGCGCY 2 cut(s) 345, 1125
BglI GCCNNNNNGGC 3 cut(s) 630, 744, 864
BisI GCNGC 2 cut(s) 577, 1030
BlnI CCTAGG 2 cut(s) 188, 1033
BlsI GCNGC 2 cut(s) 578, 1031
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 4 cut(s) 186, 643, 1123, 1153
BpmI CTGGAG 6 cut(s) 41, 306, 426, 546, 690, 804
BsaHI GRCGYC 1 cut(s) 1122
BsaI GGTCTC 1 cut(s) 959
BsaJI CCNNGG 7 cut(s) 188, 625, 739, 835, 859, 1033, 1135
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse118I RCCGGY 2 cut(s) 644, 1124
Bse1I ACTGG 1 cut(s) 1155
BseDI CCNNGG 7 cut(s) 188, 625, 739, 835, 859, 1033, 1135
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 1155
BsgI GTGCAG 3 cut(s) 87, 777, 951
Bsh1236I CGCG 2 cut(s) 114, 177
BshFI GGCC 6 cut(s) 624, 738, 834, 858, 1032, 1134
BshNI GGYRCC 2 cut(s) 641, 1121
BsiSI CCGG 3 cut(s) 216, 645, 1125
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 2 cut(s) 13, 959
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 6 cut(s) 624, 738, 834, 858, 1032, 1134
Bso31I GGTCTC 1 cut(s) 959
Bsp1407I TGTACA 1 cut(s) 45
Bsp143I GATC 2 cut(s) 851, 1151
Bsp19I CCATGG 2 cut(s) 739, 859
BspANI GGCC 6 cut(s) 624, 738, 834, 858, 1032, 1134
BspCNI CTCAG 1 cut(s) 54
BspFNI CGCG 2 cut(s) 114, 177
BspLI GGNNCC 4 cut(s) 186, 643, 1123, 1153
BspPI GGATC 3 cut(s) 859, 1146, 1159
BspT107I GGYRCC 2 cut(s) 641, 1121
BspTNI GGTCTC 1 cut(s) 959
BsrFI RCCGGY 2 cut(s) 644, 1124
BsrGI TGTACA 1 cut(s) 45
BsrI ACTGG 1 cut(s) 1155
BssAI RCCGGY 2 cut(s) 644, 1124
BssECI CCNNGG 7 cut(s) 188, 625, 739, 835, 859, 1033, 1135
BssMI GATC 2 cut(s) 851, 1151
BssNI GRCGYC 1 cut(s) 1122
BssT1I CCWWGG 6 cut(s) 188, 625, 739, 859, 1033, 1135
BstACI GRCGYC 1 cut(s) 1122
BstAUI TGTACA 1 cut(s) 45
BstC8I GCNNGC 2 cut(s) 904, 1120
BstDEI CTNAG 1 cut(s) 62
BstDSI CCRYGG 3 cut(s) 739, 835, 859
BstFNI CGCG 2 cut(s) 114, 177
BstH2I RGCGCY 2 cut(s) 345, 1125
BstHHI GCGC 3 cut(s) 344, 878, 1124
BstKTI GATC 2 cut(s) 854, 1154
BstMAI GTCTC 2 cut(s) 13, 959
BstMBI GATC 2 cut(s) 851, 1151
BstMWI GCNNNNNNNGC 5 cut(s) 207, 630, 744, 864, 873
BstUI CGCG 2 cut(s) 114, 177
BstX2I RGATCY 1 cut(s) 1151
BstXI CCANNNNNNTGG 1 cut(s) 1142
BstYI RGATCY 1 cut(s) 1151
BsuRI GGCC 6 cut(s) 624, 738, 834, 858, 1032, 1134
BtgI CCRYGG 3 cut(s) 739, 835, 859
BtsI GCAGTG 1 cut(s) 1075
BtsIMutI CAGTG 2 cut(s) 1075, 1162
Cac8I GCNNGC 2 cut(s) 904, 1120
CaiI CAGNNNCTG 1 cut(s) 260
CfoI GCGC 3 cut(s) 344, 878, 1124
Cfr10I RCCGGY 2 cut(s) 644, 1124
Cfr13I GGNCC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 46
CviAII CATG 5 cut(s) 386, 506, 740, 860, 974
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 62
DinI GGCGCC 1 cut(s) 1123
DpnI GATC 2 cut(s) 853, 1153
DpnII GATC 2 cut(s) 851, 1151
EaeI YGGCCR 2 cut(s) 832, 1132
EciI GGCGGA 4 cut(s) 498, 594, 921, 1026
Eco130I CCWWGG 6 cut(s) 188, 625, 739, 859, 1033, 1135
Eco31I GGTCTC 1 cut(s) 959
Eco47I GGWCC 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 185
EcoT14I CCWWGG 6 cut(s) 188, 625, 739, 859, 1033, 1135
EgeI GGCGCC 1 cut(s) 1123
EheI GGCGCC 1 cut(s) 1123
ErhI CCWWGG 6 cut(s) 188, 625, 739, 859, 1033, 1135
FaeI CATG 5 cut(s) 389, 509, 743, 863, 977
FaiI YATR 7 cut(s) 272, 387, 507, 741, 861, 975, 1106
FaqI GGGAC 1 cut(s) 198
FatI CATG 5 cut(s) 385, 505, 739, 859, 973
FauI CCCGC 1 cut(s) 626
Fnu4HI GCNGC 2 cut(s) 577, 1030
Fsp4HI GCNGC 2 cut(s) 577, 1030
FspBI CTAG 4 cut(s) 80, 105, 189, 1034
GlaI GCGC 3 cut(s) 343, 877, 1123
GluI GCNGC 2 cut(s) 577, 1030
GsuI CTGGAG 6 cut(s) 41, 306, 426, 546, 690, 804
HaeII RGCGCY 2 cut(s) 345, 1125
HaeIII GGCC 6 cut(s) 624, 738, 834, 858, 1032, 1134
HapII CCGG 3 cut(s) 216, 645, 1125
HhaI GCGC 3 cut(s) 344, 878, 1124
Hin1I GRCGYC 1 cut(s) 1122
Hin1II CATG 5 cut(s) 389, 509, 743, 863, 977
Hin6I GCGC 3 cut(s) 342, 876, 1122
HinP1I GCGC 3 cut(s) 342, 876, 1122
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 2 cut(s) 31, 172
HpaII CCGG 3 cut(s) 216, 645, 1125
HphI GGTGA 3 cut(s) 64, 95, 128
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 144, 893
Hpy188III TCNNGA 3 cut(s) 12, 591, 1143
Hpy8I GTNNAC 1 cut(s) 97
HpyCH4V TGCA 3 cut(s) 68, 758, 932
HpyF10VI GCNNNNNNNGC 5 cut(s) 207, 630, 744, 864, 873
HpyF3I CTNAG 1 cut(s) 62
Hsp92I GRCGYC 1 cut(s) 1122
Hsp92II CATG 5 cut(s) 389, 509, 743, 863, 977
HspAI GCGC 3 cut(s) 342, 876, 1122
KasI GGCGCC 1 cut(s) 1121
Kzo9I GATC 2 cut(s) 851, 1151
MaeI CTAG 4 cut(s) 80, 105, 189, 1034
MaeIII GTNAC 1 cut(s) 70
MalI GATC 2 cut(s) 853, 1153
MboI GATC 2 cut(s) 851, 1151
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 1 cut(s) 1151
MlsI TGGCCA 1 cut(s) 1134
MluCI AATT 4 cut(s) 134, 1086, 1092, 1171
MluNI TGGCCA 1 cut(s) 1134
Mly113I GGCGCC 1 cut(s) 1122
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 5 cut(s) 122, 277, 289, 529, 871
Mox20I TGGCCA 1 cut(s) 1134
MscI TGGCCA 1 cut(s) 1134
MseI TTAA 1 cut(s) 1174
MslI CAYNNNNRTG 2 cut(s) 978, 1109
Msp20I TGGCCA 1 cut(s) 1134
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 3 cut(s) 216, 645, 1125
MunI CAATTG 1 cut(s) 134
MvnI CGCG 2 cut(s) 114, 177
MwoI GCNNNNNNNGC 5 cut(s) 207, 630, 744, 864, 873
NarI GGCGCC 1 cut(s) 1122
NcoI CCATGG 2 cut(s) 739, 859
NdeII GATC 2 cut(s) 851, 1151
NlaIII CATG 5 cut(s) 389, 509, 743, 863, 977
NlaIV GGNNCC 4 cut(s) 186, 643, 1123, 1153
NmuCI GTSAC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 2 cut(s) 578, 1031
PleI GAGTC 1 cut(s) 39
PluTI GGCGCC 1 cut(s) 1125
PpsI GAGTC 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 185
Psp5II RGGWCCY 1 cut(s) 185
PspN4I GGNNCC 4 cut(s) 186, 643, 1123, 1153
PspPI GGNCC 1 cut(s) 185
PspPPI RGGWCCY 1 cut(s) 185
PstNI CAGNNNCTG 1 cut(s) 260
PsuI RGATCY 1 cut(s) 1151
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
RseI CAYNNNNRTG 2 cut(s) 978, 1109
SaqAI TTAA 1 cut(s) 1174
SatI GCNGC 2 cut(s) 577, 1030
Sau3AI GATC 2 cut(s) 851, 1151
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 40
SfoI GGCGCC 1 cut(s) 1123
SinI GGWCC 1 cut(s) 185
SmiMI CAYNNNNRTG 2 cut(s) 978, 1109
Sse9I AATT 4 cut(s) 134, 1086, 1092, 1171
SspDI GGCGCC 1 cut(s) 1121
SspMI CTAG 4 cut(s) 80, 105, 189, 1034
StyI CCWWGG 6 cut(s) 188, 625, 739, 859, 1033, 1135
TaqI TCGA 2 cut(s) 13, 166
TasI AATT 4 cut(s) 134, 1086, 1092, 1171
TatI WGTACW 1 cut(s) 45
TauI GCSGC 2 cut(s) 579, 1032
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 1 cut(s) 1174
Tru9I TTAA 1 cut(s) 1174
TscAI CASTG 2 cut(s) 1075, 1162
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
TspRI CASTG 2 cut(s) 1075, 1162
VpaK11BI GGWCC 1 cut(s) 185
XmaJI CCTAGG 2 cut(s) 188, 1033
XspI CTAG 4 cut(s) 80, 105, 189, 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.