pycom09g03300

Glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0017735
Physical Location & Seq
Forward (+)
2460566 .. 2461214
649 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03300.1

Sequence Viewer

Length: 609 bp
ATGGTTGTCTCTCGAAAATGGCTGTCTTTGAGTCTTGTTGTTCTATACATTGTCCTCCAACTGAGTGCAGTCACCACTCTAGGTGATGAGAAAGTGGACAAAACTAGATTTCGCGGTGATGATGATGATTGCCAATGGGGTCGGAGATGTGGTGGTCGGTTTGGTCGAGGGAATCACGGTAGGGGACCTAGGGGCGGTGGCTTTGGAGGCGGAGCCGGAAGAGGAGGCTTTGGCGGTGGTGGAGGAATTGGTGGAGGAGCAGGGGCTGGTGGTGGTATAGGTGGTGGAGCTGGAGGAGGAGTTGGAGGCGGTGGTGGAGGCGCCGGTGGTGGTCTTGGAGGTGGGTCAGGTCATGGTGGAGGTTTTGGAGCTGGAGGGGGTGTAGGGGGAGGTGTTGGAGGAGGTGGTGGTCTTGGAGGAGGCGGTGGAGGTGGTTCAGGAGGAGGTGGTGGTGTTGGTGGAGGTTCAGGCCAGGGAGGCGGGTTTGGTGCCGGTGGTGGAGTAGGAGGTGGAGCTGGAGGGGGCGTCGGTGGCGGAGGAGGAGCAGGAGGAGGCGTTGGTGGCGGAGGAGGAGCAGGAGGAGGTGGTGGCGGCGGTGAGGTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

16.62

Weight (kDa)

10.03

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017735)

Species Orthologous Gene IDs
malus_domestica MD09G1110600.v1.1 MD17G1098400.v1.1
pyrus_communis pycom09g03300 pycom17g09380
rosa_chinensis RchiOBHm_Chr2g0158961
rosa_laevigata RLG00000021128
rosa_roxburghii Rroxscaffold_2G00090840
rosa_rugosa Rorug02G0473200
rosa_samantha Rh2AG539800 Rh2CG523100 Rh2DG562400
rosa_wichuraiana Rw2G044680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 320, 488
AccII CGCG 1 cut(s) 114
AcyI GRCGYC 2 cut(s) 321, 525
AfiI CCNNNNNNNGG 1 cut(s) 194
AjnI CCWGG 1 cut(s) 471
AluBI AGCT 3 cut(s) 290, 371, 515
AluI AGCT 3 cut(s) 290, 371, 515
Alw26I GTCTC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 1 cut(s) 469
AspA2I CCTAGG 1 cut(s) 188
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 4 cut(s) 64, 95, 128, 608
AvaII GGWCC 1 cut(s) 185
AvrII CCTAGG 1 cut(s) 188
BanI GGYRCC 2 cut(s) 320, 488
BciT130I CCWGG 1 cut(s) 473
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 3 cut(s) 80, 105, 189
BfoI RGCGCY 1 cut(s) 324
BglI GCCNNNNNGGC 1 cut(s) 477
BisI GCNGC 1 cut(s) 592
BlnI CCTAGG 1 cut(s) 188
BlsI GCNGC 1 cut(s) 593
Bme1390I CCNGG 1 cut(s) 473
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 4 cut(s) 186, 214, 322, 490
BmrFI CCNGG 1 cut(s) 473
BpmI CTGGAG 3 cut(s) 312, 393, 537
BsaHI GRCGYC 2 cut(s) 321, 525
BsaJI CCNNGG 2 cut(s) 188, 472
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse118I RCCGGY 2 cut(s) 323, 491
BseBI CCWGG 1 cut(s) 473
BseDI CCNNGG 2 cut(s) 188, 472
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 1 cut(s) 471
BshNI GGYRCC 2 cut(s) 320, 488
BsiSI CCGG 3 cut(s) 216, 324, 492
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 1 cut(s) 471
BspANI GGCC 1 cut(s) 471
BspCNI CTCAG 1 cut(s) 54
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 4 cut(s) 186, 214, 322, 490
BspT107I GGYRCC 2 cut(s) 320, 488
BsrFI RCCGGY 2 cut(s) 323, 491
BssAI RCCGGY 2 cut(s) 323, 491
BssECI CCNNGG 2 cut(s) 188, 472
BssNI GRCGYC 2 cut(s) 321, 525
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 473
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 214
BstACI GRCGYC 2 cut(s) 321, 525
BstDEI CTNAG 1 cut(s) 62
BstFNI CGCG 1 cut(s) 114
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 1 cut(s) 323
BstMAI GTCTC 1 cut(s) 13
BstMWI GCNNNNNNNGC 4 cut(s) 207, 477, 531, 561
BstNI CCWGG 1 cut(s) 473
BstSCI CCNGG 1 cut(s) 471
BstUI CGCG 1 cut(s) 114
BsuRI GGCC 1 cut(s) 471
CaiI CAGNNNCTG 1 cut(s) 266
CfoI GCGC 1 cut(s) 323
Cfr10I RCCGGY 2 cut(s) 323, 491
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 514
CviAII CATG 1 cut(s) 353
CviJI RGCY 9 cut(s) 22, 201, 215, 228, 266, 290, 371, 471, 515
CviKI_1 RGCY 9 cut(s) 22, 201, 215, 228, 266, 290, 371, 471, 515
DdeI CTNAG 1 cut(s) 62
DinI GGCGCC 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
EciI GGCGGA 3 cut(s) 225, 549, 579
Eco130I CCWWGG 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 471
EcoT14I CCWWGG 1 cut(s) 188
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 1 cut(s) 356
FaiI YATR 3 cut(s) 46, 278, 354
FaqI GGGAC 1 cut(s) 198
FatI CATG 1 cut(s) 352
FauI CCCGC 1 cut(s) 473
Fnu4HI GCNGC 1 cut(s) 592
Fsp4HI GCNGC 1 cut(s) 592
FspBI CTAG 3 cut(s) 80, 105, 189
GlaI GCGC 1 cut(s) 322
GluI GCNGC 1 cut(s) 592
GsuI CTGGAG 3 cut(s) 312, 393, 537
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 1 cut(s) 471
HapII CCGG 3 cut(s) 216, 324, 492
HgaI GACGC 1 cut(s) 514
HhaI GCGC 1 cut(s) 323
Hin1I GRCGYC 2 cut(s) 321, 525
Hin1II CATG 1 cut(s) 356
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HinfI GANTC 2 cut(s) 31, 172
HpaII CCGG 3 cut(s) 216, 324, 492
HphI GGTGA 4 cut(s) 64, 95, 128, 608
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 2 cut(s) 12, 438
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 1 cut(s) 530
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 4 cut(s) 207, 477, 531, 561
HpyF3I CTNAG 1 cut(s) 62
Hsp92I GRCGYC 2 cut(s) 321, 525
Hsp92II CATG 1 cut(s) 356
HspAI GCGC 1 cut(s) 321
KasI GGCGCC 1 cut(s) 320
LmnI GCTCC 7 cut(s) 212, 257, 287, 368, 512, 542, 572
MaeI CTAG 3 cut(s) 80, 105, 189
MaeIII GTNAC 1 cut(s) 70
MboII GAAGA 1 cut(s) 231
MluCI AATT 1 cut(s) 246
Mly113I GGCGCC 1 cut(s) 321
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 4 cut(s) 82, 122, 283, 376
MspI CCGG 3 cut(s) 216, 324, 492
MspR9I CCNGG 1 cut(s) 473
MvaI CCWGG 1 cut(s) 473
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 4 cut(s) 207, 477, 531, 561
NarI GGCGCC 1 cut(s) 321
NlaIII CATG 1 cut(s) 356
NlaIV GGNNCC 4 cut(s) 186, 214, 322, 490
NmuCI GTSAC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 1 cut(s) 593
PleI GAGTC 1 cut(s) 39
PluTI GGCGCC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 185
Psp5II RGGWCCY 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 471
PspGI CCWGG 1 cut(s) 471
PspN4I GGNNCC 4 cut(s) 186, 214, 322, 490
PspPI GGNCC 1 cut(s) 185
PspPPI RGGWCCY 1 cut(s) 185
PstNI CAGNNNCTG 1 cut(s) 266
SatI GCNGC 1 cut(s) 592
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 473
SfoI GGCGCC 1 cut(s) 322
SgrAI CRCCGGYG 1 cut(s) 323
SinI GGWCC 1 cut(s) 185
Sse9I AATT 1 cut(s) 246
SspDI GGCGCC 1 cut(s) 320
SspMI CTAG 3 cut(s) 80, 105, 189
StyD4I CCNGG 1 cut(s) 471
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 2 cut(s) 13, 166
TasI AATT 1 cut(s) 246
TauI GCSGC 1 cut(s) 594
TfiI GAWTC 1 cut(s) 172
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 185
XmaJI CCTAGG 1 cut(s) 188
XspI CTAG 3 cut(s) 80, 105, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.