RLG00000021128

Glycine-rich cell wall structural protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
72163970 .. 72165103
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021128

Sequence Viewer

Length: 1134 bp
ATGGGTGTCTCTCGGAAATGGCTGTCTTCGATTCTTCTTGTGCTCTGCATTGTCTTCCAGTTGAGTGCTATGTTCGCTCAGGGTGATGACAAGGTTGACAAAGCTAGATTTCGTGATGATGATTGTGGATGGGGTCGCCGCTGTGGTGGTCGCTCTGGTCGTGGTAGGGGTGGTGGCATTGGAGGAGGAGGAGGTTTTGGTGGCGGCGGAGGTCGTGGTGGAGGAGTTGGAGGTGGTATTGGTGGAGGTCATGGTGGAGGAGCTGGAGGTGGTGTAGGTGGCGGAGCTGGCGGTGGCGGTGGCTTTGGTGGTGGTGGTGGGGCTGGTGGAGGAGGTGGTGTTGGGGGTGGGGCGGGTCATGGTGGAGGTTTTGGAGCTGGAGGAGGTGTAGGCGGTGGAGCTGGTGGAGGAGTAGGAGGTGGTGTTGGTGGAGGCGGTGGTAGCGGAGGTGGTGGTGGAGTTGGAGGTGGTTCAGGGCAAGGAGGAGGCTTTGGAGCTGGGGGCGGCGTAGGTGGAGGAGGTGGAGGTCTAGGAGGAGGTGGTGGCGGTGGATCGGGAGGCGGTGGTGGTGTGGGTGGTGGTTCTGGTCAAGGAGGAGGTTTTGGTGCCGGCGGTGGTGTAGGTGGTGGAGCTGGTGGAGGTGGAGGTCTAGGAGGAGGAGGTGGCGGAGGATCTGGAGGCGGTGGTGGTGTTGGCGGTGGTTCTGGACATGGAGGAGGTTTTGGTGCTGGCGGTGGTGTAGGCGGTGGAGCTGGTGGAGGTGTAGGAGGAGGTGGTGGAGGAGGATCAGGAGGCGGTGGTGGTGTGGGTGGTGGTTCTGGCCAAGGAGGAGGTTTTGGTGCCGGTGCCGGTGTAGGCGGTGGAGTTGGTGGCGGAGGAGGTGCAGGAGGAGGTGGTGGTGGTGGTGGAGGAGCAGGAGGAGGGGGCGGTTTGGGTGGTGGTTCAGGCCAAGGCGGAGGTGTTGGAGGTGGAGGAGGCGTAGGTGGCGGAAGTGGTGGTGGAGTTGGCGGAGGTAGAGGCGGTGGCCACGGAGGAGGATTTGGAATTGGAATTGGGATTGGCATTGGAGTTGGTGCTGGTTCTGGTCAAGGAGCTGGCAGTGGAAGTGGATCCGGTGGAGGTGGTAGACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

28.37

Weight (kDa)

11.1

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017735)

Species Orthologous Gene IDs
malus_domestica MD09G1110600.v1.1 MD17G1098400.v1.1
pyrus_communis pycom09g03300 pycom17g09380
rosa_chinensis RchiOBHm_Chr2g0158961
rosa_laevigata RLG00000021128
rosa_roxburghii Rroxscaffold_2G00090840
rosa_rugosa Rorug02G0473200
rosa_samantha Rh2AG539800 Rh2CG523100 Rh2DG562400
rosa_wichuraiana Rw2G044680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 605, 839, 845
AccI GTMKAC 1 cut(s) 1126
AclWI GGATC 5 cut(s) 559, 679, 793, 1104, 1117
AcoI YGGCCR 2 cut(s) 820, 1024
AluBI AGCT 9 cut(s) 104, 263, 287, 377, 401, 497, 632, 752, 1094
AluI AGCT 9 cut(s) 104, 263, 287, 377, 401, 497, 632, 752, 1094
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 5 cut(s) 559, 679, 793, 1104, 1117
AoxI GGCC 3 cut(s) 820, 946, 1024
AsuHPI GGTGA 1 cut(s) 95
BalI TGGCCA 2 cut(s) 822, 1026
BamHI GGATCC 1 cut(s) 1109
BanI GGYRCC 3 cut(s) 605, 839, 845
BbsI GAAGAC 2 cut(s) 18, 46
Bbv12I GWGCWC 1 cut(s) 45
BccI CCATC 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 3 cut(s) 105, 530, 650
BisI GCNGC 3 cut(s) 139, 205, 505
BlsI GCNGC 3 cut(s) 140, 206, 506
BmiI GGNNCC 4 cut(s) 607, 841, 847, 1111
BpiI GAAGAC 2 cut(s) 18, 46
BpmI CTGGAG 3 cut(s) 285, 399, 696
Bpu10I CCTNAGC 1 cut(s) 78
BsaJI CCNNGG 3 cut(s) 823, 949, 1027
BsaWI WCCGGW 1 cut(s) 1112
Bse118I RCCGGY 3 cut(s) 608, 842, 848
Bse1I ACTGG 1 cut(s) 58
BseDI CCNNGG 3 cut(s) 823, 949, 1027
BseGI GGATG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 497
BsgI GTGCAG 1 cut(s) 903
BshFI GGCC 3 cut(s) 822, 948, 1026
BshNI GGYRCC 3 cut(s) 605, 839, 845
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 4 cut(s) 609, 843, 849, 1113
BsmAI GTCTC 1 cut(s) 13
BsnI GGCC 3 cut(s) 822, 948, 1026
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 4 cut(s) 551, 671, 785, 1109
BspANI GGCC 3 cut(s) 822, 948, 1026
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 4 cut(s) 607, 841, 847, 1111
BspPI GGATC 5 cut(s) 559, 679, 793, 1104, 1117
BspT107I GGYRCC 3 cut(s) 605, 839, 845
BsrFI RCCGGY 3 cut(s) 608, 842, 848
BsrI ACTGG 1 cut(s) 58
BssAI RCCGGY 3 cut(s) 608, 842, 848
BssECI CCNNGG 3 cut(s) 823, 949, 1027
BssMI GATC 4 cut(s) 551, 671, 785, 1109
BssT1I CCWWGG 2 cut(s) 823, 949
BstC8I GCNNGC 4 cut(s) 289, 610, 730, 1096
BstDEI CTNAG 1 cut(s) 78
BstDSI CCRYGG 1 cut(s) 1027
BstF5I GGATG 1 cut(s) 134
BstKTI GATC 4 cut(s) 554, 674, 788, 1112
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 4 cut(s) 551, 671, 785, 1109
BstMWI GCNNNNNNNGC 4 cut(s) 74, 288, 441, 984
BstV2I GAAGAC 2 cut(s) 18, 46
BstX2I RGATCY 2 cut(s) 671, 1109
BstYI RGATCY 2 cut(s) 671, 1109
BsuRI GGCC 3 cut(s) 822, 948, 1026
BtgI CCRYGG 1 cut(s) 1027
BtsCI GGATG 1 cut(s) 134
BtsI GCAGTG 1 cut(s) 1105
BtsIMutI CAGTG 1 cut(s) 1105
Cac8I GCNNGC 4 cut(s) 289, 610, 730, 1096
Cfr10I RCCGGY 3 cut(s) 608, 842, 848
CviAII CATG 3 cut(s) 251, 359, 710
DdeI CTNAG 1 cut(s) 78
DpnI GATC 4 cut(s) 553, 673, 787, 1111
DpnII GATC 4 cut(s) 551, 671, 785, 1109
EaeI YGGCCR 2 cut(s) 820, 1024
EciI GGCGGA 7 cut(s) 222, 297, 681, 888, 969, 1002, 1023
Eco130I CCWWGG 2 cut(s) 823, 949
EcoT14I CCWWGG 2 cut(s) 823, 949
ErhI CCWWGG 2 cut(s) 823, 949
FaeI CATG 3 cut(s) 254, 362, 713
FaiI YATR 4 cut(s) 71, 252, 360, 711
FatI CATG 3 cut(s) 250, 358, 709
FauI CCCGC 1 cut(s) 346
FblI GTMKAC 1 cut(s) 1126
Fnu4HI GCNGC 3 cut(s) 139, 205, 505
FokI GGATG 1 cut(s) 141
Fsp4HI GCNGC 3 cut(s) 139, 205, 505
FspBI CTAG 3 cut(s) 105, 530, 650
GluI GCNGC 3 cut(s) 139, 205, 505
GsaI CCCAGC 1 cut(s) 501
GsuI CTGGAG 3 cut(s) 285, 399, 696
HaeIII GGCC 3 cut(s) 822, 948, 1026
HapII CCGG 4 cut(s) 609, 843, 849, 1113
Hin1II CATG 3 cut(s) 254, 362, 713
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 1 cut(s) 31
HpaII CCGG 4 cut(s) 609, 843, 849, 1113
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 2 cut(s) 97, 1127
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 5 cut(s) 113, 555, 675, 705, 789
Hpy8I GTNNAC 2 cut(s) 97, 1127
HpyCH4V TGCA 2 cut(s) 48, 884
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 288, 441, 984
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 3 cut(s) 254, 362, 713
KroI GCCGGC 1 cut(s) 608
KroNI GCCGGC 1 cut(s) 610
Kzo9I GATC 4 cut(s) 551, 671, 785, 1109
LmnI GCTCC 9 cut(s) 260, 284, 374, 398, 494, 629, 749, 911, 1091
MaeI CTAG 3 cut(s) 105, 530, 650
MalI GATC 4 cut(s) 553, 673, 787, 1111
MboI GATC 4 cut(s) 551, 671, 785, 1109
MboII GAAGA 3 cut(s) 18, 26, 46
MflI RGATCY 2 cut(s) 671, 1109
MhlI GDGCHC 1 cut(s) 45
MlsI TGGCCA 2 cut(s) 822, 1026
MluCI AATT 2 cut(s) 1044, 1050
MluNI TGGCCA 2 cut(s) 822, 1026
MmeI TCCRAC 3 cut(s) 208, 442, 943
Mox20I TGGCCA 2 cut(s) 822, 1026
MroNI GCCGGC 1 cut(s) 608
MscI TGGCCA 2 cut(s) 822, 1026
MseI TTAA 1 cut(s) 1132
Msp20I TGGCCA 2 cut(s) 822, 1026
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 4 cut(s) 609, 843, 849, 1113
MwoI GCNNNNNNNGC 4 cut(s) 74, 288, 441, 984
NaeI GCCGGC 1 cut(s) 610
NdeII GATC 4 cut(s) 551, 671, 785, 1109
NgoMIV GCCGGC 1 cut(s) 608
NlaIII CATG 3 cut(s) 254, 362, 713
NlaIV GGNNCC 4 cut(s) 607, 841, 847, 1111
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PdiI GCCGGC 1 cut(s) 610
PfeI GAWTC 1 cut(s) 31
PkrI GCNGC 3 cut(s) 140, 206, 506
PspFI CCCAGC 1 cut(s) 497
PspN4I GGNNCC 4 cut(s) 607, 841, 847, 1111
PsuI RGATCY 2 cut(s) 671, 1109
SaqAI TTAA 1 cut(s) 1132
SatI GCNGC 3 cut(s) 139, 205, 505
Sau3AI GATC 4 cut(s) 551, 671, 785, 1109
SduI GDGCHC 1 cut(s) 45
Sse9I AATT 2 cut(s) 1044, 1050
SspMI CTAG 3 cut(s) 105, 530, 650
StyI CCWWGG 2 cut(s) 823, 949
TaqI TCGA 1 cut(s) 29
TasI AATT 2 cut(s) 1044, 1050
TauI GCSGC 3 cut(s) 141, 207, 507
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 1 cut(s) 1132
Tru9I TTAA 1 cut(s) 1132
TscAI CASTG 1 cut(s) 1105
TspGWI ACGGA 1 cut(s) 1044
TspRI CASTG 1 cut(s) 1105
XmiI GTMKAC 1 cut(s) 1126
XspI CTAG 3 cut(s) 105, 530, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.