MD09G1251400.v1.1

Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
32257207 .. 32258510
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1251400.v1.1.491

Sequence Viewer

Length: 186 bp
ATGAGCGTGTGGATTCCGGCATTGTGTACCGTAATGGAGAGGTGGTCAGTGAAGGTAGTGCGTGTGTCGTCGCCTCTAAAGCCCAGAAACACCTCTTACTTCCAGGGGTTTGAGCGGCACGGTGAAGACGAAGAGGCTGCGATGGCGGTTCCACGGGCGGTGCTGCTGGTATCCATCGATAATTAG

Protein Analysis

62

Amino Acids

6.9

Weight (kDa)

6.54

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020363)

Species Orthologous Gene IDs
malus_domestica MD04G1055000.v1.1 MD09G1251400.v1.1
pyrus_communis pycom111g02010
rosa_chinensis RchiOBHm_Chr1g0365631 RchiOBHm_Chr5g0039661
rosa_multiflora Rmu_sc0002587.1_g000045

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 115
AciI CCGC 3 cut(s) 115, 146, 158
AfaI GTAC 1 cut(s) 28
AjnI CCWGG 1 cut(s) 102
ApeKI GCWGC 2 cut(s) 137, 163
AsuHPI GGTGA 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 124, 150
BccI CCATC 2 cut(s) 136, 182
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BciT130I CCWGG 1 cut(s) 104
BciVI GTATCC 1 cut(s) 181
BfuI GTATCC 1 cut(s) 181
BisI GCNGC 3 cut(s) 116, 138, 164
BlsI GCNGC 3 cut(s) 117, 139, 165
Bme1390I CCNGG 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 132
Bsa29I ATCGAT 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 103, 152
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
BseBI CCWGG 1 cut(s) 104
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 103, 152
BseXI GCAGC 2 cut(s) 124, 150
BshVI ATCGAT 1 cut(s) 177
BsiSI CCGG 1 cut(s) 17
BspACI CCGC 3 cut(s) 115, 146, 158
BspDI ATCGAT 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 150
BsrBI CCGCTC 1 cut(s) 115
BssECI CCNNGG 2 cut(s) 103, 152
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 2 cut(s) 31, 122
Bst6I CTCTTC 1 cut(s) 126
BstDSI CCRYGG 1 cut(s) 152
BstMWI GCNNNNNNNGC 2 cut(s) 79, 143
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 124, 150
BstV2I GAAGAC 1 cut(s) 132
Bsu15I ATCGAT 1 cut(s) 177
BsuI GTATCC 1 cut(s) 181
BsuTUI ATCGAT 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 152
BtgZI GCGATG 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 54
ClaI ATCGAT 1 cut(s) 177
Csp6I GTAC 1 cut(s) 27
CviJI RGCY 2 cut(s) 82, 137
CviKI_1 RGCY 2 cut(s) 82, 137
CviQI GTAC 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 116, 138, 164
Fsp4HI GCNGC 3 cut(s) 116, 138, 164
GluI GCNGC 3 cut(s) 116, 138, 164
HapII CCGG 1 cut(s) 17
HinfI GANTC 1 cut(s) 13
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 27
Hpy8I GTNNAC 1 cut(s) 27
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 2 cut(s) 31, 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 143
LpnPI CCDG 5 cut(s) 30, 89, 97, 116, 152
Lsp1109I GCAGC 2 cut(s) 124, 150
MbiI CCGCTC 1 cut(s) 115
MboII GAAGA 2 cut(s) 137, 143
MluCI AATT 1 cut(s) 181
MnlI CCTC 4 cut(s) 33, 84, 103, 127
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 79, 143
NlaIV GGNNCC 1 cut(s) 150
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 3 cut(s) 117, 139, 165
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 150
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SatI GCNGC 3 cut(s) 116, 138, 164
ScrFI CCNGG 1 cut(s) 104
SetI ASST 3 cut(s) 44, 57, 95
Sse9I AATT 1 cut(s) 181
SsiI CCGC 3 cut(s) 115, 146, 158
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 31, 122
TaqI TCGA 1 cut(s) 177
TasI AATT 1 cut(s) 181
TauI GCSGC 1 cut(s) 118
TfiI GAWTC 1 cut(s) 13
TscAI CASTG 1 cut(s) 54
TseI GCWGC 2 cut(s) 137, 163
TspRI CASTG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.