Rmu_sc0002587.1_g000045

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002587.1
OG0020363
Physical Location & Seq
Reverse (-)
142902 .. 143614
713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002587.1_g000045.1.cds

Sequence Viewer

Length: 531 bp
atggcaaacctggattgctcgattgcagtgaggagctccggagagatggatgtgcctctttcaagttctgggtcgtcccggaaagtcctgattcctcgccactgcaacttgtcgtataaatggtctgtgaagccctttcgggtgtcttcgcatctgaattcattggatggtgtcacgagcaagacgaatgtttacttgtttatgcattcatgccgaacaacagtcttgacacccatttatttggctgtggagaagctttgccgtgggattttagagtatgcactctatgggaaagcgaataaagaatcggacatgtttagcttgggagttgcggccttggaaattgcatgtggaaggagaacttacaaagatggagaatatcatgtgccactatttgagtgggtttggaaattgtacatttcaggaaatcttcttgatgcagctgatgagagaatgaatatgaattatcgtcaaaatgagatggaatgtcttttgattgtgggattatggtgtgctcaccccaaccactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

176

Amino Acids

19.93

Weight (kDa)

8.15

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020363)

Species Orthologous Gene IDs
malus_domestica MD04G1055000.v1.1 MD09G1251400.v1.1
pyrus_communis pycom111g02010
rosa_chinensis RchiOBHm_Chr1g0365631 RchiOBHm_Chr5g0039661
rosa_multiflora Rmu_sc0002587.1_g000045

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 38
AciI CCGC 1 cut(s) 332
AcsI RAATTY 1 cut(s) 157
AfaI GTAC 1 cut(s) 416
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 1 cut(s) 63
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 4 cut(s) 36, 256, 321, 443
AluI AGCT 4 cut(s) 36, 256, 321, 443
Alw21I GWGCWC 2 cut(s) 38, 517
Aor13HI TCCGGA 1 cut(s) 38
AoxI GGCC 1 cut(s) 333
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 1 cut(s) 157
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 509
BanII GRGCYC 1 cut(s) 38
BauI CACGAG 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 2 cut(s) 38, 517
BbvI GCAGC 1 cut(s) 452
BccI CCATC 4 cut(s) 40, 161, 365, 475
BceAI ACGGC 1 cut(s) 246
BciT130I CCWGG 1 cut(s) 11
BcnI CCSGG 1 cut(s) 79
BfaI CTAG 1 cut(s) 529
BisI GCNGC 2 cut(s) 333, 441
BlsI GCNGC 2 cut(s) 334, 442
Bme1390I CCNGG 2 cut(s) 11, 79
BmrFI CCNGG 2 cut(s) 11, 79
BmsI GCATC 2 cut(s) 160, 427
BpiI GAAGAC 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 79
BsaJI CCNNGG 2 cut(s) 262, 336
BsaWI WCCGGW 1 cut(s) 38
BseAI TCCGGA 1 cut(s) 38
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 262, 336
BseGI GGATG 2 cut(s) 55, 172
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 452
BshFI GGCC 1 cut(s) 335
BsiHKAI GWGCWC 2 cut(s) 38, 517
BsiSI CCGG 2 cut(s) 39, 79
BslFI GGGAC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 61
BsmI GAATGC 1 cut(s) 205
BsnI GGCC 1 cut(s) 335
Bsp1286I GDGCHC 2 cut(s) 38, 517
Bsp13I TCCGGA 1 cut(s) 38
Bsp1407I TGTACA 1 cut(s) 414
BspACI CCGC 1 cut(s) 332
BspANI GGCC 1 cut(s) 335
BspEI TCCGGA 1 cut(s) 38
BsrGI TGTACA 1 cut(s) 414
BssECI CCNNGG 2 cut(s) 262, 336
BssSI CACGAG 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 223
BstAUI TGTACA 1 cut(s) 414
BstDSI CCRYGG 1 cut(s) 262
BstF5I GGATG 2 cut(s) 55, 172
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 2 cut(s) 316, 351
BstSCI CCNGG 2 cut(s) 9, 77
BstV1I GCAGC 1 cut(s) 452
BstV2I GAAGAC 1 cut(s) 138
BstXI CCANNNNNNTGG 1 cut(s) 241
BsuRI GGCC 1 cut(s) 335
BtgI CCRYGG 1 cut(s) 262
BtsCI GGATG 2 cut(s) 55, 172
BtsI GCAGTG 2 cut(s) 33, 100
BtsIMutI CAGTG 2 cut(s) 33, 100
Csp6I GTAC 1 cut(s) 415
CviAII CATG 4 cut(s) 210, 313, 348, 383
CviJI RGCY 7 cut(s) 36, 133, 245, 256, 321, 335, 443
CviKI_1 RGCY 7 cut(s) 36, 133, 245, 256, 321, 335, 443
CviQI GTAC 1 cut(s) 415
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 36
EcoICRI GAGCTC 1 cut(s) 36
EcoRI GAATTC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 4 cut(s) 213, 316, 351, 386
FalI AAGNNNNNCTT 2 cut(s) 346, 378
FaqI GGGAC 1 cut(s) 61
FatI CATG 4 cut(s) 209, 312, 347, 382
Fnu4HI GCNGC 2 cut(s) 333, 441
FokI GGATG 2 cut(s) 62, 179
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 333, 441
FspBI CTAG 1 cut(s) 529
GluI GCNGC 2 cut(s) 333, 441
HaeIII GGCC 1 cut(s) 335
HapII CCGG 2 cut(s) 39, 79
Hin1II CATG 4 cut(s) 213, 316, 351, 386
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 2 cut(s) 91, 305
HpaII CCGG 2 cut(s) 39, 79
HphI GGTGA 1 cut(s) 509
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 2 cut(s) 156, 310
Hpy188III TCNNGA 6 cut(s) 39, 88, 175, 226, 423, 434
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 348
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 6 cut(s) 26, 105, 205, 281, 347, 440
Hsp92II CATG 4 cut(s) 213, 316, 351, 386
Kpn2I TCCGGA 1 cut(s) 38
LmnI GCTCC 2 cut(s) 33, 41
LpnPI CCDG 6 cut(s) 23, 52, 54, 92, 101, 408
Lsp1109I GCAGC 1 cut(s) 452
LweI GCATC 2 cut(s) 160, 427
MaeI CTAG 1 cut(s) 529
MaeIII GTNAC 1 cut(s) 172
MboII GAAGA 2 cut(s) 138, 422
MhlI GDGCHC 2 cut(s) 38, 517
MluCI AATT 4 cut(s) 157, 342, 410, 463
MnlI CCTC 3 cut(s) 24, 66, 105
Mph1103I ATGCAT 1 cut(s) 207
MroI TCCGGA 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 2 cut(s) 39, 79
MspR9I CCNGG 2 cut(s) 11, 79
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 1 cut(s) 11
NciI CCSGG 1 cut(s) 79
NlaIII CATG 4 cut(s) 213, 316, 351, 386
NmuCI GTSAC 1 cut(s) 172
NsiI ATGCAT 1 cut(s) 207
NspI RCATGY 2 cut(s) 316, 351
PciI ACATGT 1 cut(s) 312
PcsI WCGNNNNNNNCGW 1 cut(s) 182
PctI GAATGC 1 cut(s) 205
PfeI GAWTC 2 cut(s) 91, 305
PfoI TCCNGGA 1 cut(s) 77
PkrI GCNGC 2 cut(s) 334, 442
PscI ACATGT 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SacI GAGCTC 1 cut(s) 38
SatI GCNGC 2 cut(s) 333, 441
ScrFI CCNGG 2 cut(s) 11, 79
SduI GDGCHC 2 cut(s) 38, 517
SetI ASST 5 cut(s) 12, 38, 258, 323, 445
SfaNI GCATC 2 cut(s) 160, 427
Sse9I AATT 4 cut(s) 157, 342, 410, 463
SsiI CCGC 1 cut(s) 332
SspMI CTAG 1 cut(s) 529
SstI GAGCTC 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 9, 77
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 223
TaqI TCGA 1 cut(s) 20
TasI AATT 4 cut(s) 157, 342, 410, 463
TatI WGTACW 1 cut(s) 414
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 2 cut(s) 91, 305
TscAI CASTG 2 cut(s) 33, 107
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 4 cut(s) 150, 198, 470, 476
TspRI CASTG 2 cut(s) 33, 107
XapI RAATTY 1 cut(s) 157
XceI RCATGY 2 cut(s) 316, 351
XcmI CCANNNNNNNNNTGG 1 cut(s) 396
XspI CTAG 1 cut(s) 529
Zsp2I ATGCAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.