Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0020363

Physical Location & Seq

Genomic Coordinates Forward (+)

1195616 .. 1195930

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGATCTTGGCCAGCTCCTCAGGCACCATCCAGACTCCACGTACCTCTTTAAGAAGACAGACGAAGGTATTCCTTGACCCTTTGATTTCTTGGTCAAGTTCACTCTGTATGTTTTCCCAGTCTATGAGCGTGTGGATTCCGGCATTGTGTAACGCAATGGAGAGGTGGTCAGTGAAGGTAGTGCGTGTGTTGTCGCCTCTAAAGCTCAGGAACACCTCGTACTTCCAGCGATTTGAGTGGCATAGGGAAGATGAAGAGGCTGCGACGGCGGTTCCATGGGCGGAGCTGATGGTATCCATTGATAATTGGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

105

Amino Acids

12.1

Weight (kDa)

8.77

Isoelectric Point (pI)

55.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020363)

Species	Orthologous Gene IDs
malus_domestica	MD04G1055000.v1.1 MD09G1251400.v1.1
pyrus_communis	pycom111g02010
rosa_chinensis	RchiOBHm_Chr1g0365631 RchiOBHm_Chr5g0039661
rosa_multiflora	Rmu_sc0002587.1_g000045

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AciI	CCGC	2 cut(s)	269, 281
AcoI	YGGCCR	1 cut(s)	9
AfaI	GTAC	3 cut(s)	43, 221, 311
AluBI	AGCT	3 cut(s)	15, 205, 286
AluI	AGCT	3 cut(s)	15, 205, 286
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	68
AxyI	CCTNAGG	1 cut(s)	19
BalI	TGGCCA	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	2 cut(s)	35, 283
BceAI	ACGGC	1 cut(s)	282
BciVI	GTATCC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	313
BfuI	GTATCC	1 cut(s)	304
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
BmiI	GGNNCC	2 cut(s)	25, 273
BmrI	ACTGGG	1 cut(s)	112
BmuI	ACTGGG	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	61
Bpu10I	CCTNAGC	1 cut(s)	206
BsaAI	YACGTR	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bse1I	ACTGG	1 cut(s)	118
Bse21I	CCTNAGG	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	1 cut(s)	27
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	2 cut(s)	33, 220
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	1 cut(s)	247
BshFI	GGCC	1 cut(s)	11
BshNI	GGYRCC	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	140
BsnI	GGCC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	3
Bsp19I	CCATGG	1 cut(s)	275
BspACI	CCGC	2 cut(s)	269, 281
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	2 cut(s)	32, 219
BspLI	GGNNCC	2 cut(s)	25, 273
BspT107I	GGYRCC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	2 cut(s)	19, 206
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	27
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 202, 266
BstV1I	GCAGC	1 cut(s)	247
BstV2I	GAAGAC	1 cut(s)	61
Bsu36I	CCTNAGG	1 cut(s)	19
BsuI	GTATCC	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	13
Csp6I	GTAC	3 cut(s)	42, 220, 310
CviAII	CATG	1 cut(s)	276
CviJI	RGCY	5 cut(s)	11, 15, 205, 260, 286
CviKI_1	RGCY	5 cut(s)	11, 15, 205, 260, 286
CviQI	GTAC	3 cut(s)	42, 220, 310
DdeI	CTNAG	2 cut(s)	19, 206
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
EciI	GGCGGA	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	275
Eco81I	CCTNAGG	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	275
FaeI	CATG	1 cut(s)	279
FaiI	YATR	4 cut(s)	110, 125, 243, 277
FatI	CATG	1 cut(s)	275
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	1 cut(s)	313
GluI	GCNGC	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	1 cut(s)	140
Hin1II	CATG	1 cut(s)	279
HinfI	GANTC	2 cut(s)	34, 136
HpaII	CCGG	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188III	TCNNGA	2 cut(s)	31, 208
Hpy8I	GTNNAC	1 cut(s)	101
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	58, 169
HpyCH4IV	ACGT	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 202, 266
HpyF3I	CTNAG	2 cut(s)	19, 206
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	20, 283
LpnPI	CCDG	7 cut(s)	6, 25, 44, 131, 153, 193, 239
Lsp1109I	GCAGC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	313
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	66, 260, 266
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	1 cut(s)	304
MluNI	TGGCCA	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	6 cut(s)	28, 55, 156, 207, 226, 250
Mox20I	TGGCCA	1 cut(s)	11
MroXI	GAANNNNTTC	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	11
MspI	CCGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	3 cut(s)	21, 202, 266
NcoI	CCATGG	1 cut(s)	275
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	279
NlaIV	GGNNCC	2 cut(s)	25, 273
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
Ppu21I	YACGTR	1 cut(s)	41
PspN4I	GGNNCC	2 cut(s)	25, 273
PsrI	GAACNNNNNNTAC	2 cut(s)	203, 235
RsaI	GTAC	3 cut(s)	43, 221, 311
RsaNI	GTAC	3 cut(s)	42, 220, 310
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	1 cut(s)	28
SetI	ASST	9 cut(s)	17, 43, 47, 69, 167, 180, 207, 218, 288
Sse9I	AATT	1 cut(s)	304
SsiI	CCGC	2 cut(s)	269, 281
SspMI	CTAG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	275
TaiI	ACGT	1 cut(s)	43
TasI	AATT	1 cut(s)	304
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	1 cut(s)	177
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.