Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0021158

Physical Location & Seq

Genomic Coordinates Reverse (-)

33553550 .. 33557638

Gene Structure 4089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1262200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGAGGCTTCCGATTCCAATCTCTCTCAGCTCCAATTGCAGCTCTCGAACCAACCTCCGCCACAAAATCCGACACCGGTTCATCACCAATTTCTCAACCCAGCTCCGGTCCAGGACCAAGTTCCGGCTCAGCATCCGGCTTCCTCTGCTTCTCCATCAGCTTCTTCTGCTTCTGCATCAGCTTCCTCTTCTAAGAGCCTACCAGATCACTTGACGCACAAAAATCGACTGCAAGAATATGCCCAGGGAGCAGGCCTCCCGCTTCCGGTTTATCAGACTGTCAATGAAGGAAATCGACATGCACCATCAACTTTTAGGTCGTCTGTGTTGGTGGATGGAGTTTGCTATGCTTCATCCAACACATTTGCTAGTCGAAAAGCTGCTGAGCAAGATGCTGCTAGACTAGCCATGATCAGTATAACAGAGAAGATAAAGGATGAAGTTCCTACTATTCCTCCTGTTCACGAGGATCTGGTGTTTTGCAAGAGTATCCTGAATGAATATAATATGAAAAGGAAAATAGAACCACCTACTTACCAGACTTTTCAGGGAAATGCGAAGGTTCCTTTTTTTGTATCTTCTTTGGTTGTCAACGGTGTGTCCTATACTGGGGATGTTGGAAAAAGCAAGAAAGAGGCTGAACAGTTAGCAGCTCGTGTTGTTATTCAATCACTTCTAGGTGATTCTGAATCAGCACCCATTATGTCCGAGATCCTTAGATCTAAATACAAACTTGCACATAAGAGCAAGGAGCCAGACTCTTCACATGCCAATCTTGCAACTTCAGCAGTAAACACAGGACAAGGTTATGTGATCTCAACTGACACTCCAGTAGTCGTTGCACCTGAGGCATCTTTGGGAATGCATCCGCCACGCCATGAATTTATCAAACGGAAGCAAGAGGAACCAGCTTCTCAAGCACCCCCCCAGCTTCCCATAGCTTTTGTTCCTCCAGCTTGTAAGCAGCCCCTAGTTGTTGTTTCAACTTCCTTGGCCACAACCCCAACTTCCTTGGCCCCTGCCTCAACTTCCTTGGCCCCTGCCTCAGCTTCCTTGGCCCCTGCCTCAGCTTCCTTGGCCCCTGCGTCAACTTCCTTGACTCCTGCTCCCACTTCCTTGGGCCCTGCTCCAACTTTTTGGGCTGTTCTTCCAGCTTCCAAAAAGCGGCGGAAGAACAAGAAGTCTGAAACAAACTTGCAGAATGATAATCAGTTGCCAGCTGGTACCTTGAACTTGAATCAACCAGCATCTTGTGCAGCTTCGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0032296 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dsrm

Protein Analysis

423

Amino Acids

44.6

Weight (kDa)

8.89

Isoelectric Point (pI)

66.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dsrm	PF00035	74 - 137	2.6e-10	Double-stranded RNA binding motif
dsrm	PF00035	162 - 225	5e-12	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021158)

Species	Orthologous Gene IDs
malus_domestica	MD09G1262200.v1.1 MD17G1257100.v1.1
pyrus_communis	pycom09g17660 pycom17g25940
rosa_samantha	Rh3DG304200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1223
AccB1I	GGYRCC	1 cut(s)	1223
AciI	CCGC	5 cut(s)	59, 260, 869, 1165, 1168
AclWI	GGATC	2 cut(s)	477, 706
AcoI	YGGCCR	1 cut(s)	993
AcsI	RAATTY	1 cut(s)	881
AcuI	CTGAAG	1 cut(s)	768
AfaI	GTAC	1 cut(s)	1225
AfiI	CCNNNNNNNGG	5 cut(s)	106, 124, 265, 609, 1164
AgeI	ACCGGT	1 cut(s)	76
AgsI	TTSAA	4 cut(s)	668, 984, 1231, 1237
AjnI	CCWGG	2 cut(s)	111, 243
AlwI	GGATC	2 cut(s)	477, 706
AoxI	GGCC	7 cut(s)	253, 993, 1014, 1035, 1056, 1077, 1120
ApaI	GGGCCC	1 cut(s)	1124
ApeKI	GCWGC	6 cut(s)	40, 380, 395, 650, 964, 1256
ApoI	RAATTY	1 cut(s)	881
AsiGI	ACCGGT	1 cut(s)	76
Asp718I	GGTACC	1 cut(s)	1223
AspS9I	GGNCC	8 cut(s)	109, 115, 1015, 1036, 1057, 1078, 1120, 1121
AsuHPI	GGTGA	2 cut(s)	77, 692
AvaII	GGWCC	2 cut(s)	109, 115
AxyI	CCTNAGG	1 cut(s)	846
BaeGI	GKGCMC	1 cut(s)	1124
BalI	TGGCCA	1 cut(s)	995
BanI	GGYRCC	1 cut(s)	1223
BanII	GRGCYC	1 cut(s)	1124
BauI	CACGAG	2 cut(s)	464, 654
BbvCI	CCTCAGC	2 cut(s)	1045, 1066
BbvI	GCAGC	5 cut(s)	52, 367, 382, 662, 976
BccI	CCATC	3 cut(s)	163, 313, 329
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	2 cut(s)	113, 245
BciVI	GTATCC	1 cut(s)	500
BclI	TGATCA	1 cut(s)	411
BfaI	CTAG	5 cut(s)	369, 399, 404, 677, 971
BfuI	GTATCC	1 cut(s)	500
BglII	AGATCT	1 cut(s)	719
BisI	GCNGC	7 cut(s)	41, 381, 396, 651, 965, 1166, 1257
BlpI	GCTNAGC	2 cut(s)	129, 384
BlsI	GCNGC	7 cut(s)	42, 382, 397, 652, 966, 1167, 1258
Bme1390I	CCNGG	2 cut(s)	113, 245
Bme18I	GGWCC	2 cut(s)	109, 115
BmgT120I	GGNCC	8 cut(s)	109, 115, 1015, 1036, 1057, 1078, 1120, 1121
BmiI	GGNNCC	9 cut(s)	564, 753, 906, 1017, 1038, 1059, 1080, 1122, 1225
BmrFI	CCNGG	2 cut(s)	113, 245
BmrI	ACTGGG	1 cut(s)	618
BmsI	GCATC	6 cut(s)	142, 185, 382, 860, 874, 1256
BmuI	ACTGGG	1 cut(s)	618
BplI	GAGNNNNNCTC	4 cut(s)	240, 272, 743, 775
BpmI	CTGGAG	2 cut(s)	813, 936
Bpu10I	CCTNAGC	2 cut(s)	1045, 1066
Bpu1102I	GCTNAGC	2 cut(s)	129, 384
BpuEI	CTTGAG	1 cut(s)	900
BsaBI	GATNNNNATC	1 cut(s)	18
BsaJI	CCNNGG	8 cut(s)	243, 244, 990, 1011, 1032, 1053, 1074, 1116
BsaWI	WCCGGW	3 cut(s)	76, 106, 265
BsaXI	ACNNNNNCTCC	6 cut(s)	439, 469, 811, 841, 1090, 1120
Bsc4I	CCNNNNNNNGG	5 cut(s)	106, 124, 265, 609, 1164
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	613, 830
Bse21I	CCTNAGG	1 cut(s)	846
Bse8I	GATNNNNATC	1 cut(s)	18
BseBI	CCWGG	2 cut(s)	113, 245
BseDI	CCNNGG	8 cut(s)	243, 244, 990, 1011, 1032, 1053, 1074, 1116
BseGI	GGATG	6 cut(s)	133, 340, 353, 442, 619, 865
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	5 cut(s)	106, 124, 265, 609, 1164
BseMII	CTCAG	6 cut(s)	41, 143, 375, 837, 1059, 1080
BseNI	ACTGG	2 cut(s)	613, 830
BseSI	GKGCMC	1 cut(s)	1124
BseXI	GCAGC	5 cut(s)	52, 367, 382, 662, 976
BseYI	CCCAGC	2 cut(s)	100, 927
BshFI	GGCC	7 cut(s)	255, 995, 1016, 1037, 1058, 1079, 1122
BshNI	GGYRCC	1 cut(s)	1223
BshTI	ACCGGT	1 cut(s)	76
BsiSI	CCGG	5 cut(s)	77, 107, 125, 137, 266
BslI	CCNNNNNNNGG	5 cut(s)	106, 124, 265, 609, 1164
BsmI	GAATGC	1 cut(s)	867
BsnI	GGCC	7 cut(s)	255, 995, 1016, 1037, 1058, 1079, 1122
Bsp120I	GGGCCC	1 cut(s)	1120
Bsp1286I	GDGCHC	1 cut(s)	1124
Bsp143I	GATC	6 cut(s)	205, 411, 469, 711, 719, 813
Bsp1720I	GCTNAGC	2 cut(s)	129, 384
BspACI	CCGC	5 cut(s)	59, 260, 869, 1165, 1168
BspANI	GGCC	7 cut(s)	255, 995, 1016, 1037, 1058, 1079, 1122
BspCNI	CTCAG	6 cut(s)	40, 142, 376, 838, 1058, 1079
BspLI	GGNNCC	9 cut(s)	564, 753, 906, 1017, 1038, 1059, 1080, 1122, 1225
BspPI	GGATC	2 cut(s)	477, 706
BspT107I	GGYRCC	1 cut(s)	1223
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	613, 830
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	8 cut(s)	243, 244, 990, 1011, 1032, 1053, 1074, 1116
BssMI	GATC	6 cut(s)	205, 411, 469, 711, 719, 813
BssSI	CACGAG	2 cut(s)	464, 654
BssT1I	CCWWGG	6 cut(s)	990, 1011, 1032, 1053, 1074, 1116
Bst2BI	CACGAG	2 cut(s)	464, 654
Bst2UI	CCWGG	2 cut(s)	113, 245
Bst4CI	ACNGT	3 cut(s)	280, 596, 645
Bst6I	CTCTTC	2 cut(s)	193, 766
BstAPI	GCANNNNNTGC	1 cut(s)	1253
BstC8I	GCNNGC	2 cut(s)	253, 1218
BstDEI	CTNAG	8 cut(s)	27, 129, 192, 384, 716, 846, 1045, 1066
BstF5I	GGATG	6 cut(s)	133, 340, 353, 442, 619, 865
BstKTI	GATC	6 cut(s)	208, 414, 472, 714, 722, 816
BstMBI	GATC	6 cut(s)	205, 411, 469, 711, 719, 813
BstNI	CCWGG	2 cut(s)	113, 245
BstNSI	RCATGY	2 cut(s)	302, 770
BstSCI	CCNGG	2 cut(s)	111, 243
BstSLI	GKGCMC	1 cut(s)	1124
BstV1I	GCAGC	5 cut(s)	52, 367, 382, 662, 976
BstX2I	RGATCY	3 cut(s)	469, 711, 719
BstXI	CCANNNNNNTGG	2 cut(s)	1117, 1137
BstYI	RGATCY	3 cut(s)	469, 711, 719
Bsu36I	CCTNAGG	1 cut(s)	846
BsuI	GTATCC	1 cut(s)	500
BsuRI	GGCC	7 cut(s)	255, 995, 1016, 1037, 1058, 1079, 1122
BtsCI	GGATG	6 cut(s)	133, 340, 353, 442, 619, 865
Cac8I	GCNNGC	2 cut(s)	253, 1218
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	8 cut(s)	109, 115, 1015, 1036, 1057, 1078, 1120, 1121
CseI	GACGC	2 cut(s)	223, 1074
Csp6I	GTAC	1 cut(s)	1224
CspAI	ACCGGT	1 cut(s)	76
CviAII	CATG	4 cut(s)	299, 409, 767, 878
CviQI	GTAC	1 cut(s)	1224
DdeI	CTNAG	8 cut(s)	27, 129, 192, 384, 716, 846, 1045, 1066
DpnI	GATC	6 cut(s)	207, 413, 471, 713, 721, 815
DpnII	GATC	6 cut(s)	205, 411, 469, 711, 719, 813
EaeI	YGGCCR	1 cut(s)	993
Eam1104I	CTCTTC	2 cut(s)	193, 766
EarI	CTCTTC	2 cut(s)	193, 766
EciI	GGCGGA	3 cut(s)	48, 858, 1183
Eco130I	CCWWGG	6 cut(s)	990, 1011, 1032, 1053, 1074, 1116
Eco147I	AGGCCT	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	1124
Eco47I	GGWCC	2 cut(s)	109, 115
Eco57I	CTGAAG	1 cut(s)	768
Eco81I	CCTNAGG	1 cut(s)	846
EcoO109I	RGGNCCY	1 cut(s)	1121
EcoRII	CCWGG	2 cut(s)	111, 243
EcoT14I	CCWWGG	6 cut(s)	990, 1011, 1032, 1053, 1074, 1116
EcoT22I	ATGCAT	1 cut(s)	867
EcoT38I	GRGCYC	1 cut(s)	1124
ErhI	CCWWGG	6 cut(s)	990, 1011, 1032, 1053, 1074, 1116
FaeI	CATG	4 cut(s)	302, 412, 770, 881
FatI	CATG	4 cut(s)	298, 408, 766, 877
FauI	CCCGC	1 cut(s)	267
FbaI	TGATCA	1 cut(s)	411
Fnu4HI	GCNGC	7 cut(s)	41, 381, 396, 651, 965, 1166, 1257
FokI	GGATG	6 cut(s)	120, 340, 347, 449, 626, 852
FriOI	GRGCYC	1 cut(s)	1124
Fsp4HI	GCNGC	7 cut(s)	41, 381, 396, 651, 965, 1166, 1257
FspBI	CTAG	5 cut(s)	369, 399, 404, 677, 971
GluI	GCNGC	7 cut(s)	41, 381, 396, 651, 965, 1166, 1257
GsaI	CCCAGC	2 cut(s)	104, 931
GsuI	CTGGAG	2 cut(s)	813, 936
HaeIII	GGCC	7 cut(s)	255, 995, 1016, 1037, 1058, 1079, 1122
HapII	CCGG	5 cut(s)	77, 107, 125, 137, 266
HgaI	GACGC	2 cut(s)	223, 1074
Hin1II	CATG	4 cut(s)	302, 412, 770, 881
HincII	GTYRAC	2 cut(s)	592, 1089
HindII	GTYRAC	2 cut(s)	592, 1089
HinfI	GANTC	6 cut(s)	14, 683, 689, 758, 1099, 1237
HpaII	CCGG	5 cut(s)	77, 107, 125, 137, 266
HphI	GGTGA	2 cut(s)	77, 692
Hpy166II	GTNNAC	4 cut(s)	463, 592, 793, 1089
Hpy188I	TCNGA	6 cut(s)	13, 72, 276, 688, 709, 1186
Hpy188III	TCNNGA	3 cut(s)	46, 464, 493
Hpy8I	GTNNAC	4 cut(s)	463, 592, 793, 1089
HpyAV	CCTTC	2 cut(s)	281, 553
HpyCH4III	ACNGT	3 cut(s)	280, 596, 645
HpyF3I	CTNAG	8 cut(s)	27, 129, 192, 384, 716, 846, 1045, 1066
Hsp92II	CATG	4 cut(s)	302, 412, 770, 881
KpnI	GGTACC	1 cut(s)	1227
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	6 cut(s)	205, 411, 469, 711, 719, 813
LmnI	GCTCC	6 cut(s)	36, 109, 248, 751, 1111, 1132
Lsp1109I	GCAGC	5 cut(s)	52, 367, 382, 662, 976
LweI	GCATC	6 cut(s)	142, 185, 382, 860, 874, 1256
MaeI	CTAG	5 cut(s)	369, 399, 404, 677, 971
MalI	GATC	6 cut(s)	207, 413, 471, 713, 721, 815
MboI	GATC	6 cut(s)	205, 411, 469, 711, 719, 813
MboII	GAAGA	7 cut(s)	156, 180, 439, 570, 753, 1139, 1183
MfeI	CAATTG	1 cut(s)	35
MflI	RGATCY	3 cut(s)	469, 711, 719
MhlI	GDGCHC	1 cut(s)	1124
MlsI	TGGCCA	1 cut(s)	995
MluCI	AATT	3 cut(s)	35, 89, 881
MluNI	TGGCCA	1 cut(s)	995
MlyI	GAGTC	2 cut(s)	752, 1093
MmeI	TCCRAC	4 cut(s)	95, 381, 598, 1154
Mox20I	TGGCCA	1 cut(s)	995
Mph1103I	ATGCAT	1 cut(s)	867
MscI	TGGCCA	1 cut(s)	995
Msp20I	TGGCCA	1 cut(s)	995
MspA1I	CMGCKG	1 cut(s)	1220
MspI	CCGG	5 cut(s)	77, 107, 125, 137, 266
MspR9I	CCNGG	2 cut(s)	113, 245
MunI	CAATTG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	867
MvaI	CCWGG	2 cut(s)	113, 245
NdeII	GATC	6 cut(s)	205, 411, 469, 711, 719, 813
NlaIII	CATG	4 cut(s)	302, 412, 770, 881
NlaIV	GGNNCC	9 cut(s)	564, 753, 906, 1017, 1038, 1059, 1080, 1122, 1225
NsiI	ATGCAT	1 cut(s)	867
NspI	RCATGY	2 cut(s)	302, 770
PasI	CCCWGGG	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	255
PctI	GAATGC	1 cut(s)	867
PfeI	GAWTC	4 cut(s)	14, 683, 689, 1237
PfoI	TCCNGGA	1 cut(s)	111
PinAI	ACCGGT	1 cut(s)	76
PkrI	GCNGC	7 cut(s)	42, 382, 397, 652, 966, 1167, 1258
PleI	GAGTC	2 cut(s)	752, 1093
PpsI	GAGTC	2 cut(s)	752, 1093
Psp6I	CCWGG	2 cut(s)	111, 243
PspFI	CCCAGC	2 cut(s)	100, 927
PspGI	CCWGG	2 cut(s)	111, 243
PspN4I	GGNNCC	9 cut(s)	564, 753, 906, 1017, 1038, 1059, 1080, 1122, 1225
PspOMI	GGGCCC	1 cut(s)	1120
PspPI	GGNCC	8 cut(s)	109, 115, 1015, 1036, 1057, 1078, 1120, 1121
PsuI	RGATCY	3 cut(s)	469, 711, 719
PvuII	CAGCTG	1 cut(s)	1220
RsaI	GTAC	1 cut(s)	1225
RsaNI	GTAC	1 cut(s)	1224
SatI	GCNGC	7 cut(s)	41, 381, 396, 651, 965, 1166, 1257
Sau3AI	GATC	6 cut(s)	205, 411, 469, 711, 719, 813
Sau96I	GGNCC	8 cut(s)	109, 115, 1015, 1036, 1057, 1078, 1120, 1121
SchI	GAGTC	2 cut(s)	752, 1093
ScrFI	CCNGG	2 cut(s)	113, 245
SduI	GDGCHC	1 cut(s)	1124
SfaNI	GCATC	6 cut(s)	142, 185, 382, 860, 874, 1256
SinI	GGWCC	2 cut(s)	109, 115
SmlI	CTYRAG	1 cut(s)	915
SmoI	CTYRAG	1 cut(s)	915
Sse9I	AATT	3 cut(s)	35, 89, 881
SseBI	AGGCCT	1 cut(s)	255
SsiI	CCGC	5 cut(s)	59, 260, 869, 1165, 1168
SspMI	CTAG	5 cut(s)	369, 399, 404, 677, 971
StuI	AGGCCT	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	111, 243
StyI	CCWWGG	6 cut(s)	990, 1011, 1032, 1053, 1074, 1116
TaaI	ACNGT	3 cut(s)	280, 596, 645
TaqI	TCGA	4 cut(s)	47, 226, 295, 373
TasI	AATT	3 cut(s)	35, 89, 881
TauI	GCSGC	1 cut(s)	1168
TfiI	GAWTC	4 cut(s)	14, 683, 689, 1237
TseI	GCWGC	6 cut(s)	40, 380, 395, 650, 964, 1256
TspDTI	ATGAA	7 cut(s)	71, 300, 342, 453, 513, 524, 894
TspGWI	ACGGA	1 cut(s)	907
VpaK11BI	GGWCC	2 cut(s)	109, 115
XapI	RAATTY	1 cut(s)	881
XceI	RCATGY	2 cut(s)	302, 770
XspI	CTAG	5 cut(s)	369, 399, 404, 677, 971
Zsp2I	ATGCAT	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.