Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0021158

Physical Location & Seq

Genomic Coordinates Reverse (-)

18188753 .. 18191469

Gene Structure 2717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGAGGCTTCCGATTCCAATCTCTCTCAGCTCCAATTGCAGCTCTCGAACCAACCTCCACCACAAAATCCGACACCGGTTCATCACCAATTTCTCAGCCCAGCTCCGGTTCCGGCTCAGCATCCGGCTTCCTCTGCTTCTCCATCAGCTTCTTCTGCTTCTGCATCAGCTTCTTCTTCTAAGAGCCTACCAGATCACTTGACGCACAAAAATCGACTGCAAGAATATGCCCAGGGAGCAGGCCTCCCACTTCCGGTTTATCAGACTGTCAATGAAGGAAATCGACATGCACCATCAACTTTTAGGTCGTCCGTGTTGGTGGATGGAGTTTGCTATGCTTCATCCAACACATTTGCTAGTCGAAAAGCTGCTGAGCAAGATGCTGCTAGACTGGCCATGATCAGTATAACAGAGAAGATAAAGGAAGAAGTTCCTACTATTCCTCCTATTCATGAGGATCTGGTGTTTTGCAAGAGTATCCTGAATGAATATAATATGAAAAGGAAAATAGAACCACCTACTTACCAGACTTTTCAGGGAAATGCGAAGGTTCCTTTCTTTGTATCTTCTTTGGTTGTCAACGGTGTGTCCTATACTGGGGATGTTGGAAAAAGCAAGAAAGAGGCTGAACAGTTGGCAGCTCGTGTTGTTATTCAATCACTTCTAGGTGATTCCGAATCAGCACCCATTATGTCGGAGATCCTTAGGTCTAAATACAAACTTGCACATAAGAGCAAGGAGCCAGACTCTTCACATGCCAGTCTTGCAACTTCAGCAGTAAACACAGGACAAGGTTATGTGATCTCAACTGACACTCCAGTAGTCGTTGCACCTGAGGCATCTTTGGGAATGCATCCGCCACGCCATGAATTTATCAAACGGAAGCAAGAGGAACCAGCTTCTCAAGCACCCCCTCAGCTTCCCATAGCTTTTGTTCCTCCAGCTTGTAAGCAGCCCCTAGTTGTTGTTTCAACTTCCCTGGCCACAACCCCAACTTCCTTGGCCCCTGCCTCAACTTCCTTGGCCCCTGCCTCACTTCCTTGGCCCCTGCCTCAGCTTCCTTGGCCCCTGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0032296 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dsrm

Protein Analysis

359

Amino Acids

38.23

Weight (kDa)

7.77

Isoelectric Point (pI)

68.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dsrm	PF00035	70 - 133	2e-10	Double-stranded RNA binding motif
dsrm	PF00035	158 - 221	3.8e-12	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021158)

Species	Orthologous Gene IDs
malus_domestica	MD09G1262200.v1.1 MD17G1257100.v1.1
pyrus_communis	pycom09g17660 pycom17g25940
rosa_samantha	Rh3DG304200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	857
AclWI	GGATC	2 cut(s)	465, 694
AcoI	YGGCCR	2 cut(s)	393, 981
AcsI	RAATTY	1 cut(s)	869
AcuI	CTGAAG	1 cut(s)	756
AfiI	CCNNNNNNNGG	3 cut(s)	106, 253, 597
AgeI	ACCGGT	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	656, 972
AjnI	CCWGG	2 cut(s)	231, 978
AlwI	GGATC	2 cut(s)	465, 694
AoxI	GGCC	7 cut(s)	241, 393, 981, 1002, 1023, 1043, 1064
ApeKI	GCWGC	5 cut(s)	40, 368, 383, 638, 952
ApoI	RAATTY	1 cut(s)	869
AsiGI	ACCGGT	1 cut(s)	76
Asp700I	GAANNNNTTC	1 cut(s)	429
AspS9I	GGNCC	4 cut(s)	1003, 1024, 1044, 1065
AsuHPI	GGTGA	2 cut(s)	77, 680
AxyI	CCTNAGG	2 cut(s)	704, 834
BalI	TGGCCA	2 cut(s)	395, 983
BauI	CACGAG	1 cut(s)	642
BbvCI	CCTCAGC	2 cut(s)	915, 1053
BbvI	GCAGC	5 cut(s)	52, 355, 370, 650, 964
BccI	CCATC	3 cut(s)	151, 301, 317
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	2 cut(s)	233, 980
BciVI	GTATCC	1 cut(s)	488
BclI	TGATCA	1 cut(s)	399
BfaI	CTAG	4 cut(s)	357, 387, 665, 959
BfuI	GTATCC	1 cut(s)	488
BisI	GCNGC	5 cut(s)	41, 369, 384, 639, 953
BlpI	GCTNAGC	2 cut(s)	117, 372
BlsI	GCNGC	5 cut(s)	42, 370, 385, 640, 954
Bme1390I	CCNGG	2 cut(s)	233, 980
BmgT120I	GGNCC	4 cut(s)	1003, 1024, 1044, 1065
BmiI	GGNNCC	8 cut(s)	111, 552, 741, 894, 1005, 1026, 1046, 1067
BmrFI	CCNGG	2 cut(s)	233, 980
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	5 cut(s)	130, 173, 370, 848, 862
BmuI	ACTGGG	1 cut(s)	606
BplI	GAGNNNNNCTC	4 cut(s)	228, 260, 731, 763
BpmI	CTGGAG	2 cut(s)	801, 924
Bpu10I	CCTNAGC	2 cut(s)	915, 1053
Bpu1102I	GCTNAGC	2 cut(s)	117, 372
BpuEI	CTTGAG	1 cut(s)	888
BsaBI	GATNNNNATC	1 cut(s)	18
BsaJI	CCNNGG	7 cut(s)	231, 232, 978, 999, 1020, 1040, 1061
BsaWI	WCCGGW	3 cut(s)	76, 106, 253
BsaXI	ACNNNNNCTCC	4 cut(s)	427, 457, 799, 829
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 253, 597
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	4 cut(s)	396, 601, 759, 818
Bse21I	CCTNAGG	2 cut(s)	704, 834
Bse8I	GATNNNNATC	1 cut(s)	18
BseBI	CCWGG	2 cut(s)	233, 980
BseDI	CCNNGG	7 cut(s)	231, 232, 978, 999, 1020, 1040, 1061
BseGI	GGATG	5 cut(s)	121, 328, 341, 607, 853
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	3 cut(s)	106, 253, 597
BseMII	CTCAG	7 cut(s)	41, 109, 131, 363, 825, 929, 1067
BseNI	ACTGG	4 cut(s)	396, 601, 759, 818
BseXI	GCAGC	5 cut(s)	52, 355, 370, 650, 964
BseYI	CCCAGC	1 cut(s)	100
BshFI	GGCC	7 cut(s)	243, 395, 983, 1004, 1025, 1045, 1066
BshTI	ACCGGT	1 cut(s)	76
BsiSI	CCGG	5 cut(s)	77, 107, 113, 125, 254
BslI	CCNNNNNNNGG	3 cut(s)	106, 253, 597
BsmI	GAATGC	1 cut(s)	855
BsnI	GGCC	7 cut(s)	243, 395, 983, 1004, 1025, 1045, 1066
Bsp143I	GATC	5 cut(s)	193, 399, 457, 699, 801
Bsp1720I	GCTNAGC	2 cut(s)	117, 372
BspACI	CCGC	1 cut(s)	857
BspANI	GGCC	7 cut(s)	243, 395, 983, 1004, 1025, 1045, 1066
BspCNI	CTCAG	7 cut(s)	40, 108, 130, 364, 826, 928, 1066
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	8 cut(s)	111, 552, 741, 894, 1005, 1026, 1046, 1067
BspPI	GGATC	2 cut(s)	465, 694
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	4 cut(s)	396, 601, 759, 818
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	7 cut(s)	231, 232, 978, 999, 1020, 1040, 1061
BssMI	GATC	5 cut(s)	193, 399, 457, 699, 801
BssSI	CACGAG	1 cut(s)	642
BssT1I	CCWWGG	4 cut(s)	999, 1020, 1040, 1061
Bst2BI	CACGAG	1 cut(s)	642
Bst2UI	CCWGG	2 cut(s)	233, 980
Bst4CI	ACNGT	3 cut(s)	268, 584, 633
Bst6I	CTCTTC	1 cut(s)	754
BstC8I	GCNNGC	1 cut(s)	241
BstF5I	GGATG	5 cut(s)	121, 328, 341, 607, 853
BstKTI	GATC	5 cut(s)	196, 402, 460, 702, 804
BstMBI	GATC	5 cut(s)	193, 399, 457, 699, 801
BstNI	CCWGG	2 cut(s)	233, 980
BstNSI	RCATGY	2 cut(s)	290, 758
BstSCI	CCNGG	2 cut(s)	231, 978
BstV1I	GCAGC	5 cut(s)	52, 355, 370, 650, 964
BstX2I	RGATCY	2 cut(s)	457, 699
BstYI	RGATCY	2 cut(s)	457, 699
Bsu36I	CCTNAGG	2 cut(s)	704, 834
BsuI	GTATCC	1 cut(s)	488
BsuRI	GGCC	7 cut(s)	243, 395, 983, 1004, 1025, 1045, 1066
BtsCI	GGATG	5 cut(s)	121, 328, 341, 607, 853
Cac8I	GCNNGC	1 cut(s)	241
CciI	TCATGA	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	4 cut(s)	1003, 1024, 1044, 1065
CseI	GACGC	1 cut(s)	211
CspAI	ACCGGT	1 cut(s)	76
CviAII	CATG	5 cut(s)	287, 397, 452, 755, 866
DpnI	GATC	5 cut(s)	195, 401, 459, 701, 803
DpnII	GATC	5 cut(s)	193, 399, 457, 699, 801
EaeI	YGGCCR	2 cut(s)	393, 981
Eam1104I	CTCTTC	1 cut(s)	754
EarI	CTCTTC	1 cut(s)	754
EciI	GGCGGA	1 cut(s)	846
Eco130I	CCWWGG	4 cut(s)	999, 1020, 1040, 1061
Eco147I	AGGCCT	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	756
Eco81I	CCTNAGG	2 cut(s)	704, 834
EcoRII	CCWGG	2 cut(s)	231, 978
EcoT14I	CCWWGG	4 cut(s)	999, 1020, 1040, 1061
EcoT22I	ATGCAT	1 cut(s)	855
ErhI	CCWWGG	4 cut(s)	999, 1020, 1040, 1061
FaeI	CATG	5 cut(s)	290, 400, 455, 758, 869
FatI	CATG	5 cut(s)	286, 396, 451, 754, 865
FbaI	TGATCA	1 cut(s)	399
Fnu4HI	GCNGC	5 cut(s)	41, 369, 384, 639, 953
FokI	GGATG	5 cut(s)	108, 328, 335, 614, 840
Fsp4HI	GCNGC	5 cut(s)	41, 369, 384, 639, 953
FspBI	CTAG	4 cut(s)	357, 387, 665, 959
GluI	GCNGC	5 cut(s)	41, 369, 384, 639, 953
GsaI	CCCAGC	1 cut(s)	104
GsuI	CTGGAG	2 cut(s)	801, 924
HaeIII	GGCC	7 cut(s)	243, 395, 983, 1004, 1025, 1045, 1066
HapII	CCGG	5 cut(s)	77, 107, 113, 125, 254
HgaI	GACGC	1 cut(s)	211
Hin1II	CATG	5 cut(s)	290, 400, 455, 758, 869
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HinfI	GANTC	4 cut(s)	14, 671, 677, 746
HpaII	CCGG	5 cut(s)	77, 107, 113, 125, 254
HphI	GGTGA	2 cut(s)	77, 680
Hpy166II	GTNNAC	2 cut(s)	580, 781
Hpy188I	TCNGA	5 cut(s)	13, 72, 264, 676, 697
Hpy188III	TCNNGA	3 cut(s)	46, 452, 481
Hpy8I	GTNNAC	2 cut(s)	580, 781
HpyAV	CCTTC	2 cut(s)	269, 541
HpyCH4III	ACNGT	3 cut(s)	268, 584, 633
HpyCH4V	TGCA	9 cut(s)	40, 164, 220, 290, 471, 725, 767, 830, 853
Hsp92II	CATG	5 cut(s)	290, 400, 455, 758, 869
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	5 cut(s)	193, 399, 457, 699, 801
LmnI	GCTCC	4 cut(s)	36, 109, 236, 739
Lsp1109I	GCAGC	5 cut(s)	52, 355, 370, 650, 964
LweI	GCATC	5 cut(s)	130, 173, 370, 848, 862
MaeI	CTAG	4 cut(s)	357, 387, 665, 959
MalI	GATC	5 cut(s)	195, 401, 459, 701, 803
MboI	GATC	5 cut(s)	193, 399, 457, 699, 801
MboII	GAAGA	7 cut(s)	144, 165, 168, 427, 437, 558, 741
MfeI	CAATTG	1 cut(s)	35
MflI	RGATCY	2 cut(s)	457, 699
MlsI	TGGCCA	2 cut(s)	395, 983
MluCI	AATT	3 cut(s)	35, 89, 869
MluNI	TGGCCA	2 cut(s)	395, 983
MlyI	GAGTC	1 cut(s)	740
MmeI	TCCRAC	4 cut(s)	95, 369, 586, 675
Mox20I	TGGCCA	2 cut(s)	395, 983
Mph1103I	ATGCAT	1 cut(s)	855
MroXI	GAANNNNTTC	1 cut(s)	429
MscI	TGGCCA	2 cut(s)	395, 983
Msp20I	TGGCCA	2 cut(s)	395, 983
MspI	CCGG	5 cut(s)	77, 107, 113, 125, 254
MspR9I	CCNGG	2 cut(s)	233, 980
MunI	CAATTG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	855
MvaI	CCWGG	2 cut(s)	233, 980
NdeII	GATC	5 cut(s)	193, 399, 457, 699, 801
NlaIII	CATG	5 cut(s)	290, 400, 455, 758, 869
NlaIV	GGNNCC	8 cut(s)	111, 552, 741, 894, 1005, 1026, 1046, 1067
NsiI	ATGCAT	1 cut(s)	855
NspI	RCATGY	2 cut(s)	290, 758
PagI	TCATGA	1 cut(s)	451
PasI	CCCWGGG	1 cut(s)	232
PceI	AGGCCT	1 cut(s)	243
PctI	GAATGC	1 cut(s)	855
PdmI	GAANNNNTTC	1 cut(s)	429
PfeI	GAWTC	3 cut(s)	14, 671, 677
PinAI	ACCGGT	1 cut(s)	76
PkrI	GCNGC	5 cut(s)	42, 370, 385, 640, 954
PleI	GAGTC	1 cut(s)	740
PpsI	GAGTC	1 cut(s)	740
Psp6I	CCWGG	2 cut(s)	231, 978
PspFI	CCCAGC	1 cut(s)	100
PspGI	CCWGG	2 cut(s)	231, 978
PspN4I	GGNNCC	8 cut(s)	111, 552, 741, 894, 1005, 1026, 1046, 1067
PspPI	GGNCC	4 cut(s)	1003, 1024, 1044, 1065
PsuI	RGATCY	2 cut(s)	457, 699
SatI	GCNGC	5 cut(s)	41, 369, 384, 639, 953
Sau3AI	GATC	5 cut(s)	193, 399, 457, 699, 801
Sau96I	GGNCC	4 cut(s)	1003, 1024, 1044, 1065
SchI	GAGTC	1 cut(s)	740
ScrFI	CCNGG	2 cut(s)	233, 980
SfaNI	GCATC	5 cut(s)	130, 173, 370, 848, 862
SmlI	CTYRAG	1 cut(s)	903
SmoI	CTYRAG	1 cut(s)	903
Sse9I	AATT	3 cut(s)	35, 89, 869
SseBI	AGGCCT	1 cut(s)	243
SsiI	CCGC	1 cut(s)	857
SspMI	CTAG	4 cut(s)	357, 387, 665, 959
StuI	AGGCCT	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	231, 978
StyI	CCWWGG	4 cut(s)	999, 1020, 1040, 1061
TaaI	ACNGT	3 cut(s)	268, 584, 633
TaqI	TCGA	4 cut(s)	47, 214, 283, 361
TasI	AATT	3 cut(s)	35, 89, 869
TfiI	GAWTC	3 cut(s)	14, 671, 677
TseI	GCWGC	5 cut(s)	40, 368, 383, 638, 952
TspDTI	ATGAA	7 cut(s)	71, 288, 330, 440, 501, 512, 882
TspGWI	ACGGA	2 cut(s)	301, 895
XapI	RAATTY	1 cut(s)	869
XceI	RCATGY	2 cut(s)	290, 758
XmnI	GAANNNNTTC	1 cut(s)	429
XspI	CTAG	4 cut(s)	357, 387, 665, 959
Zsp2I	ATGCAT	1 cut(s)	855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.