Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0021158

Physical Location & Seq

Genomic Coordinates Reverse (-)

31795686 .. 31803709

Gene Structure 8024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1257100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCGGCTTCCGATTCCAATGTCCCTCAGCGCCGATCGCAGCCCTCAAACCAACCTCCACCACAAAACCCGACTCCGACTCCGGTTCAGCACAAAGTTACGGCTCAGCATCCGGCTTCTTCTGCTTCTCCATCAGCTTCTTCTTCCAAGAGTCACCTGACGCACAAAAATCAGCTGCATGAATATGCCCAGCGAGCAGGTATTTCGCCTCCTGTTTATCGGACTGTTAATGAAGGAATGATAAATAAACCAGTCTATAGGTCTGCTGTGTTGGTTGGTGGAGTTTGCTATACTTCACCCGACACATTTCCTGGGCGAAAAGCTGCTGAACAAGATGCAGCGAGACTTGCCATGATTAGTTTAACGGAGAAGATAAAGGATGAAGTTCCTCCTATTCCTAATATTCCTTCTGTTACTCCTGTTCATGAGGATCTGATGTTGTGCAAGATCATCCTGAATGATTATAGAACGAAGAGGAATATTGAACCACCTACATACCACACTTTTCAGGGAAAAGCGAGGGTTCCATTTTTTGTATCTTCTTTGGTTTTCAATGGTGTGACTTATAAAGGGAAAGCTGCAAAAAGAAAGAAAGAGGCTGAACAGTTGGCGGCTCGTGCTGTTATTCAATCGCTTCTGGGTGACTCTGAATCAGCGCCCATTATGTTGGAGATCCTTAGGTCTAAAAACAAACTTGCACATAAGAGTAAGGAGCCAGACTGTTCTCATGCCAGTCTTGCTACTTCAGCAGTAAACGCAGGTCAAAGTTATGGAATCTCAACTGACACTCCAATAGCTGCTGCACCTGAGGCATCTTTGGGAATGCATCCTCCACACCATGAATTTATCAAACGGAAGCAAGAGGAACCAGCTTCTCAAGCAACCCCCCAGCTTCCCATAACTTCGTTGGCTGCTGCTCCAACTTCTTTGTCTACTGCCCCAACTTCCTTGGTTGCTGCTCCAACTTCCTTGCCCCCTGCTCCAACTTCTTTGGGCGTCTCTCCAACTTCTTGTGCTGTTCTTCCAGCTTTCAAAAAGCGGCGTAAGAACATGAAGGCTGAAAAGAACTTGCAGAATAGTGCCCAGTTGCCAGTTGGTACGCTGAACGTGAATCAACCAGCATCTTGTTCAGTGTCGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0032296 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dsrm

Protein Analysis

381

Amino Acids

40.59

Weight (kDa)

9.67

Isoelectric Point (pI)

65.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dsrm	PF00035	56 - 118	7.5e-07	Double-stranded RNA binding motif
dsrm	PF00035	151 - 212	1.2e-08	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021158)

Species	Orthologous Gene IDs
malus_domestica	MD09G1262200.v1.1 MD17G1257100.v1.1
pyrus_communis	pycom09g17660 pycom17g25940
rosa_samantha	Rh3DG304200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
Acc36I	ACCTGC	2 cut(s)	188, 749
AccI	GTMKAC	1 cut(s)	932
AciI	CCGC	3 cut(s)	5, 611, 1039
AclWI	GGATC	2 cut(s)	438, 667
AcsI	RAATTY	1 cut(s)	842
AcuI	CTGAAG	1 cut(s)	729
AcyI	GRCGYC	1 cut(s)	996
AfaI	GTAC	1 cut(s)	1099
AgsI	TTSAA	4 cut(s)	485, 553, 629, 1033
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	8 cut(s)	137, 175, 323, 578, 797, 872, 892, 1028
AluI	AGCT	8 cut(s)	137, 175, 323, 578, 797, 872, 892, 1028
Alw26I	GTCTC	2 cut(s)	337, 1003
AlwI	GGATC	2 cut(s)	438, 667
ApoI	RAATTY	1 cut(s)	842
AspLEI	GCGC	2 cut(s)	33, 658
AsuHPI	GGTGA	3 cut(s)	146, 288, 653
AxyI	CCTNAGG	2 cut(s)	677, 807
BaeGI	GKGCMC	1 cut(s)	1084
BauI	CACGAG	1 cut(s)	615
BbvCI	CCTCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	139
BceAI	ACGGC	1 cut(s)	117
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BciT130I	CCWGG	1 cut(s)	312
BcoDI	GTCTC	2 cut(s)	337, 1003
BfmI	CTRYAG	1 cut(s)	256
BfoI	RGCGCY	2 cut(s)	34, 659
BfuAI	ACCTGC	2 cut(s)	188, 749
BlpI	GCTNAGC	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	312
BmiI	GGNNCC	3 cut(s)	525, 714, 867
BmrFI	CCNGG	1 cut(s)	312
BmrI	ACTGGG	1 cut(s)	1078
BmsI	GCATC	5 cut(s)	118, 325, 821, 835, 1130
BmuI	ACTGGG	1 cut(s)	1078
Bpu10I	CCTNAGC	1 cut(s)	27
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	861
BsaHI	GRCGYC	1 cut(s)	996
BsaJI	CCNNGG	2 cut(s)	311, 948
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	4 cut(s)	64, 94, 772, 802
Bse1I	ACTGG	4 cut(s)	251, 732, 1084, 1091
Bse21I	CCTNAGG	2 cut(s)	677, 807
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	311, 948
BseGI	GGATG	4 cut(s)	109, 385, 450, 826
BseMII	CTCAG	3 cut(s)	41, 119, 798
BseNI	ACTGG	4 cut(s)	251, 732, 1084, 1091
BseSI	GKGCMC	1 cut(s)	1084
BseYI	CCCAGC	2 cut(s)	189, 888
BsgI	GTGCAG	1 cut(s)	786
Bsh1285I	CGRYCG	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	38
BsiSI	CCGG	2 cut(s)	83, 113
BslFI	GGGAC	1 cut(s)	8
BsmAI	GTCTC	2 cut(s)	337, 1003
BsmBI	CGTCTC	1 cut(s)	1003
BsmFI	GGGAC	1 cut(s)	8
BsmI	GAATGC	1 cut(s)	828
Bsp1286I	GDGCHC	1 cut(s)	1084
Bsp143I	GATC	4 cut(s)	35, 430, 447, 672
Bsp1720I	GCTNAGC	1 cut(s)	105
BspACI	CCGC	3 cut(s)	5, 611, 1039
BspCNI	CTCAG	3 cut(s)	40, 118, 799
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	3 cut(s)	525, 714, 867
BspMI	ACCTGC	2 cut(s)	188, 749
BspPI	GGATC	2 cut(s)	438, 667
BsrI	ACTGG	4 cut(s)	251, 732, 1084, 1091
BssECI	CCNNGG	2 cut(s)	311, 948
BssMI	GATC	4 cut(s)	35, 430, 447, 672
BssNI	GRCGYC	1 cut(s)	996
BssSI	CACGAG	1 cut(s)	615
BssT1I	CCWWGG	1 cut(s)	948
Bst2BI	CACGAG	1 cut(s)	615
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	3 cut(s)	226, 606, 722
Bst6I	CTCTTC	1 cut(s)	467
BstACI	GRCGYC	1 cut(s)	996
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	4 cut(s)	27, 105, 677, 807
BstF5I	GGATG	4 cut(s)	109, 385, 450, 826
BstH2I	RGCGCY	2 cut(s)	34, 659
BstHHI	GCGC	2 cut(s)	33, 658
BstKTI	GATC	4 cut(s)	38, 433, 450, 675
BstMAI	GTCTC	2 cut(s)	337, 1003
BstMBI	GATC	4 cut(s)	35, 430, 447, 672
BstMCI	CGRYCG	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	256
BstSLI	GKGCMC	1 cut(s)	1084
BstX2I	RGATCY	2 cut(s)	430, 672
BstXI	CCANNNNNNTGG	1 cut(s)	667
BstYI	RGATCY	2 cut(s)	430, 672
Bsu36I	CCTNAGG	2 cut(s)	677, 807
BtsCI	GGATG	4 cut(s)	109, 385, 450, 826
BtsIMutI	CAGTG	1 cut(s)	1137
BveI	ACCTGC	2 cut(s)	188, 749
Cac8I	GCNNGC	1 cut(s)	195
CciI	TCATGA	1 cut(s)	424
CfoI	GCGC	2 cut(s)	33, 658
CseI	GACGC	2 cut(s)	169, 985
Csp6I	GTAC	1 cut(s)	1098
CviAII	CATG	6 cut(s)	179, 352, 425, 728, 839, 1051
CviQI	GTAC	1 cut(s)	1098
DdeI	CTNAG	4 cut(s)	27, 105, 677, 807
DpnI	GATC	4 cut(s)	37, 432, 449, 674
DpnII	GATC	4 cut(s)	35, 430, 447, 672
Eam1104I	CTCTTC	1 cut(s)	467
EarI	CTCTTC	1 cut(s)	467
Eco130I	CCWWGG	1 cut(s)	948
Eco57I	CTGAAG	1 cut(s)	729
Eco81I	CCTNAGG	2 cut(s)	677, 807
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	948
EcoT22I	ATGCAT	1 cut(s)	828
ErhI	CCWWGG	1 cut(s)	948
Esp3I	CGTCTC	1 cut(s)	1003
FaeI	CATG	6 cut(s)	182, 355, 428, 731, 842, 1054
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	6 cut(s)	178, 351, 424, 727, 838, 1050
FblI	GTMKAC	1 cut(s)	932
FokI	GGATG	4 cut(s)	96, 392, 437, 813
GlaI	GCGC	2 cut(s)	32, 657
GsaI	CCCAGC	2 cut(s)	193, 892
HaeII	RGCGCY	2 cut(s)	34, 659
HapII	CCGG	2 cut(s)	83, 113
HgaI	GACGC	2 cut(s)	169, 985
HhaI	GCGC	2 cut(s)	33, 658
Hin1I	GRCGYC	1 cut(s)	996
Hin1II	CATG	6 cut(s)	182, 355, 428, 731, 842, 1054
Hin6I	GCGC	2 cut(s)	31, 656
HinP1I	GCGC	2 cut(s)	31, 656
HinfI	GANTC	8 cut(s)	14, 73, 79, 151, 644, 650, 774, 1111
HpaII	CCGG	2 cut(s)	83, 113
HphI	GGTGA	3 cut(s)	146, 288, 653
Hpy166II	GTNNAC	2 cut(s)	754, 933
Hpy188I	TCNGA	5 cut(s)	13, 78, 222, 435, 649
Hpy188III	TCNNGA	2 cut(s)	425, 454
Hpy8I	GTNNAC	2 cut(s)	754, 933
HpyAV	CCTTC	3 cut(s)	227, 417, 1048
HpyCH4III	ACNGT	3 cut(s)	226, 606, 722
HpyCH4IV	ACGT	1 cut(s)	1107
HpyCH4V	TGCA	8 cut(s)	178, 338, 444, 581, 698, 803, 826, 1072
HpyF3I	CTNAG	4 cut(s)	27, 105, 677, 807
HpySE526I	ACGT	1 cut(s)	1107
Hsp92I	GRCGYC	1 cut(s)	996
Hsp92II	CATG	6 cut(s)	182, 355, 428, 731, 842, 1054
HspAI	GCGC	2 cut(s)	31, 656
Kzo9I	GATC	4 cut(s)	35, 430, 447, 672
LmnI	GCTCC	4 cut(s)	712, 922, 964, 985
LweI	GCATC	5 cut(s)	118, 325, 821, 835, 1130
MaeII	ACGT	1 cut(s)	1107
MaeIII	GTNAC	5 cut(s)	97, 152, 412, 559, 641
MalI	GATC	4 cut(s)	37, 432, 449, 674
MboI	GATC	4 cut(s)	35, 430, 447, 672
MboII	GAAGA	7 cut(s)	111, 132, 135, 382, 484, 531, 1013
MflI	RGATCY	2 cut(s)	430, 672
MhlI	GDGCHC	1 cut(s)	1084
MluCI	AATT	1 cut(s)	842
MlyI	GAGTC	4 cut(s)	67, 73, 160, 638
MmeI	TCCRAC	6 cut(s)	101, 648, 944, 986, 1007, 1028
Mph1103I	ATGCAT	1 cut(s)	828
MseI	TTAA	2 cut(s)	228, 362
MslI	CAYNNNNRTG	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	175
MspI	CCGG	2 cut(s)	83, 113
MspR9I	CCNGG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	828
MvaI	CCWGG	1 cut(s)	312
NdeII	GATC	4 cut(s)	35, 430, 447, 672
NlaIII	CATG	6 cut(s)	182, 355, 428, 731, 842, 1054
NlaIV	GGNNCC	3 cut(s)	525, 714, 867
NmuCI	GTSAC	3 cut(s)	152, 559, 641
NsiI	ATGCAT	1 cut(s)	828
PagI	TCATGA	1 cut(s)	424
PctI	GAATGC	1 cut(s)	828
PfeI	GAWTC	4 cut(s)	14, 650, 774, 1111
Ple19I	CGATCG	1 cut(s)	38
PleI	GAGTC	4 cut(s)	67, 73, 159, 638
PpsI	GAGTC	4 cut(s)	67, 73, 159, 638
PsiI	TTATAA	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	310
PspFI	CCCAGC	2 cut(s)	189, 888
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	3 cut(s)	525, 714, 867
PsuI	RGATCY	2 cut(s)	430, 672
PvuI	CGATCG	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	175
RsaI	GTAC	1 cut(s)	1099
RsaNI	GTAC	1 cut(s)	1098
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	228, 362
Sau3AI	GATC	4 cut(s)	35, 430, 447, 672
SchI	GAGTC	4 cut(s)	67, 73, 160, 638
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	1084
SfaNI	GCATC	5 cut(s)	118, 325, 821, 835, 1130
SfcI	CTRYAG	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	876
SmoI	CTYRAG	1 cut(s)	876
Sse9I	AATT	1 cut(s)	842
SsiI	CCGC	3 cut(s)	5, 611, 1039
SspI	AATATT	2 cut(s)	403, 481
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	948
TaaI	ACNGT	3 cut(s)	226, 606, 722
TaiI	ACGT	1 cut(s)	1110
TasI	AATT	1 cut(s)	842
TauI	GCSGC	3 cut(s)	8, 614, 1042
TfiI	GAWTC	4 cut(s)	14, 650, 774, 1111
Tru1I	TTAA	2 cut(s)	228, 362
Tru9I	TTAA	2 cut(s)	228, 362
TscAI	CASTG	1 cut(s)	1137
TseFI	GTSAC	3 cut(s)	152, 559, 641
Tsp45I	GTSAC	3 cut(s)	152, 559, 641
TspDTI	ATGAA	6 cut(s)	195, 246, 396, 413, 855, 1067
TspGWI	ACGGA	2 cut(s)	380, 868
TspRI	CASTG	1 cut(s)	1137
XapI	RAATTY	1 cut(s)	842
XcmI	CCANNNNNNNNNTGG	2 cut(s)	904, 1091
XmiI	GTMKAC	1 cut(s)	932
Zsp2I	ATGCAT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.