Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0021158

Physical Location & Seq

Genomic Coordinates Reverse (-)

24274846 .. 24277541

Gene Structure 2696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g25940.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGCGGCTCCCGATTCCAATGTCCCTCAGCGCCAATCGCAGCCCTCAAACCAACCTCCACCACAAAACCCGACTCCGACTCCGACTCCGGTTCAGCATCCGGCTTCTTCTGCTTCTCCATCAGCTTCTTCTTCCAAGAGTCACCTGACGCACAAAAATCAGCTGCATGAATATGCCCAGCGAGCAGGCATTTCGCCTCCTGTTTATCGGTCTGTTAATGAAGGAATGATAAATAGACCAGTGTTTAGGTCTGCTGTGTTGGTTGGTGGAGTTTGCTATACTTCACCCGACACATTTCCTGGGCGAAAAGCCGCTGAACAAGATGCAGCGAGACTTGCCATGATTAGTTTAACAGAGAAGATAAAGGATGAAGTTTGTCCTATTCCTCCTATTCCTCCTATTCCTCCTATTCCTTCTGTTACTCCTGTTCATGAGGATCTGATGTTGTGCAAGATGATGCTGAATGAATATAGAACGAAGAGGAATATTGAACCACCTACATACCACACTTTTAAGGGAAAAACGAAGGTTCCATTTTTTGTATCTTCTTTGGTTTTCAATGGTGTGACTTTTACAGGGGAAGTTGCAAAAAGAAAGAAAGAGGCTGAACAGTTGGCGGCTCGTGTTGTTGTCCAATCGCTTCTGGGTGATTCTGAATCAGCGCCCATTATGTTGGAGATCCTTAGGTCTAAAAACAAACTTGCACATAAGAGTAAGGAGCCAGCCTGTTTTCATGCCAGTCTTGCTACTTCAGCAGTAAATGCAGGTCAAGGTTGTGTAATCTCGACTGACACTCCAATAGCTGCTGCACCTGAGGCATCTTTGGGAATGCATCCTACACACCATGAATTTATCAAACGGAAGCGAGAGGAACAAGCTTGTCAAGCAACCGCCCAGCTTCCCATAACTTCGTTGGCTGCTGCTCCAACTTCTTTGTCAAATGCCCCAACTTCCTTGGTTGCTGCTCCAACTTCCTTGCCCCCTGCTCCAACTTCTTTGGGCGTCTCTCCAACTTCTTGTGCTGTTCTTCCAGCTTCCAAAAAGCGGCGTAAGAACATGAAGGCTGAAAAGAACTTGCAGAATAATGCCCATTTGCCAGTTGGTACGTTGAACTTGAATCAACGAGCATCTTGTTCAGTGTCGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0032296 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dsrm

Protein Analysis

383

Amino Acids

40.84

Weight (kDa)

9.56

Isoelectric Point (pI)

64.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021158)

Species	Orthologous Gene IDs
malus_domestica	MD09G1262200.v1.1 MD17G1257100.v1.1
pyrus_communis	pycom09g17660 pycom17g25940
rosa_samantha	Rh3DG304200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	755
AciI	CCGC	5 cut(s)	5, 312, 617, 891, 1045
AclWI	GGATC	2 cut(s)	444, 673
AcsI	RAATTY	1 cut(s)	848
AcuI	CTGAAG	1 cut(s)	735
AcyI	GRCGYC	1 cut(s)	1002
AfaI	GTAC	1 cut(s)	1105
AfiI	CCNNNNNNNGG	1 cut(s)	1044
AgsI	TTSAA	4 cut(s)	491, 559, 1111, 1117
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	6 cut(s)	125, 163, 803, 878, 898, 1034
AluI	AGCT	6 cut(s)	125, 163, 803, 878, 898, 1034
Alw26I	GTCTC	2 cut(s)	325, 1009
AlwI	GGATC	2 cut(s)	444, 673
ApeKI	GCWGC	8 cut(s)	40, 163, 326, 803, 806, 917, 920, 962
ApoI	RAATTY	1 cut(s)	848
AspLEI	GCGC	2 cut(s)	33, 664
AsuHPI	GGTGA	3 cut(s)	134, 276, 659
AxyI	CCTNAGG	2 cut(s)	683, 813
BauI	CACGAG	1 cut(s)	621
BbvCI	CCTCAGC	1 cut(s)	27
BbvI	GCAGC	8 cut(s)	52, 150, 338, 790, 793, 904, 907, 949
BccI	CCATC	1 cut(s)	127
BcgI	CGANNNNNNTGC	2 cut(s)	174, 208
BciT130I	CCWGG	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	325, 1009
BfoI	RGCGCY	2 cut(s)	34, 665
BfuAI	ACCTGC	1 cut(s)	755
Bme1390I	CCNGG	1 cut(s)	300
BmiI	GGNNCC	3 cut(s)	9, 531, 720
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	6 cut(s)	106, 313, 447, 827, 841, 1136
Bpu10I	CCTNAGC	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	1002
BsaJI	CCNNGG	2 cut(s)	299, 954
BsaWI	WCCGGW	1 cut(s)	88
BsaXI	ACNNNNNCTCC	6 cut(s)	64, 70, 94, 100, 778, 808
Bsc4I	CCNNNNNNNGG	1 cut(s)	1044
Bse1I	ACTGG	3 cut(s)	239, 738, 1097
Bse21I	CCTNAGG	2 cut(s)	683, 813
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	299, 954
BseGI	GGATG	3 cut(s)	97, 373, 832
BseLI	CCNNNNNNNGG	1 cut(s)	1044
BseMII	CTCAG	2 cut(s)	41, 804
BseNI	ACTGG	3 cut(s)	239, 738, 1097
BseXI	GCAGC	8 cut(s)	52, 150, 338, 790, 793, 904, 907, 949
BseYI	CCCAGC	2 cut(s)	177, 894
BsgI	GTGCAG	1 cut(s)	792
BsiSI	CCGG	2 cut(s)	89, 101
BslFI	GGGAC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	1044
BsmAI	GTCTC	2 cut(s)	325, 1009
BsmBI	CGTCTC	1 cut(s)	1009
BsmFI	GGGAC	1 cut(s)	8
BsmI	GAATGC	1 cut(s)	834
Bsp143I	GATC	2 cut(s)	436, 678
BspACI	CCGC	5 cut(s)	5, 312, 617, 891, 1045
BspCNI	CTCAG	2 cut(s)	40, 805
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	3 cut(s)	9, 531, 720
BspMI	ACCTGC	1 cut(s)	755
BspPI	GGATC	2 cut(s)	444, 673
BsrI	ACTGG	3 cut(s)	239, 738, 1097
BssECI	CCNNGG	2 cut(s)	299, 954
BssMI	GATC	2 cut(s)	436, 678
BssNI	GRCGYC	1 cut(s)	1002
BssSI	CACGAG	1 cut(s)	621
BssT1I	CCWWGG	1 cut(s)	954
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	612
Bst6I	CTCTTC	1 cut(s)	473
BstACI	GRCGYC	1 cut(s)	1002
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstC8I	GCNNGC	3 cut(s)	183, 187, 723
BstDEI	CTNAG	3 cut(s)	27, 683, 813
BstF5I	GGATG	3 cut(s)	97, 373, 832
BstH2I	RGCGCY	2 cut(s)	34, 665
BstHHI	GCGC	2 cut(s)	33, 664
BstKTI	GATC	2 cut(s)	439, 681
BstMAI	GTCTC	2 cut(s)	325, 1009
BstMBI	GATC	2 cut(s)	436, 678
BstMWI	GCNNNNNNNGC	9 cut(s)	37, 110, 182, 335, 743, 752, 761, 815, 884
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BstV1I	GCAGC	8 cut(s)	52, 150, 338, 790, 793, 904, 907, 949
BstX2I	RGATCY	2 cut(s)	436, 678
BstXI	CCANNNNNNTGG	1 cut(s)	673
BstYI	RGATCY	2 cut(s)	436, 678
Bsu36I	CCTNAGG	2 cut(s)	683, 813
BtsCI	GGATG	3 cut(s)	97, 373, 832
BtsIMutI	CAGTG	2 cut(s)	246, 1143
BveI	ACCTGC	1 cut(s)	755
Cac8I	GCNNGC	3 cut(s)	183, 187, 723
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	2 cut(s)	33, 664
CseI	GACGC	2 cut(s)	157, 991
Csp6I	GTAC	1 cut(s)	1104
CviAII	CATG	6 cut(s)	167, 340, 431, 734, 845, 1057
CviQI	GTAC	1 cut(s)	1104
DdeI	CTNAG	3 cut(s)	27, 683, 813
DpnI	GATC	2 cut(s)	438, 680
DpnII	GATC	2 cut(s)	436, 678
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	954
Eco57I	CTGAAG	1 cut(s)	735
Eco81I	CCTNAGG	2 cut(s)	683, 813
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	954
EcoT22I	ATGCAT	1 cut(s)	834
ErhI	CCWWGG	1 cut(s)	954
Esp3I	CGTCTC	1 cut(s)	1009
FaeI	CATG	6 cut(s)	170, 343, 434, 737, 848, 1060
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	6 cut(s)	166, 339, 430, 733, 844, 1056
FokI	GGATG	3 cut(s)	84, 380, 819
GlaI	GCGC	2 cut(s)	32, 663
GsaI	CCCAGC	2 cut(s)	181, 898
HaeII	RGCGCY	2 cut(s)	34, 665
HapII	CCGG	2 cut(s)	89, 101
HgaI	GACGC	2 cut(s)	157, 991
HhaI	GCGC	2 cut(s)	33, 664
Hin1I	GRCGYC	1 cut(s)	1002
Hin1II	CATG	6 cut(s)	170, 343, 434, 737, 848, 1060
Hin6I	GCGC	2 cut(s)	31, 662
HinP1I	GCGC	2 cut(s)	31, 662
HindIII	AAGCTT	1 cut(s)	876
HinfI	GANTC	8 cut(s)	14, 73, 79, 85, 139, 650, 656, 1117
HpaII	CCGG	2 cut(s)	89, 101
HphI	GGTGA	3 cut(s)	134, 276, 659
Hpy188I	TCNGA	4 cut(s)	78, 84, 441, 655
Hpy188III	TCNNGA	3 cut(s)	11, 431, 784
HpyAV	CCTTC	4 cut(s)	215, 423, 520, 1054
HpyCH4III	ACNGT	1 cut(s)	612
HpyCH4IV	ACGT	1 cut(s)	1106
HpyCH4V	TGCA	9 cut(s)	166, 326, 450, 587, 704, 764, 809, 832, 1078
HpyF10VI	GCNNNNNNNGC	9 cut(s)	37, 110, 182, 335, 743, 752, 761, 815, 884
HpyF3I	CTNAG	3 cut(s)	27, 683, 813
HpySE526I	ACGT	1 cut(s)	1106
Hsp92I	GRCGYC	1 cut(s)	1002
Hsp92II	CATG	6 cut(s)	170, 343, 434, 737, 848, 1060
HspAI	GCGC	2 cut(s)	31, 662
Kzo9I	GATC	2 cut(s)	436, 678
LmnI	GCTCC	5 cut(s)	13, 718, 928, 970, 991
Lsp1109I	GCAGC	8 cut(s)	52, 150, 338, 790, 793, 904, 907, 949
LweI	GCATC	6 cut(s)	106, 313, 447, 827, 841, 1136
MaeII	ACGT	1 cut(s)	1106
MaeIII	GTNAC	3 cut(s)	140, 418, 565
MalI	GATC	2 cut(s)	438, 680
MboI	GATC	2 cut(s)	436, 678
MboII	GAAGA	7 cut(s)	99, 120, 123, 370, 490, 537, 1019
MflI	RGATCY	2 cut(s)	436, 678
MluCI	AATT	1 cut(s)	848
MlyI	GAGTC	4 cut(s)	67, 73, 79, 148
MmeI	TCCRAC	7 cut(s)	101, 107, 654, 950, 992, 1013, 1034
Mph1103I	ATGCAT	1 cut(s)	834
MseI	TTAA	3 cut(s)	216, 350, 513
MslI	CAYNNNNRTG	1 cut(s)	171
MspA1I	CMGCKG	2 cut(s)	163, 314
MspI	CCGG	2 cut(s)	89, 101
MspR9I	CCNGG	1 cut(s)	300
Mva1269I	GAATGC	1 cut(s)	834
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	9 cut(s)	37, 110, 182, 335, 743, 752, 761, 815, 884
NdeII	GATC	2 cut(s)	436, 678
NlaIII	CATG	6 cut(s)	170, 343, 434, 737, 848, 1060
NlaIV	GGNNCC	3 cut(s)	9, 531, 720
NmuCI	GTSAC	2 cut(s)	140, 565
NsiI	ATGCAT	1 cut(s)	834
PagI	TCATGA	1 cut(s)	430
PctI	GAATGC	1 cut(s)	834
PfeI	GAWTC	4 cut(s)	14, 650, 656, 1117
PleI	GAGTC	4 cut(s)	67, 73, 79, 147
PpsI	GAGTC	4 cut(s)	67, 73, 79, 147
Psp6I	CCWGG	1 cut(s)	298
PspFI	CCCAGC	2 cut(s)	177, 894
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	3 cut(s)	9, 531, 720
PsuI	RGATCY	2 cut(s)	436, 678
PvuII	CAGCTG	1 cut(s)	163
RsaI	GTAC	1 cut(s)	1105
RsaNI	GTAC	1 cut(s)	1104
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	216, 350, 513
Sau3AI	GATC	2 cut(s)	436, 678
SchI	GAGTC	4 cut(s)	67, 73, 79, 148
ScrFI	CCNGG	1 cut(s)	300
SfaNI	GCATC	6 cut(s)	106, 313, 447, 827, 841, 1136
SmiMI	CAYNNNNRTG	1 cut(s)	171
Sse9I	AATT	1 cut(s)	848
SsiI	CCGC	5 cut(s)	5, 312, 617, 891, 1045
SspI	AATATT	1 cut(s)	487
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	954
TaaI	ACNGT	1 cut(s)	612
TaiI	ACGT	1 cut(s)	1109
TaqI	TCGA	1 cut(s)	785
TaqII	GACCGA	1 cut(s)	198
TasI	AATT	1 cut(s)	848
TauI	GCSGC	4 cut(s)	8, 314, 620, 1048
TfiI	GAWTC	4 cut(s)	14, 650, 656, 1117
Tru1I	TTAA	3 cut(s)	216, 350, 513
Tru9I	TTAA	3 cut(s)	216, 350, 513
TscAI	CASTG	2 cut(s)	246, 1143
TseFI	GTSAC	2 cut(s)	140, 565
TseI	GCWGC	8 cut(s)	40, 163, 326, 803, 806, 917, 920, 962
Tsp45I	GTSAC	2 cut(s)	140, 565
TspDTI	ATGAA	8 cut(s)	183, 234, 384, 419, 480, 722, 861, 1073
TspGWI	ACGGA	1 cut(s)	874
TspRI	CASTG	2 cut(s)	246, 1143
XapI	RAATTY	1 cut(s)	848
XcmI	CCANNNNNNNNNTGG	2 cut(s)	910, 1097
Zsp2I	ATGCAT	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.