Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0018722

Physical Location & Seq

Genomic Coordinates Reverse (-)

34069526 .. 34072051

Gene Structure 2526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1266200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAACACATATATTGACCTTGAAGTGGAAGCCTCATCGGCAAATGACTCTGATGTTAGCAGCCAAGTTGCTTCTAACATCTCCATCCAAGATACATCTGCTAATACCTCCAAAGACAGCGCGGCTAACTCTTTCCATTTTTCAAATCTCAATGCAGCTCAGCAAGGATTGGGTCCTGCAGTTTCCCTTGATTTGACACATAGCTTCAATAAGGAGGACTTAGGAAGGGATTCGACAGGACTCTCATTGTCGAGCACGAGTGAGAGCAGCAATGAACCTTCATCTCAGAACATAACATCAGCCAGTCCAAGACTTTTTTCTTGCAATTACTGTCAATGCAAATTCTTGAGCTCACAGGCGCTTGGTGGACACCAAAATGCACACAAGAAAGAAAGGACGCTGGCAAAACGCGCTATGAGAATGAGTATTTTCTCCGAGAGCTACGCAAGTCTGGCATCTTTGCCTCTTCACGGATCTTCATTCAGATCACTAGGTATCAGAGCACACTCATCAGTGCATCAAGGGTTTGCACCGCCAGTGAGGCCTGCCGAGATTGGGAGCGGTGCACGATTTGAACACGGGTACATGGGGGTACCAATTTTCTTGGTGGATGATGGGGTGGAGCTGTTATGGCCTGGTAGTTTCCGCCAGGCTAGCGCTGCGGAGACAAGTAACTCTACTCACCCAAGTTTTGTACTGACTCATGAAAGTTCAAATTTGAATTTTGCAGAGGTGACACCGCCCGTGGACGTCAAAGACAACTCTGCACCAGATCTCACACTGAAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

28.06

Weight (kDa)

5.63

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66140
malus_domestica	MD09G1266200.v1.1 MD17G1262500.v1.1
prunus_persica	Prupe.3G164100_v2.0.a1 Prupe.3G164100_v2.0.a1 Prupe.3G164100_v2.0.a1 Prupe.3G164100_v2.0.a1
pyrus_communis	pycom09g17940 pycom17g26250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	753
Acc65I	GGTACC	1 cut(s)	592
AccB1I	GGYRCC	1 cut(s)	592
AccBSI	CCGCTC	1 cut(s)	561
AccII	CGCG	2 cut(s)	122, 411
AciI	CCGC	6 cut(s)	122, 533, 561, 646, 662, 740
AclWI	GGATC	1 cut(s)	481
AcsI	RAATTY	3 cut(s)	341, 715, 721
AcyI	GRCGYC	1 cut(s)	750
AfaI	GTAC	3 cut(s)	584, 594, 696
AfeI	AGCGCT	1 cut(s)	658
AfiI	CCNNNNNNNGG	3 cut(s)	25, 470, 555
AgsI	TTSAA	6 cut(s)	23, 144, 208, 575, 714, 721
AjnI	CCWGG	2 cut(s)	634, 648
AjuI	GAANNNNNNNTTGG	2 cut(s)	301, 333
AluBI	AGCT	5 cut(s)	158, 204, 351, 441, 625
AluI	AGCT	5 cut(s)	158, 204, 351, 441, 625
Alw21I	GWGCWC	4 cut(s)	257, 353, 505, 568
Alw26I	GTCTC	1 cut(s)	659
Alw44I	GTGCAC	1 cut(s)	564
AlwI	GGATC	1 cut(s)	481
Aor51HI	AGCGCT	1 cut(s)	658
AoxI	GGCC	2 cut(s)	542, 632
ApaLI	GTGCAC	1 cut(s)	564
ApeKI	GCWGC	4 cut(s)	60, 155, 267, 659
ApoI	RAATTY	3 cut(s)	341, 715, 721
Asp700I	GAANNNNTTC	1 cut(s)	229
Asp718I	GGTACC	1 cut(s)	592
AspLEI	GCGC	4 cut(s)	122, 361, 413, 659
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	2 cut(s)	674, 745
AsuNHI	GCTAGC	1 cut(s)	653
AvaII	GGWCC	1 cut(s)	173
BaeGI	GKGCMC	1 cut(s)	568
BanI	GGYRCC	1 cut(s)	592
BanII	GRGCYC	1 cut(s)	353
BauI	CACGAG	1 cut(s)	256
Bbv12I	GWGCWC	4 cut(s)	257, 353, 505, 568
BbvI	GCAGC	4 cut(s)	72, 167, 279, 646
BccI	CCATC	2 cut(s)	92, 608
BciT130I	CCWGG	2 cut(s)	636, 650
BcoDI	GTCTC	1 cut(s)	659
BfaI	CTAG	2 cut(s)	491, 654
BfmI	CTRYAG	1 cut(s)	177
BfoI	RGCGCY	2 cut(s)	362, 660
BglI	GCCNNNNNGGC	2 cut(s)	38, 541
BglII	AGATCT	1 cut(s)	772
BisI	GCNGC	5 cut(s)	61, 123, 156, 268, 660
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	5 cut(s)	62, 124, 157, 269, 661
Bme1390I	CCNGG	2 cut(s)	636, 650
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	174, 594
BmrFI	CCNGG	2 cut(s)	636, 650
BmsI	GCATC	2 cut(s)	464, 526
BmtI	GCTAGC	1 cut(s)	657
Bpu1102I	GCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	367
BsaHI	GRCGYC	1 cut(s)	750
BsaJI	CCNNGG	1 cut(s)	744
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 470, 555
Bse1I	ACTGG	2 cut(s)	303, 536
Bse3DI	GCAATG	1 cut(s)	277
BseBI	CCWGG	2 cut(s)	636, 650
BseDI	CCNNGG	1 cut(s)	744
BseGI	GGATG	2 cut(s)	84, 616
BseLI	CCNNNNNNNGG	3 cut(s)	25, 470, 555
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	2 cut(s)	173, 299
BseNI	ACTGG	2 cut(s)	303, 536
BseSI	GKGCMC	1 cut(s)	568
BseXI	GCAGC	4 cut(s)	72, 167, 279, 646
BsgI	GTGCAG	1 cut(s)	750
Bsh1236I	CGCG	2 cut(s)	122, 411
BshFI	GGCC	2 cut(s)	544, 634
BshNI	GGYRCC	1 cut(s)	592
BsiHKAI	GWGCWC	4 cut(s)	257, 353, 505, 568
BslI	CCNNNNNNNGG	3 cut(s)	25, 470, 555
BsmAI	GTCTC	1 cut(s)	659
BsnI	GGCC	2 cut(s)	544, 634
Bsp1286I	GDGCHC	4 cut(s)	257, 353, 505, 568
Bsp143I	GATC	3 cut(s)	473, 485, 772
Bsp1720I	GCTNAGC	1 cut(s)	159
BspACI	CCGC	6 cut(s)	122, 533, 561, 646, 662, 740
BspANI	GGCC	2 cut(s)	544, 634
BspCNI	CTCAG	2 cut(s)	172, 298
BspFNI	CGCG	2 cut(s)	122, 411
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	2 cut(s)	174, 594
BspMAI	CTGCAG	1 cut(s)	181
BspOI	GCTAGC	1 cut(s)	657
BspPI	GGATC	1 cut(s)	481
BspT107I	GGYRCC	1 cut(s)	592
BsrBI	CCGCTC	1 cut(s)	561
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	2 cut(s)	303, 536
BssECI	CCNNGG	1 cut(s)	744
BssMI	GATC	3 cut(s)	473, 485, 772
BssNI	GRCGYC	1 cut(s)	750
BssSI	CACGAG	1 cut(s)	256
Bst2BI	CACGAG	1 cut(s)	256
Bst2UI	CCWGG	2 cut(s)	636, 650
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	471
BstACI	GRCGYC	1 cut(s)	750
BstC8I	GCNNGC	3 cut(s)	402, 546, 655
BstDEI	CTNAG	3 cut(s)	159, 220, 285
BstDSI	CCRYGG	1 cut(s)	744
BstF5I	GGATG	2 cut(s)	84, 616
BstFNI	CGCG	2 cut(s)	122, 411
BstH2I	RGCGCY	2 cut(s)	362, 660
BstHHI	GCGC	4 cut(s)	122, 361, 413, 659
BstKTI	GATC	3 cut(s)	476, 488, 775
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	3 cut(s)	473, 485, 772
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 410, 452, 541, 631, 654, 659
BstNI	CCWGG	2 cut(s)	636, 650
BstSCI	CCNGG	2 cut(s)	634, 648
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	568
BstUI	CGCG	2 cut(s)	122, 411
BstV1I	GCAGC	4 cut(s)	72, 167, 279, 646
BstX2I	RGATCY	2 cut(s)	473, 772
BstYI	RGATCY	2 cut(s)	473, 772
BsuRI	GGCC	2 cut(s)	544, 634
BtgI	CCRYGG	1 cut(s)	744
BtsCI	GGATG	2 cut(s)	84, 616
BtsIMutI	CAGTG	3 cut(s)	519, 543, 779
Cac8I	GCNNGC	3 cut(s)	402, 546, 655
CciI	TCATGA	1 cut(s)	703
CfoI	GCGC	4 cut(s)	122, 361, 413, 659
Cfr13I	GGNCC	1 cut(s)	173
CseI	GACGC	1 cut(s)	406
Csp6I	GTAC	3 cut(s)	583, 593, 695
CviAII	CATG	2 cut(s)	586, 704
CviQI	GTAC	3 cut(s)	583, 593, 695
DdeI	CTNAG	3 cut(s)	159, 220, 285
DpnI	GATC	3 cut(s)	475, 487, 774
DpnII	GATC	3 cut(s)	473, 485, 772
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
EciI	GGCGGA	1 cut(s)	635
Ecl136II	GAGCTC	1 cut(s)	351
Eco147I	AGGCCT	1 cut(s)	544
Eco24I	GRGCYC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	173
Eco47III	AGCGCT	1 cut(s)	658
Eco53kI	GAGCTC	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	351
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	634, 648
EcoT38I	GRGCYC	1 cut(s)	353
FaeI	CATG	2 cut(s)	589, 707
FaiI	YATR	9 cut(s)	10, 12, 201, 293, 416, 587, 631, 705, 790
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FatI	CATG	2 cut(s)	585, 703
Fnu4HI	GCNGC	5 cut(s)	61, 123, 156, 268, 660
FokI	GGATG	2 cut(s)	71, 623
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	5 cut(s)	61, 123, 156, 268, 660
FspBI	CTAG	2 cut(s)	491, 654
GlaI	GCGC	4 cut(s)	121, 360, 412, 658
GluI	GCNGC	5 cut(s)	61, 123, 156, 268, 660
HaeII	RGCGCY	2 cut(s)	362, 660
HaeIII	GGCC	2 cut(s)	544, 634
HgaI	GACGC	1 cut(s)	406
HhaI	GCGC	4 cut(s)	122, 361, 413, 659
Hin1I	GRCGYC	1 cut(s)	750
Hin1II	CATG	2 cut(s)	589, 707
Hin6I	GCGC	4 cut(s)	120, 359, 411, 657
HinP1I	GCGC	4 cut(s)	120, 359, 411, 657
HinfI	GANTC	4 cut(s)	47, 230, 240, 700
HphI	GGTGA	2 cut(s)	674, 745
Hpy166II	GTNNAC	3 cut(s)	368, 566, 748
Hpy188I	TCNGA	5 cut(s)	52, 288, 436, 485, 500
Hpy188III	TCNNGA	2 cut(s)	346, 704
Hpy8I	GTNNAC	3 cut(s)	368, 566, 748
HpyAV	CCTTC	2 cut(s)	219, 288
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	1 cut(s)	750
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 410, 452, 541, 631, 654, 659
HpyF3I	CTNAG	3 cut(s)	159, 220, 285
HpySE526I	ACGT	1 cut(s)	750
Hsp92I	GRCGYC	1 cut(s)	750
Hsp92II	CATG	2 cut(s)	589, 707
HspAI	GCGC	4 cut(s)	120, 359, 411, 657
KpnI	GGTACC	1 cut(s)	596
Kzo9I	GATC	3 cut(s)	473, 485, 772
LmnI	GCTCC	2 cut(s)	558, 622
Lsp1109I	GCAGC	4 cut(s)	72, 167, 279, 646
LweI	GCATC	2 cut(s)	464, 526
MaeI	CTAG	2 cut(s)	491, 654
MaeII	ACGT	1 cut(s)	750
MaeIII	GTNAC	2 cut(s)	671, 733
MalI	GATC	3 cut(s)	475, 487, 774
MbiI	CCGCTC	1 cut(s)	561
MboI	GATC	3 cut(s)	473, 485, 772
MboII	GAAGA	2 cut(s)	458, 468
MflI	RGATCY	2 cut(s)	473, 772
MhlI	GDGCHC	4 cut(s)	257, 353, 505, 568
MluCI	AATT	5 cut(s)	325, 341, 597, 715, 721
MlyI	GAGTC	3 cut(s)	41, 234, 694
MnlI	CCTC	6 cut(s)	43, 118, 208, 474, 534, 724
MroXI	GAANNNNTTC	1 cut(s)	229
MslI	CAYNNNNRTG	1 cut(s)	375
MspR9I	CCNGG	2 cut(s)	636, 650
MvaI	CCWGG	2 cut(s)	636, 650
MvnI	CGCG	2 cut(s)	122, 411
MwoI	GCNNNNNNNGC	7 cut(s)	38, 410, 452, 541, 631, 654, 659
NdeII	GATC	3 cut(s)	473, 485, 772
NheI	GCTAGC	1 cut(s)	653
NlaIII	CATG	2 cut(s)	589, 707
NlaIV	GGNNCC	2 cut(s)	174, 594
NmeAIII	GCCGAG	1 cut(s)	574
NmuCI	GTSAC	1 cut(s)	733
PagI	TCATGA	1 cut(s)	703
PceI	AGGCCT	1 cut(s)	544
PdmI	GAANNNNTTC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	5 cut(s)	62, 124, 157, 269, 661
PleI	GAGTC	3 cut(s)	41, 234, 694
PpsI	GAGTC	3 cut(s)	41, 234, 694
PpuMI	RGGWCCY	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	173
Psp6I	CCWGG	2 cut(s)	634, 648
PspGI	CCWGG	2 cut(s)	634, 648
PspN4I	GGNNCC	2 cut(s)	174, 594
PspPI	GGNCC	1 cut(s)	173
PspPPI	RGGWCCY	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	2 cut(s)	473, 772
RsaI	GTAC	3 cut(s)	584, 594, 696
RsaNI	GTAC	3 cut(s)	583, 593, 695
RseI	CAYNNNNRTG	1 cut(s)	375
SacI	GAGCTC	1 cut(s)	353
SatI	GCNGC	5 cut(s)	61, 123, 156, 268, 660
Sau3AI	GATC	3 cut(s)	473, 485, 772
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	3 cut(s)	41, 234, 694
ScrFI	CCNGG	2 cut(s)	636, 650
SduI	GDGCHC	4 cut(s)	257, 353, 505, 568
SfaNI	GCATC	2 cut(s)	464, 526
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	5 cut(s)	325, 341, 597, 715, 721
SseBI	AGGCCT	1 cut(s)	544
SsiI	CCGC	6 cut(s)	122, 533, 561, 646, 662, 740
SspMI	CTAG	2 cut(s)	491, 654
SstI	GAGCTC	1 cut(s)	353
StuI	AGGCCT	1 cut(s)	544
StyD4I	CCNGG	2 cut(s)	634, 648
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	1 cut(s)	753
TaqI	TCGA	2 cut(s)	233, 251
TasI	AATT	5 cut(s)	325, 341, 597, 715, 721
TatI	WGTACW	1 cut(s)	694
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	230
TscAI	CASTG	3 cut(s)	519, 543, 786
TseFI	GTSAC	1 cut(s)	733
TseI	GCWGC	4 cut(s)	60, 155, 267, 659
Tsp45I	GTSAC	1 cut(s)	733
TspDTI	ATGAA	5 cut(s)	17, 270, 288, 468, 720
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	3 cut(s)	519, 543, 786
VneI	GTGCAC	1 cut(s)	564
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	3 cut(s)	341, 715, 721
XmnI	GAANNNNTTC	1 cut(s)	229
XspI	CTAG	2 cut(s)	491, 654
ZraI	GACGTC	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.