Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0018722

Physical Location & Seq

Genomic Coordinates Reverse (-)

32304324 .. 32306510

Gene Structure 2187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1262500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAACACATATATTGACCTTGAAGTGGAAGCCTCATCGGCAAATGACTCTGATGTTAGCAGCCAAATTGCTTCTAACACCTCCAACGACAGCGTGGCTAACTCTTTCCATTTTTCAAATCCCATTGCAGCTCAGCAAGTACTGGAGCCTGCAGTTTCCCTTGACTTAACTCTTCGCTTCAACAATGAGGACTTGGGAGGAAGTGATTCGATAGGACAGTCATTGTTGAGCACAAGTGGGAGCAGCAATGAGCCTGCGTCTCAGAACACGAATTCAGCGACTCCAAGACTTTTTTCTTGTAATTACTGTCGAAGCAAATTCTTGAGCTCACAGGCACTTGGTGGACACCAAAATGCACACAAGAAAGAGAGGACACTAGCAAAGTGCGCATTGCGAATGAGTATTTTCTCTGAGAGGCACGCAAGCCTGGCGTCTTTGCCTCTGCAAGGACCTTCATTTAGATCACTAGGTATCAGAGCACACTCATCAGTGCATCAAGGATTTGCACCACCAATGAGGCCTCCTGAGACCAGAAGCGGCGCAGGATTTGAACACGGGTATATGGGAGTGCCAATTTTCTTGGTGAATGATGGGGCGCAGCTGTTGTGGCCTGGTAGTTTCCGCCAGGCTAGCGCTGCCGACACAAGTAACACTACTCACCCAAGTTTTGTACTGACTCATGAAAGTTCAAATTTGAATTTTGTAGACGTTACACCGCCATTAGACGCCATAGACCACTCTGCACCAGATCTCACACTGAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

27.26

Weight (kDa)

5.75

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66140
malus_domestica	MD09G1266200.v1.1 MD17G1262500.v1.1
prunus_persica	Prupe.3G164100_v2.0.a1 Prupe.3G164100_v2.0.a1 Prupe.3G164100_v2.0.a1 Prupe.3G164100_v2.0.a1
pyrus_communis	pycom09g17940 pycom17g26250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	388
AccI	GTMKAC	1 cut(s)	705
AciI	CCGC	3 cut(s)	537, 622, 716
AcsI	RAATTY	4 cut(s)	271, 317, 691, 697
AcyI	GRCGYC	2 cut(s)	431, 726
AdeI	CACNNNGTG	1 cut(s)	341
AfaI	GTAC	2 cut(s)	141, 672
AfeI	AGCGCT	1 cut(s)	634
AfiI	CCNNNNNNNGG	2 cut(s)	25, 446
AgsI	TTSAA	6 cut(s)	23, 117, 181, 551, 690, 697
AjnI	CCWGG	3 cut(s)	426, 610, 624
AjuI	GAANNNNNNNTTGG	2 cut(s)	277, 309
AluBI	AGCT	3 cut(s)	131, 327, 601
AluI	AGCT	3 cut(s)	131, 327, 601
Alw21I	GWGCWC	3 cut(s)	233, 329, 481
Alw26I	GTCTC	2 cut(s)	264, 521
Aor51HI	AGCGCT	1 cut(s)	634
AoxI	GGCC	2 cut(s)	518, 608
ApeKI	GCWGC	5 cut(s)	60, 128, 243, 598, 635
ApoI	RAATTY	4 cut(s)	271, 317, 691, 697
Asp700I	GAANNNNTTC	1 cut(s)	205
AspLEI	GCGC	4 cut(s)	389, 542, 598, 635
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	2 cut(s)	595, 650
AsuNHI	GCTAGC	1 cut(s)	629
AvaII	GGWCC	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	329
Bbv12I	GWGCWC	3 cut(s)	233, 329, 481
BbvI	GCAGC	5 cut(s)	72, 140, 255, 610, 622
BccI	CCATC	1 cut(s)	584
BciT130I	CCWGG	3 cut(s)	428, 612, 626
BcoDI	GTCTC	2 cut(s)	264, 521
BfaI	CTAG	3 cut(s)	377, 467, 630
BfmI	CTRYAG	1 cut(s)	150
BfoI	RGCGCY	1 cut(s)	636
BglI	GCCNNNNNGGC	1 cut(s)	38
BglII	AGATCT	1 cut(s)	748
BisI	GCNGC	6 cut(s)	61, 129, 244, 538, 599, 636
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	6 cut(s)	62, 130, 245, 539, 600, 637
BmcAI	AGTACT	1 cut(s)	141
Bme1390I	CCNGG	3 cut(s)	428, 612, 626
Bme18I	GGWCC	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	3 cut(s)	428, 612, 626
BmsI	GCATC	1 cut(s)	502
BmtI	GCTAGC	1 cut(s)	633
BpmI	CTGGAG	1 cut(s)	164
Bpu1102I	GCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	343
BsaHI	GRCGYC	2 cut(s)	431, 726
BsaI	GGTCTC	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 446
Bse1I	ACTGG	1 cut(s)	147
Bse3DI	GCAATG	3 cut(s)	123, 253, 389
BseBI	CCWGG	3 cut(s)	428, 612, 626
BseLI	CCNNNNNNNGG	2 cut(s)	25, 446
BseMI	GCAATG	3 cut(s)	123, 253, 389
BseMII	CTCAG	4 cut(s)	146, 275, 402, 516
BseNI	ACTGG	1 cut(s)	147
BseXI	GCAGC	5 cut(s)	72, 140, 255, 610, 622
BsgI	GTGCAG	1 cut(s)	726
BshFI	GGCC	2 cut(s)	520, 610
BsiHKAI	GWGCWC	3 cut(s)	233, 329, 481
BslI	CCNNNNNNNGG	2 cut(s)	25, 446
BsmAI	GTCTC	2 cut(s)	264, 521
BsmBI	CGTCTC	1 cut(s)	264
BsnI	GGCC	2 cut(s)	520, 610
Bso31I	GGTCTC	1 cut(s)	521
Bsp1286I	GDGCHC	3 cut(s)	233, 329, 481
Bsp143I	GATC	2 cut(s)	461, 748
Bsp1720I	GCTNAGC	1 cut(s)	132
BspACI	CCGC	3 cut(s)	537, 622, 716
BspANI	GGCC	2 cut(s)	520, 610
BspCNI	CTCAG	4 cut(s)	145, 274, 403, 517
BspHI	TCATGA	1 cut(s)	679
BspLI	GGNNCC	1 cut(s)	147
BspMAI	CTGCAG	1 cut(s)	154
BspOI	GCTAGC	1 cut(s)	633
BspTNI	GGTCTC	1 cut(s)	521
BsrDI	GCAATG	3 cut(s)	123, 253, 389
BsrI	ACTGG	1 cut(s)	147
BssMI	GATC	2 cut(s)	461, 748
BssNI	GRCGYC	2 cut(s)	431, 726
Bst2UI	CCWGG	3 cut(s)	428, 612, 626
Bst4CI	ACNGT	2 cut(s)	219, 308
Bst6I	CTCTTC	1 cut(s)	177
BstACI	GRCGYC	2 cut(s)	431, 726
BstC8I	GCNNGC	5 cut(s)	150, 255, 420, 424, 631
BstDEI	CTNAG	4 cut(s)	132, 261, 411, 525
BstENI	CCTNNNNNAGG	1 cut(s)	444
BstH2I	RGCGCY	1 cut(s)	636
BstHHI	GCGC	4 cut(s)	389, 542, 598, 635
BstKTI	GATC	2 cut(s)	464, 751
BstMAI	GTCTC	2 cut(s)	264, 521
BstMBI	GATC	2 cut(s)	461, 748
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 386, 428, 607, 630, 635
BstNI	CCWGG	3 cut(s)	428, 612, 626
BstSCI	CCNGG	3 cut(s)	426, 610, 624
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	5 cut(s)	72, 140, 255, 610, 622
BstX2I	RGATCY	1 cut(s)	748
BstYI	RGATCY	1 cut(s)	748
BsuRI	GGCC	2 cut(s)	520, 610
BtsIMutI	CAGTG	2 cut(s)	495, 755
Cac8I	GCNNGC	5 cut(s)	150, 255, 420, 424, 631
CciI	TCATGA	1 cut(s)	679
CfoI	GCGC	4 cut(s)	389, 542, 598, 635
Cfr13I	GGNCC	1 cut(s)	449
CseI	GACGC	3 cut(s)	246, 420, 734
Csp6I	GTAC	2 cut(s)	140, 671
CviAII	CATG	1 cut(s)	680
CviQI	GTAC	2 cut(s)	140, 671
DdeI	CTNAG	4 cut(s)	132, 261, 411, 525
DpnI	GATC	2 cut(s)	463, 750
DpnII	GATC	2 cut(s)	461, 748
DraIII	CACNNNGTG	1 cut(s)	341
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
EciI	GGCGGA	1 cut(s)	611
Ecl136II	GAGCTC	1 cut(s)	327
Eco147I	AGGCCT	1 cut(s)	520
Eco24I	GRGCYC	1 cut(s)	329
Eco31I	GGTCTC	1 cut(s)	521
Eco47I	GGWCC	1 cut(s)	449
Eco47III	AGCGCT	1 cut(s)	634
Eco53kI	GAGCTC	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	327
EcoNI	CCTNNNNNAGG	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	3 cut(s)	426, 610, 624
EcoT38I	GRGCYC	1 cut(s)	329
Esp3I	CGTCTC	1 cut(s)	264
FaeI	CATG	1 cut(s)	683
FaiI	YATR	6 cut(s)	10, 12, 561, 563, 681, 731
FatI	CATG	1 cut(s)	679
FblI	GTMKAC	1 cut(s)	705
Fnu4HI	GCNGC	6 cut(s)	61, 129, 244, 538, 599, 636
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	6 cut(s)	61, 129, 244, 538, 599, 636
FspAI	RTGCGCAY	1 cut(s)	388
FspBI	CTAG	3 cut(s)	377, 467, 630
FspI	TGCGCA	1 cut(s)	388
GlaI	GCGC	4 cut(s)	388, 541, 597, 634
GluI	GCNGC	6 cut(s)	61, 129, 244, 538, 599, 636
GsuI	CTGGAG	1 cut(s)	164
HaeII	RGCGCY	1 cut(s)	636
HaeIII	GGCC	2 cut(s)	520, 610
HgaI	GACGC	3 cut(s)	246, 420, 734
HhaI	GCGC	4 cut(s)	389, 542, 598, 635
Hin1I	GRCGYC	2 cut(s)	431, 726
Hin1II	CATG	1 cut(s)	683
Hin6I	GCGC	4 cut(s)	387, 540, 596, 633
HinP1I	GCGC	4 cut(s)	387, 540, 596, 633
HinfI	GANTC	4 cut(s)	47, 206, 280, 676
HphI	GGTGA	2 cut(s)	595, 650
Hpy166II	GTNNAC	2 cut(s)	344, 706
Hpy188I	TCNGA	4 cut(s)	52, 264, 412, 476
Hpy188III	TCNNGA	3 cut(s)	322, 524, 680
Hpy8I	GTNNAC	2 cut(s)	344, 706
HpyAV	CCTTC	1 cut(s)	462
HpyCH4III	ACNGT	2 cut(s)	219, 308
HpyCH4IV	ACGT	1 cut(s)	708
HpyCH4V	TGCA	7 cut(s)	128, 152, 356, 445, 493, 506, 743
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 386, 428, 607, 630, 635
HpyF3I	CTNAG	4 cut(s)	132, 261, 411, 525
HpySE526I	ACGT	1 cut(s)	708
Hsp92I	GRCGYC	2 cut(s)	431, 726
Hsp92II	CATG	1 cut(s)	683
HspAI	GCGC	4 cut(s)	387, 540, 596, 633
Kzo9I	GATC	2 cut(s)	461, 748
LmnI	GCTCC	2 cut(s)	145, 240
Lsp1109I	GCAGC	5 cut(s)	72, 140, 255, 610, 622
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	3 cut(s)	377, 467, 630
MaeII	ACGT	1 cut(s)	708
MaeIII	GTNAC	2 cut(s)	647, 709
MalI	GATC	2 cut(s)	463, 750
MboI	GATC	2 cut(s)	461, 748
MboII	GAAGA	1 cut(s)	164
MflI	RGATCY	1 cut(s)	748
MhlI	GDGCHC	3 cut(s)	233, 329, 481
MluCI	AATT	7 cut(s)	66, 271, 301, 317, 573, 691, 697
MlyI	GAGTC	3 cut(s)	41, 274, 670
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	9 cut(s)	43, 91, 181, 191, 363, 408, 450, 510, 531
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	1 cut(s)	167
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	601
MspR9I	CCNGG	3 cut(s)	428, 612, 626
MvaI	CCWGG	3 cut(s)	428, 612, 626
MwoI	GCNNNNNNNGC	6 cut(s)	38, 386, 428, 607, 630, 635
NdeII	GATC	2 cut(s)	461, 748
NheI	GCTAGC	1 cut(s)	629
NlaIII	CATG	1 cut(s)	683
NlaIV	GGNNCC	1 cut(s)	147
NsbI	TGCGCA	1 cut(s)	388
PagI	TCATGA	1 cut(s)	679
PceI	AGGCCT	1 cut(s)	520
PcsI	WCGNNNNNNNCGW	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	6 cut(s)	62, 130, 245, 539, 600, 637
PleI	GAGTC	3 cut(s)	41, 274, 670
PpsI	GAGTC	3 cut(s)	41, 274, 670
PpuMI	RGGWCCY	1 cut(s)	449
Psp124BI	GAGCTC	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	449
Psp6I	CCWGG	3 cut(s)	426, 610, 624
PspGI	CCWGG	3 cut(s)	426, 610, 624
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	449
PspPPI	RGGWCCY	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	748
PvuII	CAGCTG	1 cut(s)	601
RsaI	GTAC	2 cut(s)	141, 672
RsaNI	GTAC	2 cut(s)	140, 671
RseI	CAYNNNNRTG	1 cut(s)	351
SacI	GAGCTC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	6 cut(s)	61, 129, 244, 538, 599, 636
Sau3AI	GATC	2 cut(s)	461, 748
Sau96I	GGNCC	1 cut(s)	449
ScaI	AGTACT	1 cut(s)	141
SchI	GAGTC	3 cut(s)	41, 274, 670
ScrFI	CCNGG	3 cut(s)	428, 612, 626
SduI	GDGCHC	3 cut(s)	233, 329, 481
SetI	ASST	8 cut(s)	21, 83, 133, 329, 454, 472, 603, 711
SfaNI	GCATC	1 cut(s)	502
SfcI	CTRYAG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	7 cut(s)	66, 271, 301, 317, 573, 691, 697
SseBI	AGGCCT	1 cut(s)	520
SsiI	CCGC	3 cut(s)	537, 622, 716
SspMI	CTAG	3 cut(s)	377, 467, 630
SstI	GAGCTC	1 cut(s)	329
StuI	AGGCCT	1 cut(s)	520
StyD4I	CCNGG	3 cut(s)	426, 610, 624
TaaI	ACNGT	2 cut(s)	219, 308
TaiI	ACGT	1 cut(s)	711
TaqI	TCGA	2 cut(s)	209, 310
TasI	AATT	7 cut(s)	66, 271, 301, 317, 573, 691, 697
TatI	WGTACW	2 cut(s)	139, 670
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TscAI	CASTG	2 cut(s)	495, 762
TseI	GCWGC	5 cut(s)	60, 128, 243, 598, 635
TspDTI	ATGAA	3 cut(s)	17, 444, 696
TspRI	CASTG	2 cut(s)	495, 762
VpaK11BI	GGWCC	1 cut(s)	449
XagI	CCTNNNNNAGG	1 cut(s)	444
XapI	RAATTY	4 cut(s)	271, 317, 691, 697
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	705
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	3 cut(s)	377, 467, 630
ZrmI	AGTACT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.