Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0018722

Physical Location & Seq

Genomic Coordinates Reverse (-)

18330107 .. 18333335

Gene Structure 3229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G164100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAACACATACTTTGACCTTGAAGTGGAAGCCTCCTCAGCAAATGACTCTGATGTTAGCAGCCAAGTTGCTTCTAACATCTCCATCCAAGAAACATCTGCTAATACCTCCAATGACAGCGCCGCCAACTCCACAAATCCCATTGCAGCTCAACAAGCGTTGGAGCCTGTTTCCCTTGACTTAACTCTTAGCTTCAGTAATGAGGACTTAGTGGGAAGGGATTCTGTAGGATTCTCATTGTCAAGCACAAGTGAGAGCAGCAATGAACCTGCATCTCAAAACACAACAGCAGCCACTCCAAGACTTTTCTCTTGCAATTACTGTCAATGCAAGTTCTTGAGCTCACAGGCTCTTGGTGGTCACCAGAATGCGCATAAGAAAGAAAGAACGCTGGCAAAGCGCGCTTTACGAATGAGTATTTTCTCTGAGAGATACACGAGCATAGCGTCGTTGCCTCTGCACGGATCTTCTTTCAGGTCTCTAGGAATAGAAGCACACTCATCAGTGCATCAAGGGTTTGCACCACCAGTGAGGCCTGCTGAGATTGGAAGCAGTGCAAGATTTGAACAGGGGTATTTGGGGGTACCCATTTTCTTGGTGGATGATGGGGCTGAGCTGTTATGGCCTGGTAGTTTCCGTCGGGCTGCTGAGACAAGTAACACTCATCCAAGTTTTGTACTGACTCATGAAAGTTCAAATTCAAATTTTGTAGAGGTCACACCGCCCGTGGACGTAGAGACCAAGTCTACACCAGATCTCACACTGAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

27.55

Weight (kDa)

5.02

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66140
malus_domestica	MD09G1266200.v1.1 MD17G1262500.v1.1
prunus_persica	Prupe.3G164100_v2.0.a1 Prupe.3G164100_v2.0.a1 Prupe.3G164100_v2.0.a1 Prupe.3G164100_v2.0.a1
pyrus_communis	pycom09g17940 pycom17g26250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	372
Acc36I	ACCTGC	1 cut(s)	277
Acc65I	GGTACC	1 cut(s)	583
AccB1I	GGYRCC	1 cut(s)	583
AccI	GTMKAC	1 cut(s)	746
AccII	CGCG	1 cut(s)	402
AciI	CCGC	2 cut(s)	123, 722
AclWI	GGATC	1 cut(s)	472
AcsI	RAATTY	2 cut(s)	697, 703
AcuI	CTGAAG	1 cut(s)	178
AfaI	GTAC	2 cut(s)	585, 678
AfiI	CCNNNNNNNGG	2 cut(s)	25, 461
AgsI	TTSAA	4 cut(s)	23, 566, 696, 702
AjnI	CCWGG	1 cut(s)	625
AluBI	AGCT	4 cut(s)	149, 192, 342, 616
AluI	AGCT	4 cut(s)	149, 192, 342, 616
Alw21I	GWGCWC	1 cut(s)	344
Alw26I	GTCTC	3 cut(s)	483, 644, 731
AlwI	GGATC	1 cut(s)	472
AoxI	GGCC	2 cut(s)	533, 623
ApeKI	GCWGC	5 cut(s)	60, 146, 258, 290, 644
ApoI	RAATTY	2 cut(s)	697, 703
Asp700I	GAANNNNTTC	1 cut(s)	220
Asp718I	GGTACC	1 cut(s)	583
AspLEI	GCGC	4 cut(s)	122, 373, 402, 404
AsuHPI	GGTGA	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	344
BauI	CACGAG	1 cut(s)	436
Bbv12I	GWGCWC	1 cut(s)	344
BbvCI	CCTCAGC	1 cut(s)	37
BbvI	GCAGC	5 cut(s)	72, 158, 270, 302, 631
BccI	CCATC	2 cut(s)	92, 599
BciT130I	CCWGG	1 cut(s)	627
BcoDI	GTCTC	3 cut(s)	483, 644, 731
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	225
BfoI	RGCGCY	1 cut(s)	123
BfuAI	ACCTGC	1 cut(s)	277
BglII	AGATCT	1 cut(s)	754
BisI	GCNGC	6 cut(s)	61, 123, 147, 259, 291, 645
BlpI	GCTNAGC	1 cut(s)	612
BlsI	GCNGC	6 cut(s)	62, 124, 148, 260, 292, 646
Bme1390I	CCNGG	1 cut(s)	627
BmiI	GGNNCC	2 cut(s)	165, 585
BmrFI	CCNGG	1 cut(s)	627
BmsI	GCATC	2 cut(s)	281, 517
Bpu10I	CCTNAGC	1 cut(s)	37
Bpu1102I	GCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	358
BsaI	GGTCTC	2 cut(s)	483, 731
BsaJI	CCNNGG	1 cut(s)	726
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 461
Bse1I	ACTGG	1 cut(s)	527
Bse3DI	GCAATG	2 cut(s)	141, 268
BseBI	CCWGG	1 cut(s)	627
BseDI	CCNNGG	1 cut(s)	726
BseGI	GGATG	3 cut(s)	84, 607, 664
BseLI	CCNNNNNNNGG	2 cut(s)	25, 461
BseMI	GCAATG	2 cut(s)	141, 268
BseMII	CTCAG	5 cut(s)	51, 417, 531, 603, 639
BseNI	ACTGG	1 cut(s)	527
BsePI	GCGCGC	1 cut(s)	400
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	5 cut(s)	72, 158, 270, 302, 631
BsgI	GTGCAG	1 cut(s)	443
Bsh1236I	CGCG	1 cut(s)	402
BshFI	GGCC	2 cut(s)	535, 625
BshNI	GGYRCC	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	25, 461
BsmAI	GTCTC	3 cut(s)	483, 644, 731
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	2 cut(s)	535, 625
Bso31I	GGTCTC	2 cut(s)	483, 731
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	464, 754
Bsp1720I	GCTNAGC	1 cut(s)	612
BspACI	CCGC	2 cut(s)	123, 722
BspANI	GGCC	2 cut(s)	535, 625
BspCNI	CTCAG	5 cut(s)	50, 418, 532, 604, 640
BspFNI	CGCG	1 cut(s)	402
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	2 cut(s)	165, 585
BspMI	ACCTGC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	472
BspT107I	GGYRCC	1 cut(s)	583
BspTNI	GGTCTC	2 cut(s)	483, 731
BsrDI	GCAATG	2 cut(s)	141, 268
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	1 cut(s)	726
BssHII	GCGCGC	1 cut(s)	400
BssMI	GATC	2 cut(s)	464, 754
BssSI	CACGAG	1 cut(s)	436
Bst2BI	CACGAG	1 cut(s)	436
Bst2UI	CCWGG	1 cut(s)	627
Bst4CI	ACNGT	1 cut(s)	323
BstC8I	GCNNGC	3 cut(s)	393, 402, 537
BstDEI	CTNAG	7 cut(s)	37, 188, 208, 426, 540, 612, 648
BstDSI	CCRYGG	1 cut(s)	726
BstEII	GGTNACC	1 cut(s)	359
BstF5I	GGATG	3 cut(s)	84, 607, 664
BstFNI	CGCG	1 cut(s)	402
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	4 cut(s)	122, 373, 402, 404
BstKTI	GATC	2 cut(s)	467, 757
BstMAI	GTCTC	3 cut(s)	483, 644, 731
BstMBI	GATC	2 cut(s)	464, 754
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 155, 397, 401, 622
BstNI	CCWGG	1 cut(s)	627
BstPI	GGTNACC	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	625
BstSFI	CTRYAG	1 cut(s)	225
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	5 cut(s)	72, 158, 270, 302, 631
BstX2I	RGATCY	2 cut(s)	464, 754
BstXI	CCANNNNNNTGG	1 cut(s)	595
BstYI	RGATCY	2 cut(s)	464, 754
BsuRI	GGCC	2 cut(s)	535, 625
BtgI	CCRYGG	1 cut(s)	726
BtsCI	GGATG	3 cut(s)	84, 607, 664
BtsI	GCAGTG	1 cut(s)	559
BtsIMutI	CAGTG	4 cut(s)	510, 534, 559, 761
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	3 cut(s)	393, 402, 537
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	4 cut(s)	122, 373, 402, 404
CseI	GACGC	1 cut(s)	435
Csp6I	GTAC	2 cut(s)	584, 677
CviAII	CATG	1 cut(s)	686
CviQI	GTAC	2 cut(s)	584, 677
DdeI	CTNAG	7 cut(s)	37, 188, 208, 426, 540, 612, 648
DpnI	GATC	2 cut(s)	466, 756
DpnII	GATC	2 cut(s)	464, 754
Ecl136II	GAGCTC	1 cut(s)	342
Eco147I	AGGCCT	1 cut(s)	535
Eco24I	GRGCYC	1 cut(s)	344
Eco31I	GGTCTC	2 cut(s)	483, 731
Eco53kI	GAGCTC	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	178
Eco91I	GGTNACC	1 cut(s)	359
EcoICRI	GAGCTC	1 cut(s)	342
EcoO65I	GGTNACC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	625
EcoT38I	GRGCYC	1 cut(s)	344
FaeI	CATG	1 cut(s)	689
FaiI	YATR	5 cut(s)	10, 375, 443, 622, 687
FatI	CATG	1 cut(s)	685
FblI	GTMKAC	1 cut(s)	746
Fnu4HI	GCNGC	6 cut(s)	61, 123, 147, 259, 291, 645
FokI	GGATG	3 cut(s)	71, 614, 651
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	6 cut(s)	61, 123, 147, 259, 291, 645
FspAI	RTGCGCAY	1 cut(s)	372
FspBI	CTAG	1 cut(s)	482
FspI	TGCGCA	1 cut(s)	372
GlaI	GCGC	4 cut(s)	121, 372, 401, 403
GluI	GCNGC	6 cut(s)	61, 123, 147, 259, 291, 645
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	535, 625
HgaI	GACGC	1 cut(s)	435
HhaI	GCGC	4 cut(s)	122, 373, 402, 404
Hin1II	CATG	1 cut(s)	689
Hin6I	GCGC	4 cut(s)	120, 371, 400, 402
HinP1I	GCGC	4 cut(s)	120, 371, 400, 402
HinfI	GANTC	4 cut(s)	47, 221, 231, 682
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	2 cut(s)	730, 747
Hpy188I	TCNGA	2 cut(s)	52, 427
Hpy188III	TCNNGA	2 cut(s)	337, 686
Hpy8I	GTNNAC	2 cut(s)	730, 747
Hpy99I	CGWCG	2 cut(s)	451, 642
HpyAV	CCTTC	1 cut(s)	210
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	1 cut(s)	732
HpyCH4V	TGCA	8 cut(s)	146, 272, 315, 330, 460, 508, 521, 557
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 155, 397, 401, 622
HpyF3I	CTNAG	7 cut(s)	37, 188, 208, 426, 540, 612, 648
HpySE526I	ACGT	1 cut(s)	732
Hsp92II	CATG	1 cut(s)	689
HspAI	GCGC	4 cut(s)	120, 371, 400, 402
KpnI	GGTACC	1 cut(s)	587
Kzo9I	GATC	2 cut(s)	464, 754
LmnI	GCTCC	1 cut(s)	163
Lsp1109I	GCAGC	5 cut(s)	72, 158, 270, 302, 631
LweI	GCATC	2 cut(s)	281, 517
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	1 cut(s)	732
MaeIII	GTNAC	3 cut(s)	359, 656, 715
MalI	GATC	2 cut(s)	466, 756
MboI	GATC	2 cut(s)	464, 754
MboII	GAAGA	1 cut(s)	459
MflI	RGATCY	2 cut(s)	464, 754
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	3 cut(s)	316, 697, 703
MlyI	GAGTC	2 cut(s)	41, 676
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	7 cut(s)	43, 46, 118, 196, 465, 525, 706
MroXI	GAANNNNTTC	1 cut(s)	220
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	366
MspR9I	CCNGG	1 cut(s)	627
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	627
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	5 cut(s)	38, 155, 397, 401, 622
NdeII	GATC	2 cut(s)	464, 754
NlaIII	CATG	1 cut(s)	689
NlaIV	GGNNCC	2 cut(s)	165, 585
NmuCI	GTSAC	2 cut(s)	359, 715
NsbI	TGCGCA	1 cut(s)	372
PagI	TCATGA	1 cut(s)	685
PauI	GCGCGC	1 cut(s)	400
PceI	AGGCCT	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	1 cut(s)	443
PctI	GAATGC	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	221, 231
PflFI	GACNNNGTC	1 cut(s)	742
PkrI	GCNGC	6 cut(s)	62, 124, 148, 260, 292, 646
PleI	GAGTC	2 cut(s)	41, 676
PpsI	GAGTC	2 cut(s)	41, 676
Psp124BI	GAGCTC	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	625
PspEI	GGTNACC	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	625
PspN4I	GGNNCC	2 cut(s)	165, 585
PsuI	RGATCY	2 cut(s)	464, 754
PsyI	GACNNNGTC	1 cut(s)	742
PteI	GCGCGC	1 cut(s)	400
RsaI	GTAC	2 cut(s)	585, 678
RsaNI	GTAC	2 cut(s)	584, 677
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	6 cut(s)	61, 123, 147, 259, 291, 645
Sau3AI	GATC	2 cut(s)	464, 754
SchI	GAGTC	2 cut(s)	41, 676
ScrFI	CCNGG	1 cut(s)	627
SduI	GDGCHC	1 cut(s)	344
SfaNI	GCATC	2 cut(s)	281, 517
SfcI	CTRYAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	3 cut(s)	316, 697, 703
SseBI	AGGCCT	1 cut(s)	535
SsiI	CCGC	2 cut(s)	123, 722
SspMI	CTAG	1 cut(s)	482
SstI	GAGCTC	1 cut(s)	344
StuI	AGGCCT	1 cut(s)	535
StyD4I	CCNGG	1 cut(s)	625
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	1 cut(s)	735
TasI	AATT	3 cut(s)	316, 697, 703
TatI	WGTACW	1 cut(s)	676
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	221, 231
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	4 cut(s)	510, 534, 559, 768
TseFI	GTSAC	2 cut(s)	359, 715
TseI	GCWGC	5 cut(s)	60, 146, 258, 290, 644
Tsp45I	GTSAC	2 cut(s)	359, 715
TspDTI	ATGAA	3 cut(s)	17, 279, 702
TspGWI	ACGGA	2 cut(s)	477, 626
TspRI	CASTG	4 cut(s)	510, 534, 559, 768
Tth111I	GACNNNGTC	1 cut(s)	742
XapI	RAATTY	2 cut(s)	697, 703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	746
XmnI	GAANNNNTTC	1 cut(s)	220
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.