Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0018722

Physical Location & Seq

Genomic Coordinates Reverse (-)

18527392 .. 18528186

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAACACATATATTGACCTTGAAGTGGAAGCCTCATCGGCAAATGACTCTGATATTAGTAGCCAAGTTGCTTCTAACATCTCCATCCAAGATACATCTGCTAATACCTCCAAAGACAGCGCGGCCAACTCTTTCCATTTTTCAAATCTCAATGGAGCTCATCAAGGATTGGGTCCTGCAGTTTCCCTTGATTTGACACTTAGCTTCAATAAAGAGGACTTAGGGGGAAGGGATTCGACAGGACTCTCATTGTCGAGCACGAATGAGAGCAGCAATGAACCTGCATCTCAGAACATAACATCACCCGGTCCAAGACTTTTTTCTTGCAATTACTGTCAATGCAAATTCTTGAGCTCACAGGCGCTTGGTGGACACCAAAATGCACACAAGAAAGAAAGGACGCTGGCAAAACGCGCTATGAGAATGAGTATTTTCTCCGAGAGCTATGCAAGTCCGGCATCTTTGCCTCTTCACGGATCTTCATTCAGATCACTAGGTATCAGAGCACACTCATCAGTGCATCAAGGGTTTGCACCGCCAGTGAGGCCTGCCGAGATTGGGAGCGGTGCACGATCTGAACACGGGTACATGGGGGTACCAATTTTCTTCGTGGATGATGGGGCGGAGCTGTTATGGCCTGGTAGTTTCCGCCAGCCTAGCGCTGCGGAGACAAGTAACTCTACTCACCCAAGTTTTGTACTGACTCATGAAAGTTCAAATTTGAATTTTGCAGAGGTGACACCGCCCGTGGACGTCATAGACAACTCTGCACCAGATCTCACACTGAAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

28.05

Weight (kDa)

5.5

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66140
malus_domestica	MD09G1266200.v1.1 MD17G1262500.v1.1
prunus_persica	Prupe.3G164100_v2.0.a1 Prupe.3G164100_v2.0.a1 Prupe.3G164100_v2.0.a1 Prupe.3G164100_v2.0.a1
pyrus_communis	pycom09g17940 pycom17g26250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	756
Acc36I	ACCTGC	1 cut(s)	289
Acc65I	GGTACC	1 cut(s)	595
AccB1I	GGYRCC	1 cut(s)	595
AccBSI	CCGCTC	1 cut(s)	564
AccII	CGCG	2 cut(s)	122, 414
AciI	CCGC	7 cut(s)	122, 536, 564, 623, 649, 665, 743
AclWI	GGATC	1 cut(s)	484
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	3 cut(s)	344, 718, 724
AcyI	GRCGYC	1 cut(s)	753
AfaI	GTAC	3 cut(s)	587, 597, 699
AfeI	AGCGCT	1 cut(s)	661
AfiI	CCNNNNNNNGG	3 cut(s)	25, 473, 558
AgsI	TTSAA	5 cut(s)	23, 144, 208, 717, 724
AjnI	CCWGG	1 cut(s)	637
AjuI	GAANNNNNNNTTGG	2 cut(s)	304, 336
AluBI	AGCT	6 cut(s)	158, 204, 354, 444, 628, 790
AluI	AGCT	6 cut(s)	158, 204, 354, 444, 628, 790
Alw21I	GWGCWC	5 cut(s)	160, 260, 356, 508, 571
Alw26I	GTCTC	1 cut(s)	662
Alw44I	GTGCAC	1 cut(s)	567
AlwI	GGATC	1 cut(s)	484
Aor51HI	AGCGCT	1 cut(s)	661
AoxI	GGCC	3 cut(s)	123, 545, 635
ApaLI	GTGCAC	1 cut(s)	567
ApeKI	GCWGC	2 cut(s)	270, 662
ApoI	RAATTY	3 cut(s)	344, 718, 724
Asp700I	GAANNNNTTC	1 cut(s)	232
Asp718I	GGTACC	1 cut(s)	595
AspLEI	GCGC	4 cut(s)	122, 364, 416, 662
AspS9I	GGNCC	2 cut(s)	173, 308
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	3 cut(s)	294, 677, 748
AvaII	GGWCC	2 cut(s)	173, 308
BaeGI	GKGCMC	1 cut(s)	571
BanI	GGYRCC	1 cut(s)	595
BanII	GRGCYC	2 cut(s)	160, 356
Bbv12I	GWGCWC	5 cut(s)	160, 260, 356, 508, 571
BbvI	GCAGC	2 cut(s)	282, 649
BccI	CCATC	2 cut(s)	92, 611
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciT130I	CCWGG	1 cut(s)	639
BcnI	CCSGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	662
BfaI	CTAG	2 cut(s)	494, 657
BfmI	CTRYAG	1 cut(s)	177
BfoI	RGCGCY	2 cut(s)	365, 663
BfuAI	ACCTGC	1 cut(s)	289
BglI	GCCNNNNNGGC	2 cut(s)	38, 544
BglII	AGATCT	1 cut(s)	775
BisI	GCNGC	3 cut(s)	123, 271, 663
BlsI	GCNGC	3 cut(s)	124, 272, 664
Bme1390I	CCNGG	2 cut(s)	306, 639
Bme18I	GGWCC	2 cut(s)	173, 308
BmgT120I	GGNCC	2 cut(s)	173, 308
BmiI	GGNNCC	2 cut(s)	174, 597
BmrFI	CCNGG	2 cut(s)	306, 639
BmsI	GCATC	3 cut(s)	293, 467, 529
BpuEI	CTTGAG	1 cut(s)	370
BpuMI	CCSGG	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	753
BsaJI	CCNNGG	1 cut(s)	747
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 473, 558
Bse1I	ACTGG	1 cut(s)	539
Bse3DI	GCAATG	1 cut(s)	280
BseBI	CCWGG	1 cut(s)	639
BseDI	CCNNGG	1 cut(s)	747
BseGI	GGATG	2 cut(s)	84, 619
BseLI	CCNNNNNNNGG	3 cut(s)	25, 473, 558
BseMI	GCAATG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	539
BseSI	GKGCMC	1 cut(s)	571
BseXI	GCAGC	2 cut(s)	282, 649
BsgI	GTGCAG	1 cut(s)	753
Bsh1236I	CGCG	2 cut(s)	122, 414
BshFI	GGCC	3 cut(s)	125, 547, 637
BshNI	GGYRCC	1 cut(s)	595
BsiHKAI	GWGCWC	5 cut(s)	160, 260, 356, 508, 571
BsiSI	CCGG	2 cut(s)	306, 455
BslI	CCNNNNNNNGG	3 cut(s)	25, 473, 558
BsmAI	GTCTC	1 cut(s)	662
BsnI	GGCC	3 cut(s)	125, 547, 637
Bsp1286I	GDGCHC	5 cut(s)	160, 260, 356, 508, 571
Bsp143I	GATC	4 cut(s)	476, 488, 572, 775
BspACI	CCGC	7 cut(s)	122, 536, 564, 623, 649, 665, 743
BspANI	GGCC	3 cut(s)	125, 547, 637
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	2 cut(s)	122, 414
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	2 cut(s)	174, 597
BspMAI	CTGCAG	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	289
BspPI	GGATC	1 cut(s)	484
BspT107I	GGYRCC	1 cut(s)	595
BsrBI	CCGCTC	1 cut(s)	564
BsrDI	GCAATG	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	539
BssECI	CCNNGG	1 cut(s)	747
BssMI	GATC	4 cut(s)	476, 488, 572, 775
BssNI	GRCGYC	1 cut(s)	753
Bst2UI	CCWGG	1 cut(s)	639
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	474
BstACI	GRCGYC	1 cut(s)	753
BstC8I	GCNNGC	3 cut(s)	405, 549, 653
BstDEI	CTNAG	3 cut(s)	200, 220, 288
BstDSI	CCRYGG	1 cut(s)	747
BstF5I	GGATG	2 cut(s)	84, 619
BstFNI	CGCG	2 cut(s)	122, 414
BstH2I	RGCGCY	2 cut(s)	365, 663
BstHHI	GCGC	4 cut(s)	122, 364, 416, 662
BstKTI	GATC	4 cut(s)	479, 491, 575, 778
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	4 cut(s)	476, 488, 572, 775
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 413, 455, 544, 634, 657
BstNI	CCWGG	1 cut(s)	639
BstSCI	CCNGG	2 cut(s)	304, 637
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	571
BstUI	CGCG	2 cut(s)	122, 414
BstV1I	GCAGC	2 cut(s)	282, 649
BstX2I	RGATCY	2 cut(s)	476, 775
BstYI	RGATCY	2 cut(s)	476, 775
BsuRI	GGCC	3 cut(s)	125, 547, 637
BtgI	CCRYGG	1 cut(s)	747
BtsCI	GGATG	2 cut(s)	84, 619
BtsIMutI	CAGTG	3 cut(s)	522, 546, 782
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	3 cut(s)	405, 549, 653
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	4 cut(s)	122, 364, 416, 662
Cfr13I	GGNCC	2 cut(s)	173, 308
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	3 cut(s)	586, 596, 698
CviAII	CATG	2 cut(s)	589, 707
CviQI	GTAC	3 cut(s)	586, 596, 698
DdeI	CTNAG	3 cut(s)	200, 220, 288
DpnI	GATC	4 cut(s)	478, 490, 574, 777
DpnII	GATC	4 cut(s)	476, 488, 572, 775
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
EciI	GGCGGA	2 cut(s)	638, 638
Ecl136II	GAGCTC	2 cut(s)	158, 354
Eco147I	AGGCCT	1 cut(s)	547
Eco24I	GRGCYC	2 cut(s)	160, 356
Eco47I	GGWCC	2 cut(s)	173, 308
Eco47III	AGCGCT	1 cut(s)	661
Eco53kI	GAGCTC	2 cut(s)	158, 354
EcoICRI	GAGCTC	2 cut(s)	158, 354
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	637
EcoT38I	GRGCYC	2 cut(s)	160, 356
FaeI	CATG	2 cut(s)	592, 710
FatI	CATG	2 cut(s)	588, 706
Fnu4HI	GCNGC	3 cut(s)	123, 271, 663
FokI	GGATG	2 cut(s)	71, 626
FriOI	GRGCYC	2 cut(s)	160, 356
Fsp4HI	GCNGC	3 cut(s)	123, 271, 663
FspBI	CTAG	2 cut(s)	494, 657
GlaI	GCGC	4 cut(s)	121, 363, 415, 661
GluI	GCNGC	3 cut(s)	123, 271, 663
HaeII	RGCGCY	2 cut(s)	365, 663
HaeIII	GGCC	3 cut(s)	125, 547, 637
HapII	CCGG	2 cut(s)	306, 455
HgaI	GACGC	1 cut(s)	409
HhaI	GCGC	4 cut(s)	122, 364, 416, 662
Hin1I	GRCGYC	1 cut(s)	753
Hin1II	CATG	2 cut(s)	592, 710
Hin6I	GCGC	4 cut(s)	120, 362, 414, 660
HinP1I	GCGC	4 cut(s)	120, 362, 414, 660
HinfI	GANTC	4 cut(s)	47, 233, 243, 703
HpaII	CCGG	2 cut(s)	306, 455
HphI	GGTGA	3 cut(s)	294, 677, 748
Hpy166II	GTNNAC	3 cut(s)	371, 569, 751
Hpy188I	TCNGA	6 cut(s)	52, 291, 439, 488, 503, 577
Hpy188III	TCNNGA	2 cut(s)	349, 707
Hpy8I	GTNNAC	3 cut(s)	371, 569, 751
HpyAV	CCTTC	1 cut(s)	222
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	753
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 413, 455, 544, 634, 657
HpyF3I	CTNAG	3 cut(s)	200, 220, 288
HpySE526I	ACGT	1 cut(s)	753
Hsp92I	GRCGYC	1 cut(s)	753
Hsp92II	CATG	2 cut(s)	592, 710
HspAI	GCGC	4 cut(s)	120, 362, 414, 660
KpnI	GGTACC	1 cut(s)	599
Kzo9I	GATC	4 cut(s)	476, 488, 572, 775
LmnI	GCTCC	3 cut(s)	155, 561, 625
Lsp1109I	GCAGC	2 cut(s)	282, 649
LweI	GCATC	3 cut(s)	293, 467, 529
MaeI	CTAG	2 cut(s)	494, 657
MaeII	ACGT	1 cut(s)	753
MaeIII	GTNAC	2 cut(s)	674, 736
MalI	GATC	4 cut(s)	478, 490, 574, 777
MbiI	CCGCTC	1 cut(s)	564
MboI	GATC	4 cut(s)	476, 488, 572, 775
MboII	GAAGA	3 cut(s)	461, 471, 598
MflI	RGATCY	2 cut(s)	476, 775
MhlI	GDGCHC	5 cut(s)	160, 260, 356, 508, 571
MluCI	AATT	5 cut(s)	328, 344, 600, 718, 724
MlyI	GAGTC	3 cut(s)	41, 237, 697
MnlI	CCTC	6 cut(s)	43, 118, 208, 477, 537, 727
MroXI	GAANNNNTTC	1 cut(s)	232
MslI	CAYNNNNRTG	1 cut(s)	378
MspI	CCGG	2 cut(s)	306, 455
MspR9I	CCNGG	2 cut(s)	306, 639
MvaI	CCWGG	1 cut(s)	639
MvnI	CGCG	2 cut(s)	122, 414
MwoI	GCNNNNNNNGC	6 cut(s)	38, 413, 455, 544, 634, 657
NciI	CCSGG	1 cut(s)	306
NdeII	GATC	4 cut(s)	476, 488, 572, 775
NlaIII	CATG	2 cut(s)	592, 710
NlaIV	GGNNCC	2 cut(s)	174, 597
NmeAIII	GCCGAG	1 cut(s)	577
NmuCI	GTSAC	1 cut(s)	736
PagI	TCATGA	1 cut(s)	706
PceI	AGGCCT	1 cut(s)	547
PdmI	GAANNNNTTC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	3 cut(s)	124, 272, 664
PleI	GAGTC	3 cut(s)	41, 237, 697
PpsI	GAGTC	3 cut(s)	41, 237, 697
PpuMI	RGGWCCY	1 cut(s)	173
Psp124BI	GAGCTC	2 cut(s)	160, 356
Psp5II	RGGWCCY	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	2 cut(s)	174, 597
PspPI	GGNCC	2 cut(s)	173, 308
PspPPI	RGGWCCY	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	2 cut(s)	476, 775
RsaI	GTAC	3 cut(s)	587, 597, 699
RsaNI	GTAC	3 cut(s)	586, 596, 698
RseI	CAYNNNNRTG	1 cut(s)	378
SacI	GAGCTC	2 cut(s)	160, 356
SatI	GCNGC	3 cut(s)	123, 271, 663
Sau3AI	GATC	4 cut(s)	476, 488, 572, 775
Sau96I	GGNCC	2 cut(s)	173, 308
SchI	GAGTC	3 cut(s)	41, 237, 697
ScrFI	CCNGG	2 cut(s)	306, 639
SduI	GDGCHC	5 cut(s)	160, 260, 356, 508, 571
SfaNI	GCATC	3 cut(s)	293, 467, 529
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	2 cut(s)	173, 308
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
Sse9I	AATT	5 cut(s)	328, 344, 600, 718, 724
SseBI	AGGCCT	1 cut(s)	547
SsiI	CCGC	7 cut(s)	122, 536, 564, 623, 649, 665, 743
SspMI	CTAG	2 cut(s)	494, 657
SstI	GAGCTC	2 cut(s)	160, 356
StuI	AGGCCT	1 cut(s)	547
StyD4I	CCNGG	2 cut(s)	304, 637
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	2 cut(s)	236, 254
TasI	AATT	5 cut(s)	328, 344, 600, 718, 724
TatI	WGTACW	1 cut(s)	697
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	233
TscAI	CASTG	3 cut(s)	522, 546, 789
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	2 cut(s)	270, 662
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	4 cut(s)	17, 291, 471, 723
TspGWI	ACGGA	1 cut(s)	489
TspRI	CASTG	3 cut(s)	522, 546, 789
VneI	GTGCAC	1 cut(s)	567
VpaK11BI	GGWCC	2 cut(s)	173, 308
XapI	RAATTY	3 cut(s)	344, 718, 724
XmnI	GAANNNNTTC	1 cut(s)	232
XspI	CTAG	2 cut(s)	494, 657
ZraI	GACGTC	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.