MD09G1282500.v1.1

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0019763
Physical Location & Seq
Forward (+)
35977063 .. 35979668
2606 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1282500.v1.1.491

Sequence Viewer

Length: 1626 bp
ATGCATAGTTTGTTTGTTTTGTTCTCTCTTTTTGAGAGTTTGATTGCAAGAAGAGGACCTAGAGAGAGGAAAAAAAACGTAGCAAAAATGGAAGCCTTCCCTCTCTGCATGATGATTGCTTTGTTATCAGTTGCTGCATATTTCTTCATCACTCGTCTTGTCCACGGCGGCAAATATGAGAATTGGAAAAACTCCCCGCCAGGACCTGTTGGATGGCCGATACTCGGCAACCTTCTTCAACTGAGAAGCAGCCAAATACATGAACACTTGTTTAAGTTATCCAAAATTCATGGCCCGCTCTTTAGCCTGAAATTGGGTCCAAAGCCGGTCATTGTGGCAGCTTCGCCGGAAATGGCACGCATTATCCTCAAGGAACAGGAGGCTGTTTTCTCCAATCATGTCGCCAACGAGACCTCCCTAGTCATGTCATATGATGCGACCTCCCTTGTATATTCTCCGATGGGTACACGATGGAGAGTGCTCAGAAGAATATTGAATGAAAATGTCTTCTCTACTAGAGCCCTTGACAATTTTACACCACTTCGCAAGCAAAAGGTCCATGGATTACTGAAGCAGCTCTACTCAGCTTCTTCGTCAAAGAATCCGGTGAACATTGGAGAGTGGGTTTTCATCACCGTAGCCAACATTACAAGTAACCTTACATGCAGTAAGAGCCTTTTTGAATACACAACAAAGGAAGGGAGAGAAATGAAAGAATCATTAAGAGAATTAATAAAACTTCTTGGCACGGGAAATGTTGCTGATTTCTTCCCATTATTCAAGCCCTTTGATCCTCAAGGGCTCAAGCGGAGAACATTGGAGATCTTTTGGAAATATGATGCTTCGTATGAGAAACTTATTGACGAGAGGTTGAAAGAGAGGGAAATTGGAATCAACAATAATACTAAGAAGGAGAAAGGGGACATGTTAGATGCATTGTTGAACTATAGAAGTGATAAAGATGTTGACCTGAGAACGCTTTCTAGAAACATGATCAAAAGCTTGCTTTCGGACATGTTCATTGCAAGCACGGAGACAAGCACAAGCACTGTTGAGTGGGGAATGGCAGAGATCCTAAAAAACTCTGATGTACACAAGAAAATAGTTCTGGAATTGGACCAAGTTGTTGGAAAGGACAGGTTTGTTGAAGAAAGCGACATTGCGAATTTGCCTTACCTTCAAGCAGCAGTGAAAGAAGTTTTCCGACTCCACCCAGCAGCCCCACTCATTACTCGTCGCTCATACGAGGCTTGTGAGGTTTCTGGGTATCATTTTCCTAAGGATTGCGTTGCGGTGGTGAACATTTGGGGGATGGCTAGAGATCCAAGCATTTGGGAAGAGCCTTGCAAATTCAAACCAGAAAGGTTTATTGGTTCGAAGATTGATGTGAAAGGCCAAGACTTCAATCTACTGCCATTTGGGTGTGGGAAAAGGATCTGTGTAGGATGGCCGCTTGCTCATCGCACGGTGCAATTTTACTTGGCAGCATTTCTCCATGCCTTTGAGTGGGAATGCCCTCCTGAAGTCGTGGACAATATGGAAGAATTTGTTGGGATTACAATTCAAAAGGCCAAGAGTATCATCGCCATTCCCAAACCTAGACTCTCAACTTCTGTTTACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

542

Amino Acids

61.69

Weight (kDa)

9.17

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 66 - 521 4.5e-99 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019763)

Species Orthologous Gene IDs
malus_domestica MD03G1101200.v1.1 MD03G1101800.v1.1 MD09G1282400.v1.1 MD09G1282500.v1.1
prunus_persica Prupe.8G008200_v2.0.a1
pyrus_communis pycom09g19040 pycom17g27110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 298
AciI CCGC 6 cut(s) 168, 197, 296, 808, 1292, 1451
AclWI GGATC 4 cut(s) 785, 1066, 1316, 1442
AcoI YGGCCR 2 cut(s) 215, 1448
AcsI RAATTY 4 cut(s) 285, 1165, 1349, 1544
AcuI CTGAAG 2 cut(s) 590, 1542
AfaI GTAC 2 cut(s) 466, 1092
AfiI CCNNNNNNNGG 3 cut(s) 224, 313, 1506
AflIII ACRYGT 3 cut(s) 924, 1014, 1620
AjnI CCWGG 1 cut(s) 199
AjuI GAANNNNNNNTTGG 4 cut(s) 1353, 1385, 1533, 1565
AluBI AGCT 4 cut(s) 341, 577, 587, 1002
AluI AGCT 4 cut(s) 341, 577, 587, 1002
Alw21I GWGCWC 1 cut(s) 483
Alw26I GTCTC 2 cut(s) 404, 1028
AlwI GGATC 4 cut(s) 785, 1066, 1316, 1442
AlwNI CAGNNNCTG 2 cut(s) 134, 206
AoxI GGCC 5 cut(s) 215, 292, 1393, 1448, 1569
ApeKI GCWGC 7 cut(s) 134, 249, 338, 574, 1184, 1217, 1484
ApoI RAATTY 4 cut(s) 285, 1165, 1349, 1544
AseI ATTAAT 1 cut(s) 731
Asp700I GAANNNNTTC 1 cut(s) 979
AspS9I GGNCC 6 cut(s) 56, 203, 293, 317, 556, 1117
AsuHPI GGTGA 3 cut(s) 619, 625, 1309
AsuII TTCGAA 1 cut(s) 1376
AvaII GGWCC 5 cut(s) 56, 203, 317, 556, 1117
AxyI CCTNAGG 1 cut(s) 1278
BanII GRGCYC 2 cut(s) 523, 804
BarI GAAGNNNNNNTAC 2 cut(s) 563, 595
BbsI GAAGAC 1 cut(s) 499
Bbv12I GWGCWC 1 cut(s) 483
BbvI GCAGC 7 cut(s) 121, 261, 350, 586, 1196, 1229, 1496
BccI CCATC 5 cut(s) 207, 454, 465, 1306, 1440
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 201
BclI TGATCA 1 cut(s) 993
BcoDI GTCTC 2 cut(s) 404, 1028
BfaI CTAG 6 cut(s) 60, 419, 516, 984, 1317, 1599
BfmI CTRYAG 1 cut(s) 946
BglII AGATCT 1 cut(s) 822
BisI GCNGC 9 cut(s) 135, 169, 250, 339, 575, 1185, 1218, 1451, 1485
BlsI GCNGC 9 cut(s) 136, 170, 251, 340, 576, 1186, 1219, 1452, 1486
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 5 cut(s) 56, 203, 317, 556, 1117
BmgT120I GGNCC 6 cut(s) 56, 203, 293, 317, 556, 1117
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 3 cut(s) 424, 829, 922
BpiI GAAGAC 1 cut(s) 499
Bpu14I TTCGAA 1 cut(s) 1376
BpuEI CTTGAG 3 cut(s) 353, 780, 788
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 163, 559
BsaWI WCCGGW 1 cut(s) 604
BsaXI ACNNNNNCTCC 4 cut(s) 398, 428, 609, 639
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 313, 1506
Bse118I RCCGGY 1 cut(s) 325
Bse21I CCTNAGG 1 cut(s) 1278
Bse3DI GCAATG 2 cut(s) 1020, 1158
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 2 cut(s) 163, 559
BseGI GGATG 3 cut(s) 218, 1317, 1451
BseLI CCNNNNNNNGG 3 cut(s) 224, 313, 1506
BseMI GCAATG 2 cut(s) 1020, 1158
BseMII CTCAG 4 cut(s) 233, 496, 597, 962
BseXI GCAGC 7 cut(s) 121, 261, 350, 586, 1196, 1229, 1496
BseYI CCCAGC 1 cut(s) 1213
BshFI GGCC 5 cut(s) 217, 294, 1395, 1450, 1571
BsiHKAI GWGCWC 1 cut(s) 483
BsiSI CCGG 3 cut(s) 326, 347, 605
BslFI GGGAC 1 cut(s) 935
BslI CCNNNNNNNGG 3 cut(s) 224, 313, 1506
BsmAI GTCTC 2 cut(s) 404, 1028
BsmFI GGGAC 1 cut(s) 935
BsmI GAATGC 1 cut(s) 1517
BsnI GGCC 5 cut(s) 217, 294, 1395, 1450, 1571
Bso31I GGTCTC 1 cut(s) 404
Bsp119I TTCGAA 1 cut(s) 1376
Bsp1286I GDGCHC 3 cut(s) 483, 523, 804
Bsp1407I TGTACA 1 cut(s) 1090
Bsp143I GATC 6 cut(s) 790, 822, 993, 1071, 1321, 1434
Bsp19I CCATGG 1 cut(s) 559
BspACI CCGC 6 cut(s) 168, 197, 296, 808, 1292, 1451
BspANI GGCC 5 cut(s) 217, 294, 1395, 1450, 1571
BspCNI CTCAG 4 cut(s) 234, 495, 596, 963
BspLI GGNNCC 1 cut(s) 318
BspPI GGATC 4 cut(s) 785, 1066, 1316, 1442
BspQI GCTCTTC 1 cut(s) 1332
BspT104I TTCGAA 1 cut(s) 1376
BspTNI GGTCTC 1 cut(s) 404
BsrBI CCGCTC 1 cut(s) 298
BsrDI GCAATG 2 cut(s) 1020, 1158
BsrFI RCCGGY 1 cut(s) 325
BsrGI TGTACA 1 cut(s) 1090
BssAI RCCGGY 1 cut(s) 325
BssECI CCNNGG 2 cut(s) 163, 559
BssMI GATC 6 cut(s) 790, 822, 993, 1071, 1321, 1434
BssT1I CCWWGG 1 cut(s) 559
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 3 cut(s) 637, 1051, 1468
Bst6I CTCTTC 2 cut(s) 46, 1332
BstAUI TGTACA 1 cut(s) 1090
BstBI TTCGAA 1 cut(s) 1376
BstC8I GCNNGC 6 cut(s) 296, 358, 548, 1004, 1027, 1455
BstDEI CTNAG 6 cut(s) 242, 482, 583, 906, 971, 1278
BstDSI CCRYGG 2 cut(s) 163, 559
BstF5I GGATG 3 cut(s) 218, 1317, 1451
BstKTI GATC 6 cut(s) 793, 825, 996, 1074, 1324, 1437
BstMAI GTCTC 2 cut(s) 404, 1028
BstMBI GATC 6 cut(s) 790, 822, 993, 1071, 1321, 1434
BstMWI GCNNNNNNNGC 1 cut(s) 672
BstNI CCWGG 1 cut(s) 201
BstNSI RCATGY 4 cut(s) 666, 928, 1018, 1624
BstSCI CCNGG 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 946
BstV1I GCAGC 7 cut(s) 121, 261, 350, 586, 1196, 1229, 1496
BstV2I GAAGAC 1 cut(s) 499
BstX2I RGATCY 4 cut(s) 822, 1071, 1321, 1434
BstXI CCANNNNNNTGG 2 cut(s) 1127, 1332
BstYI RGATCY 4 cut(s) 822, 1071, 1321, 1434
Bsu36I CCTNAGG 1 cut(s) 1278
BsuRI GGCC 5 cut(s) 217, 294, 1395, 1450, 1571
BtgI CCRYGG 2 cut(s) 163, 559
BtgZI GCGATG 2 cut(s) 1445, 1567
BtsCI GGATG 3 cut(s) 218, 1317, 1451
BtsI GCAGTG 1 cut(s) 1194
BtsIMutI CAGTG 2 cut(s) 1047, 1194
Cac8I GCNNGC 6 cut(s) 296, 358, 548, 1004, 1027, 1455
CaiI CAGNNNCTG 2 cut(s) 134, 206
Cfr10I RCCGGY 1 cut(s) 325
Cfr13I GGNCC 6 cut(s) 56, 203, 293, 317, 556, 1117
Csp6I GTAC 2 cut(s) 465, 1091
CviQI GTAC 2 cut(s) 465, 1091
DdeI CTNAG 6 cut(s) 242, 482, 583, 906, 971, 1278
DpnI GATC 6 cut(s) 792, 824, 995, 1073, 1323, 1436
DpnII GATC 6 cut(s) 790, 822, 993, 1071, 1321, 1434
EaeI YGGCCR 2 cut(s) 215, 1448
Eam1104I CTCTTC 2 cut(s) 46, 1332
EarI CTCTTC 2 cut(s) 46, 1332
Eco130I CCWWGG 1 cut(s) 559
Eco24I GRGCYC 2 cut(s) 523, 804
Eco31I GGTCTC 1 cut(s) 404
Eco47I GGWCC 5 cut(s) 56, 203, 317, 556, 1117
Eco57I CTGAAG 2 cut(s) 590, 1542
Eco81I CCTNAGG 1 cut(s) 1278
EcoO109I RGGNCCY 2 cut(s) 56, 203
EcoRII CCWGG 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 559
EcoT22I ATGCAT 2 cut(s) 6, 937
EcoT38I GRGCYC 2 cut(s) 523, 804
ErhI CCWWGG 1 cut(s) 559
FaqI GGGAC 1 cut(s) 935
FauI CCCGC 2 cut(s) 204, 303
FauNDI CATATG 1 cut(s) 430
FbaI TGATCA 1 cut(s) 993
Fnu4HI GCNGC 9 cut(s) 135, 169, 250, 339, 575, 1185, 1218, 1451, 1485
FokI GGATG 3 cut(s) 225, 1324, 1458
FriOI GRGCYC 2 cut(s) 523, 804
Fsp4HI GCNGC 9 cut(s) 135, 169, 250, 339, 575, 1185, 1218, 1451, 1485
FspBI CTAG 6 cut(s) 60, 419, 516, 984, 1317, 1599
GluI GCNGC 9 cut(s) 135, 169, 250, 339, 575, 1185, 1218, 1451, 1485
GsaI CCCAGC 1 cut(s) 1217
HaeIII GGCC 5 cut(s) 217, 294, 1395, 1450, 1571
HapII CCGG 3 cut(s) 326, 347, 605
HincII GTYRAC 1 cut(s) 967
HindII GTYRAC 1 cut(s) 967
HindIII AAGCTT 1 cut(s) 1000
HinfI GANTC 5 cut(s) 601, 716, 891, 1206, 1602
HpaII CCGG 3 cut(s) 326, 347, 605
HphI GGTGA 3 cut(s) 619, 625, 1309
Hpy166II GTNNAC 8 cut(s) 163, 467, 610, 967, 1093, 1300, 1531, 1618
Hpy188I TCNGA 5 cut(s) 459, 485, 1012, 1087, 1205
Hpy188III TCNNGA 3 cut(s) 984, 1109, 1520
Hpy8I GTNNAC 8 cut(s) 163, 467, 610, 967, 1093, 1300, 1531, 1618
Hpy99I CGWCG 1 cut(s) 1239
HpyAV CCTTC 5 cut(s) 106, 242, 692, 904, 1187
HpyCH4III ACNGT 3 cut(s) 637, 1051, 1468
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 9 cut(s) 4, 47, 108, 137, 666, 935, 1025, 1347, 1471
HpyF10VI GCNNNNNNNGC 1 cut(s) 672
HpyF3I CTNAG 6 cut(s) 242, 482, 583, 906, 971, 1278
HpySE526I ACGT 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 993
Kzo9I GATC 6 cut(s) 790, 822, 993, 1071, 1321, 1434
LguI GCTCTTC 1 cut(s) 1332
Lsp1109I GCAGC 7 cut(s) 121, 261, 350, 586, 1196, 1229, 1496
LweI GCATC 3 cut(s) 424, 829, 922
MaeI CTAG 6 cut(s) 60, 419, 516, 984, 1317, 1599
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 653
MalI GATC 6 cut(s) 792, 824, 995, 1073, 1323, 1436
MbiI CCGCTC 1 cut(s) 298
MboI GATC 6 cut(s) 790, 822, 993, 1071, 1321, 1434
MflI RGATCY 4 cut(s) 822, 1071, 1321, 1434
MhlI GDGCHC 3 cut(s) 483, 523, 804
MlyI GAGTC 2 cut(s) 1200, 1596
MmeI TCCRAC 3 cut(s) 190, 1108, 1228
Mph1103I ATGCAT 2 cut(s) 6, 937
MroXI GAANNNNTTC 1 cut(s) 979
MseI TTAA 3 cut(s) 273, 722, 731
MslI CAYNNNNRTG 1 cut(s) 1420
MspI CCGG 3 cut(s) 326, 347, 605
MspR9I CCNGG 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 1517
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 672
NcoI CCATGG 1 cut(s) 559
NdeI CATATG 1 cut(s) 430
NdeII GATC 6 cut(s) 790, 822, 993, 1071, 1321, 1434
NlaIV GGNNCC 1 cut(s) 318
NmeAIII GCCGAG 1 cut(s) 204
NsiI ATGCAT 2 cut(s) 6, 937
NspI RCATGY 4 cut(s) 666, 928, 1018, 1624
NspV TTCGAA 1 cut(s) 1376
PciI ACATGT 3 cut(s) 924, 1014, 1620
PciSI GCTCTTC 1 cut(s) 1332
PctI GAATGC 1 cut(s) 1517
PdmI GAANNNNTTC 1 cut(s) 979
PfeI GAWTC 3 cut(s) 601, 716, 891
PkrI GCNGC 9 cut(s) 136, 170, 251, 340, 576, 1186, 1219, 1452, 1486
PleI GAGTC 2 cut(s) 1200, 1596
PpsI GAGTC 2 cut(s) 1200, 1596
PpuMI RGGWCCY 2 cut(s) 56, 203
PscI ACATGT 3 cut(s) 924, 1014, 1620
PshBI ATTAAT 1 cut(s) 731
Psp5II RGGWCCY 2 cut(s) 56, 203
Psp6I CCWGG 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 1213
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 318
PspPI GGNCC 6 cut(s) 56, 203, 293, 317, 556, 1117
PspPPI RGGWCCY 2 cut(s) 56, 203
PstNI CAGNNNCTG 2 cut(s) 134, 206
PsuI RGATCY 4 cut(s) 822, 1071, 1321, 1434
RsaI GTAC 2 cut(s) 466, 1092
RsaNI GTAC 2 cut(s) 465, 1091
RseI CAYNNNNRTG 1 cut(s) 1420
SapI GCTCTTC 1 cut(s) 1332
SaqAI TTAA 3 cut(s) 273, 722, 731
SatI GCNGC 9 cut(s) 135, 169, 250, 339, 575, 1185, 1218, 1451, 1485
Sau3AI GATC 6 cut(s) 790, 822, 993, 1071, 1321, 1434
Sau96I GGNCC 6 cut(s) 56, 203, 293, 317, 556, 1117
SchI GAGTC 2 cut(s) 1200, 1596
ScrFI CCNGG 1 cut(s) 201
SduI GDGCHC 3 cut(s) 483, 523, 804
SfaNI GCATC 3 cut(s) 424, 829, 922
SfcI CTRYAG 1 cut(s) 946
SfuI TTCGAA 1 cut(s) 1376
SinI GGWCC 5 cut(s) 56, 203, 317, 556, 1117
SmiMI CAYNNNNRTG 1 cut(s) 1420
SmlI CTYRAG 3 cut(s) 368, 795, 803
SmoI CTYRAG 3 cut(s) 368, 795, 803
SsiI CCGC 6 cut(s) 168, 197, 296, 808, 1292, 1451
SspI AATATT 1 cut(s) 492
SspMI CTAG 6 cut(s) 60, 419, 516, 984, 1317, 1599
StyD4I CCNGG 1 cut(s) 199
StyI CCWWGG 1 cut(s) 559
TaaI ACNGT 3 cut(s) 637, 1051, 1468
TaiI ACGT 1 cut(s) 81
TaqI TCGA 1 cut(s) 1376
TatI WGTACW 1 cut(s) 1090
TauI GCSGC 2 cut(s) 171, 1453
TfiI GAWTC 3 cut(s) 601, 716, 891
Tru1I TTAA 3 cut(s) 273, 722, 731
Tru9I TTAA 3 cut(s) 273, 722, 731
TscAI CASTG 2 cut(s) 1054, 1194
TseI GCWGC 7 cut(s) 134, 249, 338, 574, 1184, 1217, 1484
TspDTI ATGAA 7 cut(s) 136, 276, 278, 513, 619, 725, 1009
TspGWI ACGGA 1 cut(s) 1046
TspRI CASTG 2 cut(s) 1054, 1194
VpaK11BI GGWCC 5 cut(s) 56, 203, 317, 556, 1117
VspI ATTAAT 1 cut(s) 731
XapI RAATTY 4 cut(s) 285, 1165, 1349, 1544
XbaI TCTAGA 1 cut(s) 983
XceI RCATGY 4 cut(s) 666, 928, 1018, 1624
XmnI GAANNNNTTC 1 cut(s) 979
XspI CTAG 6 cut(s) 60, 419, 516, 984, 1317, 1599
Zsp2I ATGCAT 2 cut(s) 6, 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.