Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005572

Physical Location & Seq

Genomic Coordinates Reverse (-)

7731968 .. 7732507

Gene Structure 540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1056500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTCGCGGGCAAAGTTCTTCCTAATTACTCTAGTTTGCAGTTTTACATGGTATGCTTTCCCAGGGTATCTCTTCACAACACTCACTAACATCTCATGGGTTTGCTGGCTATTCTCAAAGTCAGTTACAGCTCAGCAGATTGGCTCGGGCATGAGAGGCCTCGGAGTAGGATCCCTGACACTTGACTGGTCGGCAGTGGCATCCTTCTTGTTCAGCCCCCTCATCTGCCCTTTCCTTGTCATCGTTAATGTTTTTGCGAGGTATGCATTGATACTCTATTTAGTTATCCCTATAGCGTACTGGGGACTGGACTCATACAGTGCACAAAAGTTCCCCATTTTTTCCTCGCACTTGTTTACGGCAGAAGGTCAAGATTACAACATAACAGCTATAGTCGATGACAAATTTCAGTTAGATATTCCAAAGTATGAGGAGCAAGGGCGGATTCACTTAAGCATGTTTTTCGCTCTCACTTATGGCTTTGGTTTTGTAACCATTGCATCCACCCTCACACATGTAGCCTTATTCTATGGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0009628 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0080167 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

180

Amino Acids

20.22

Weight (kDa)

7.71

Isoelectric Point (pI)

30.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	1 - 179	6e-34	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64410
fragaria_vesca	FvH4_2g11230 FvH4_2g11230 FvH4_2g11230 FvH4_2g11230
malus_domestica	MD10G1056500.v1.1
prunus_persica	Prupe.8G074200_v2.0.a1 Prupe.8G074200_v2.0.a1 Prupe.8G074200_v2.0.a1 Prupe.8G074200_v2.0.a1 Prupe.8G074200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0161611 RchiOBHm_Chr2g0161681
rosa_laevigata	RLG00000021292
rosa_multiflora	Rmu_co8151922.1_g000001 Rmu_sc0008849.1_g000001 Rmu_ssc0000044.1_g000022
rosa_roxburghii	Rroxscaffold_2G00088690
rosa_rugosa	Rorug02G0491300
rosa_samantha	Rh2AG556900 Rh2AG557300 Rh2BG570400 Rh2BG570900 Rh2CG540900 Rh2DG579600 Rh2DG579800
rosa_wichuraiana	Rw2G046090 Rw2G046110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	7
AciI	CCGC	2 cut(s)	7, 442
AclWI	GGATC	2 cut(s)	165, 178
AcsI	RAATTY	1 cut(s)	404
AfaI	GTAC	1 cut(s)	299
AflII	CTTAAG	1 cut(s)	451
AflIII	ACRYGT	1 cut(s)	514
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	2 cut(s)	131, 389
AluI	AGCT	2 cut(s)	131, 389
Alw21I	GWGCWC	1 cut(s)	325
Alw44I	GTGCAC	1 cut(s)	321
AlwI	GGATC	2 cut(s)	165, 178
Ama87I	CYCGRG	1 cut(s)	145
AoxI	GGCC	1 cut(s)	157
ApaLI	GTGCAC	1 cut(s)	321
ApoI	RAATTY	1 cut(s)	404
AvaI	CYCGRG	1 cut(s)	145
BaeGI	GKGCMC	1 cut(s)	325
BamHI	GGATCC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	325
BceAI	ACGGC	1 cut(s)	375
BcgI	CGANNNNNNTGC	2 cut(s)	445, 479
BciT130I	CCWGG	1 cut(s)	63
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	2 cut(s)	291, 390
BfrI	CTTAAG	1 cut(s)	451
BlpI	GCTNAGC	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	63
BmeT110I	CYCGRG	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	63
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	2 cut(s)	209, 509
BmuI	ACTGGG	1 cut(s)	310
Bpu1102I	GCTNAGC	1 cut(s)	132
BsaJI	CCNNGG	3 cut(s)	61, 62, 160
Bse1I	ACTGG	3 cut(s)	191, 305, 312
Bse3DI	GCAATG	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	3 cut(s)	61, 62, 160
BseGI	GGATG	2 cut(s)	200, 500
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	3 cut(s)	191, 305, 312
BseRI	GAGGAG	1 cut(s)	446
BseSI	GKGCMC	1 cut(s)	325
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	325
BsiHKCI	CYCGRG	1 cut(s)	145
BslFI	GGGAC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	159
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	1 cut(s)	170
Bsp1720I	GCTNAGC	1 cut(s)	132
BspACI	CCGC	2 cut(s)	7, 442
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	172
BspPI	GGATC	2 cut(s)	165, 178
BspTI	CTTAAG	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	495
BsrI	ACTGG	3 cut(s)	191, 305, 312
BssECI	CCNNGG	3 cut(s)	61, 62, 160
BssMI	GATC	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	77
BstAFI	CTTAAG	1 cut(s)	451
BstC8I	GCNNGC	2 cut(s)	9, 107
BstDEI	CTNAG	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	200, 500
BstFNI	CGCG	1 cut(s)	7
BstKTI	GATC	1 cut(s)	173
BstMBI	GATC	1 cut(s)	170
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 263
BstNI	CCWGG	1 cut(s)	63
BstNSI	RCATGY	2 cut(s)	460, 518
BstSCI	CCNGG	1 cut(s)	61
BstSFI	CTRYAG	2 cut(s)	291, 390
BstSLI	GKGCMC	1 cut(s)	325
BstUI	CGCG	1 cut(s)	7
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	200, 500
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	201, 325
Cac8I	GCNNGC	2 cut(s)	9, 107
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	5 cut(s)	48, 96, 151, 457, 515
CviJI	RGCY	8 cut(s)	109, 131, 144, 159, 216, 389, 480, 521
CviKI_1	RGCY	8 cut(s)	109, 131, 144, 159, 216, 389, 480, 521
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	1 cut(s)	172
DpnII	GATC	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	457
Eco147I	AGGCCT	1 cut(s)	159
Eco88I	CYCGRG	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	61
EcoT22I	ATGCAT	1 cut(s)	268
FaeI	CATG	5 cut(s)	51, 99, 154, 460, 518
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	5 cut(s)	47, 95, 150, 456, 514
FokI	GGATG	2 cut(s)	187, 487
FspBI	CTAG	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	159
Hin1II	CATG	5 cut(s)	51, 99, 154, 460, 518
HinfI	GANTC	2 cut(s)	311, 445
Hpy166II	GTNNAC	2 cut(s)	323, 357
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	2 cut(s)	323, 357
HpyAV	CCTTC	3 cut(s)	214, 359, 528
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4V	TGCA	4 cut(s)	39, 266, 323, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 263
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	5 cut(s)	51, 99, 154, 460, 518
Kzo9I	GATC	1 cut(s)	170
LmnI	GCTCC	1 cut(s)	433
LpnPI	CCDG	7 cut(s)	48, 75, 91, 172, 188, 286, 293
LweI	GCATC	2 cut(s)	209, 509
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	124, 490
MalI	GATC	1 cut(s)	172
MboI	GATC	1 cut(s)	170
MboII	GAAGA	2 cut(s)	10, 64
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	2 cut(s)	24, 404
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	7 cut(s)	149, 170, 230, 252, 355, 424, 518
Mph1103I	ATGCAT	1 cut(s)	268
MseI	TTAA	2 cut(s)	246, 452
MspCI	CTTAAG	1 cut(s)	451
MspR9I	CCNGG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	156, 263
NdeII	GATC	1 cut(s)	170
NlaIII	CATG	5 cut(s)	51, 99, 154, 460, 518
NlaIV	GGNNCC	1 cut(s)	172
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	2 cut(s)	460, 518
PasI	CCCWGGG	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	159
PciI	ACATGT	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	445
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
PscI	ACATGT	1 cut(s)	514
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	170
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	2 cut(s)	246, 452
Sau3AI	GATC	1 cut(s)	170
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	5 cut(s)	133, 263, 370, 391, 539
SfaNI	GCATC	2 cut(s)	209, 509
SfcI	CTRYAG	2 cut(s)	291, 390
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
Sse9I	AATT	2 cut(s)	24, 404
SseBI	AGGCCT	1 cut(s)	159
SsiI	CCGC	2 cut(s)	7, 442
SspMI	CTAG	1 cut(s)	32
StuI	AGGCCT	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	320
TaqI	TCGA	1 cut(s)	396
TasI	AATT	2 cut(s)	24, 404
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	2 cut(s)	246, 452
Tru9I	TTAA	2 cut(s)	246, 452
TscAI	CASTG	2 cut(s)	201, 325
TspRI	CASTG	2 cut(s)	201, 325
Vha464I	CTTAAG	1 cut(s)	451
VneI	GTGCAC	1 cut(s)	321
XapI	RAATTY	1 cut(s)	404
XceI	RCATGY	2 cut(s)	460, 518
XspI	CTAG	1 cut(s)	32
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.