Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8151922.1

Orthogroup ID

OG0005572

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 646

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8151922.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 577 bp

ggctttgcatgagaaagaggagaaaggtgaccagcgcatttcacgggcaaagttcttcctaattgctctaatctgcagttttacatggtatgctttcccagggtatctcttcaccaccctcacaagcatttcatgggtttgttggatattctccaagtcggttacagcccagcagattggctcaggcatgagaggccttggagttggagcaattacgcttgactggactgcagtggcgtccttcttgttcagccccctcgtctgccccttctttgccattgctaatgttttcgttggctatgcattgataatctacattgtaatccctatagcatactggggattggactcgtacgatgcacagaagtttcccatcttttcctcgcacttgtttactgcagcaggtcaacgctacgacataccagctattgtcaatgacaagtttcagttagatatagcaaagtatgaggagcagggacgaattcacttaagcacgttttttgctctcacttatggctttggttttgccacaatcgcttccaccctcacacatgtagggttattctatggaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0009628 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0080167 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

191

Amino Acids

21.38

Weight (kDa)

7.92

Isoelectric Point (pI)

24.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64410
fragaria_vesca	FvH4_2g11230 FvH4_2g11230 FvH4_2g11230 FvH4_2g11230
malus_domestica	MD10G1056500.v1.1
prunus_persica	Prupe.8G074200_v2.0.a1 Prupe.8G074200_v2.0.a1 Prupe.8G074200_v2.0.a1 Prupe.8G074200_v2.0.a1 Prupe.8G074200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0161611 RchiOBHm_Chr2g0161681
rosa_laevigata	RLG00000021292
rosa_multiflora	Rmu_co8151922.1_g000001 Rmu_sc0008849.1_g000001 Rmu_ssc0000044.1_g000022
rosa_roxburghii	Rroxscaffold_2G00088690
rosa_rugosa	Rorug02G0491300
rosa_samantha	Rh2AG556900 Rh2AG557300 Rh2BG570400 Rh2BG570900 Rh2CG540900 Rh2DG579600 Rh2DG579800
rosa_wichuraiana	Rw2G046090 Rw2G046110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	481
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	1 cut(s)	354
AflII	CTTAAG	1 cut(s)	488
AflIII	ACRYGT	1 cut(s)	551
AjnI	CCWGG	1 cut(s)	98
AluBI	AGCT	1 cut(s)	426
AluI	AGCT	1 cut(s)	426
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	399
ApoI	RAATTY	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	39, 104
BbvI	GCAGC	1 cut(s)	411
BccI	CCATC	1 cut(s)	381
BciT130I	CCWGG	1 cut(s)	100
BfmI	CTRYAG	4 cut(s)	74, 229, 328, 397
BfrI	CTTAAG	1 cut(s)	488
BfuAI	ACCTGC	1 cut(s)	393
BisI	GCNGC	1 cut(s)	400
BlsI	GCNGC	1 cut(s)	401
Bme1390I	CCNGG	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	100
BmrI	ACTGGG	1 cut(s)	347
BmsI	GCATC	1 cut(s)	347
BmuI	ACTGGG	1 cut(s)	347
Bpu10I	CCTNAGC	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	3 cut(s)	98, 99, 197
Bse1I	ACTGG	2 cut(s)	228, 342
Bse3DI	GCAATG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	3 cut(s)	98, 99, 197
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	2 cut(s)	228, 342
BseRI	GAGGAG	2 cut(s)	33, 483
BseXI	GCAGC	1 cut(s)	411
BseYI	CCCAGC	1 cut(s)	169
BshFI	GGCC	1 cut(s)	196
BsiWI	CGTACG	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	490
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	1 cut(s)	196
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	1 cut(s)	195
BspMAI	CTGCAG	3 cut(s)	78, 233, 401
BspMI	ACCTGC	1 cut(s)	393
BspTI	CTTAAG	1 cut(s)	488
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	2 cut(s)	228, 342
BssECI	CCNNGG	3 cut(s)	98, 99, 197
BssNI	GRCGYC	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	114
BstACI	GRCGYC	1 cut(s)	237
BstAFI	CTTAAG	1 cut(s)	488
BstDEI	CTNAG	1 cut(s)	182
BstEII	GGTNACC	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 534
BstNI	CCWGG	1 cut(s)	100
BstNSI	RCATGY	1 cut(s)	555
BstPI	GGTNACC	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	98
BstSFI	CTRYAG	4 cut(s)	74, 229, 328, 397
BstV1I	GCAGC	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	238
BveI	ACCTGC	1 cut(s)	393
CfoI	GCGC	1 cut(s)	37
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	5 cut(s)	9, 85, 133, 188, 552
CviJI	RGCY	8 cut(s)	3, 168, 181, 196, 253, 298, 426, 517
CviKI_1	RGCY	8 cut(s)	3, 168, 181, 196, 253, 298, 426, 517
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	197
Eco147I	AGGCCT	1 cut(s)	196
Eco91I	GGTNACC	1 cut(s)	27
EcoO65I	GGTNACC	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	197
EcoT22I	ATGCAT	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	5 cut(s)	12, 88, 136, 191, 555
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	5 cut(s)	8, 84, 132, 187, 551
Fnu4HI	GCNGC	1 cut(s)	400
Fsp4HI	GCNGC	1 cut(s)	400
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	400
GsaI	CCCAGC	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	196
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	5 cut(s)	12, 88, 136, 191, 555
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HinfI	GANTC	1 cut(s)	348
HphI	GGTGA	2 cut(s)	39, 104
Hpy166II	GTNNAC	2 cut(s)	394, 408
Hpy8I	GTNNAC	2 cut(s)	394, 408
HpyAV	CCTTC	3 cut(s)	251, 278, 565
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	6 cut(s)	8, 76, 231, 303, 360, 399
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 534
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	495
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	5 cut(s)	12, 88, 136, 191, 555
HspAI	GCGC	1 cut(s)	35
LmnI	GCTCC	2 cut(s)	207, 470
Lsp1109I	GCAGC	1 cut(s)	411
LweI	GCATC	1 cut(s)	347
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	2 cut(s)	27, 161
MboII	GAAGA	2 cut(s)	47, 101
MluCI	AATT	3 cut(s)	61, 211, 481
MlyI	GAGTC	1 cut(s)	342
MmeI	TCCRAC	2 cut(s)	123, 185
MnlI	CCTC	7 cut(s)	11, 129, 186, 267, 392, 461, 555
Mph1103I	ATGCAT	1 cut(s)	305
MseI	TTAA	1 cut(s)	489
MspCI	CTTAAG	1 cut(s)	488
MspR9I	CCNGG	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	2 cut(s)	193, 534
NlaIII	CATG	5 cut(s)	12, 88, 136, 191, 555
NmuCI	GTSAC	1 cut(s)	27
NsiI	ATGCAT	1 cut(s)	305
NspI	RCATGY	1 cut(s)	555
PasI	CCCWGGG	1 cut(s)	99
PceI	AGGCCT	1 cut(s)	196
PciI	ACATGT	1 cut(s)	551
Pfl23II	CGTACG	1 cut(s)	352
PkrI	GCNGC	1 cut(s)	401
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
PscI	ACATGT	1 cut(s)	551
Psp6I	CCWGG	1 cut(s)	98
PspEI	GGTNACC	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	98
PspLI	CGTACG	1 cut(s)	352
PstI	CTGCAG	3 cut(s)	78, 233, 401
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	1 cut(s)	400
SchI	GAGTC	1 cut(s)	342
ScrFI	CCNGG	1 cut(s)	100
SetI	ASST	5 cut(s)	29, 407, 428, 498, 576
SfaNI	GCATC	1 cut(s)	347
SfcI	CTRYAG	4 cut(s)	74, 229, 328, 397
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	3 cut(s)	61, 211, 481
SseBI	AGGCCT	1 cut(s)	196
StuI	AGGCCT	1 cut(s)	196
StyD4I	CCNGG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	197
TaiI	ACGT	1 cut(s)	498
TasI	AATT	3 cut(s)	61, 211, 481
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	27
TseI	GCWGC	1 cut(s)	399
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	1 cut(s)	121
TspRI	CASTG	1 cut(s)	238
Vha464I	CTTAAG	1 cut(s)	488
XapI	RAATTY	1 cut(s)	481
XceI	RCATGY	1 cut(s)	555
Zsp2I	ATGCAT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.