Rh2DG579600

oligopeptide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0005572
Physical Location & Seq
Forward (+)
80998538 .. 81003546
5009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG579600.1

Sequence Viewer

Length: 1452 bp
ATGGGAACTGTTATGGAATTAGAAGCTCCCAAACCCAAAATCGAAGACGACGACGACGTCTCCCCCGTCGAGCAAGTCCGTCTGACGGTGACCAACGACGACGACCCGACCCTCCCCGTCTGGACCTTCCGAATGTGGTTCCTAGGCCTCCTCTCCTGCGCCCTCCTCTCCTTTCTCAACCAGTTCTTCGCCTACAGAACCGAGCCACTCATCATCACCCAAATCACCGTACAAGTCGCTACGCTCCCCATAGGCCACTTCATGGCCAGAATCCTCCCCACCACCAAGTTCCGGATCCCCGGACTTGGCTCTGAGGTTTCCCTGAACCCCGGTCCCTTCAACATCAAAGAGCATGTGCTGATCACCATTTTCGCCAACGCCGGAAGTGCTTTCGGATCTGGCTCGGCTTACGCTGTGGGGATTGTCAACATCATCACGAAGTTTTATATGCGGAAGATCACTTTCCTCGCTAGCTGGCTGCTTATTATAACAACCCAGGTGTTGGGATATGGTTGGGCTGGACTCCTGAGAAAGTATGTTGTGGAGCCTGCTCATATGTGGTGGCCGAACACACTCGTTCAGGTTTCACTTTTCCGGGCTTTGCATGAGAAAGAGGAGAAAGGTGACCAGCGCATTTCACGGGCAAAGTTCTTCCTAATTGCTCTAGTTTGCAGTTTTACATGGTATGCTTTCCCAGGGTATCTCTTCACCACCCTCACAAACATATCATGGGTATGTTGGATATTCTCCAAGTCGGTTACAGCCCAGCAGATTGGCTCAGGCATGAGAGGCCTTGGAGTTGGAGCCATTACGCTTGACTGGACTGCAGTGGCATCCTTCTTGTTCAGCCCCCTCATCTGCCCTTTCTTTGCCATTGCTAATGTTTTCGTCGGCTATGCATTGATAATCTACATTGTAATCCCTACAGCATACTGGGGATTGGACTTGTACGATGCACAGAAGTTTCCCATCTTTTCCTCACACTTGTTTACTGCAGCAGGTCAACGCTACGACATACCAGCTATTGTCAATGACAATTTTGAGTTAGATATAGCAAAGTATAAGGAGCAGGGACGAATTCACTTAAGCACCTTTTTTGCCCTCACTTATGGCTTTGGTTTTGCCACTATCGCTTCCACCCTCACACATGTAGGGTTGTTCTATGGAAGAGAGATCATGGATCGCTATCGTGCTTCTTACCAAGGAAAGGATGACATCCATACTAGATTGATGAGAAAATACAAGGACATACCTTCCTGGTGGTTTTACATGTTGCTGGTCGTTACACTTGCAGTTTCCCTTGTACTTTGCATATTCTTGAATGATCAGGTTCAGATGCCATGGTGGGGACTTCTATTTGCTGGTGCCATAGCCTTTACATTCACCCTTCCTATCAGCATCATAACAGCAACAACAAACCAGGTGAGATACATGGTTCCTCTTTTGTTTTAG

Protein Analysis

483

Amino Acids

54.68

Weight (kDa)

8.44

Isoelectric Point (pI)

26.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 40 - 474 8.1e-110 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 488
AasI GACNNNNNNGTC 1 cut(s) 56
AatII GACGTC 1 cut(s) 60
Acc36I ACCTGC 1 cut(s) 989
AccB1I GGYRCC 1 cut(s) 1364
AccB7I CCANNNNNTGG 2 cut(s) 262, 502
AccIII TCCGGA 1 cut(s) 291
AciI CCGC 1 cut(s) 451
AclWI GGATC 4 cut(s) 289, 302, 403, 1188
AcoI YGGCCR 2 cut(s) 264, 563
AcsI RAATTY 1 cut(s) 1077
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 3 cut(s) 231, 950, 1305
AfiI CCNNNNNNNGG 7 cut(s) 85, 262, 291, 305, 502, 1207, 1346
AflII CTTAAG 1 cut(s) 1084
AflIII ACRYGT 2 cut(s) 1147, 1269
AgsI TTSAA 2 cut(s) 340, 1321
AjnI CCWGG 4 cut(s) 495, 694, 1256, 1419
AluBI AGCT 3 cut(s) 26, 474, 1022
AluI AGCT 3 cut(s) 26, 474, 1022
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 4 cut(s) 289, 302, 403, 1188
Aor13HI TCCGGA 1 cut(s) 291
AoxI GGCC 5 cut(s) 145, 253, 264, 563, 790
ApeKI GCWGC 2 cut(s) 478, 995
ApoI RAATTY 1 cut(s) 1077
AspA2I CCTAGG 1 cut(s) 142
AspLEI GCGC 2 cut(s) 161, 633
AspS9I GGNCC 2 cut(s) 123, 332
AsuC2I CCSGG 3 cut(s) 300, 330, 596
AsuHPI GGTGA 8 cut(s) 100, 208, 217, 355, 635, 700, 1375, 1435
AsuNHI GCTAGC 1 cut(s) 470
AvaII GGWCC 2 cut(s) 123, 332
AvrII CCTAGG 1 cut(s) 142
BalI TGGCCA 1 cut(s) 266
BamHI GGATCC 1 cut(s) 294
BanI GGYRCC 1 cut(s) 1364
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 465, 1007
BccI CCATC 1 cut(s) 977
BciT130I CCWGG 4 cut(s) 497, 696, 1258, 1421
BclI TGATCA 2 cut(s) 360, 1324
BcnI CCSGG 3 cut(s) 300, 330, 596
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 4 cut(s) 143, 471, 665, 1224
BfmI CTRYAG 4 cut(s) 193, 825, 924, 993
BfrI CTTAAG 1 cut(s) 1084
BfuAI ACCTGC 1 cut(s) 989
BisI GCNGC 2 cut(s) 479, 996
BlnI CCTAGG 1 cut(s) 142
BlsI GCNGC 2 cut(s) 480, 997
Bme1390I CCNGG 7 cut(s) 300, 330, 497, 596, 696, 1258, 1421
Bme18I GGWCC 2 cut(s) 123, 332
BmgT120I GGNCC 2 cut(s) 123, 332
BmiI GGNNCC 7 cut(s) 140, 296, 334, 546, 805, 1366, 1437
BmrFI CCNGG 7 cut(s) 300, 330, 497, 596, 696, 1258, 1421
BmrI ACTGGG 1 cut(s) 943
BmsI GCATC 4 cut(s) 842, 943, 1326, 1407
BmtI GCTAGC 1 cut(s) 474
BmuI ACTGGG 1 cut(s) 943
BpiI GAAGAC 1 cut(s) 51
Bpu10I CCTNAGC 1 cut(s) 778
BpuMI CCSGG 3 cut(s) 300, 330, 596
BsaBI GATNNNNATC 1 cut(s) 1185
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 9 cut(s) 142, 298, 328, 495, 694, 695, 793, 1201, 1340
BsaWI WCCGGW 1 cut(s) 291
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 7 cut(s) 85, 262, 291, 305, 502, 1207, 1346
Bse1I ACTGG 3 cut(s) 181, 824, 938
Bse3DI GCAATG 1 cut(s) 873
Bse8I GATNNNNATC 1 cut(s) 1185
BseAI TCCGGA 1 cut(s) 291
BseBI CCWGG 4 cut(s) 497, 696, 1258, 1421
BseDI CCNNGG 9 cut(s) 142, 298, 328, 495, 694, 695, 793, 1201, 1340
BseGI GGATG 3 cut(s) 833, 1215, 1216
BseJI GATNNNNATC 1 cut(s) 1185
BseLI CCNNNNNNNGG 7 cut(s) 85, 262, 291, 305, 502, 1207, 1346
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 3 cut(s) 303, 518, 792
BseNI ACTGG 3 cut(s) 181, 824, 938
BseRI GAGGAG 3 cut(s) 140, 155, 629
BseXI GCAGC 2 cut(s) 465, 1007
BseYI CCCAGC 1 cut(s) 765
BshFI GGCC 5 cut(s) 147, 255, 266, 565, 792
BshNI GGYRCC 1 cut(s) 1364
BsiSI CCGG 5 cut(s) 292, 300, 330, 381, 595
BslFI GGGAC 3 cut(s) 318, 1086, 1362
BslI CCNNNNNNNGG 7 cut(s) 85, 262, 291, 305, 502, 1207, 1346
BsmAI GTCTC 1 cut(s) 64
BsmBI CGTCTC 1 cut(s) 64
BsmFI GGGAC 3 cut(s) 318, 1086, 1362
BsnI GGCC 5 cut(s) 147, 255, 266, 565, 792
Bsp13I TCCGGA 1 cut(s) 291
Bsp143I GATC 7 cut(s) 294, 360, 395, 456, 1173, 1180, 1324
Bsp19I CCATGG 1 cut(s) 1340
BspACI CCGC 1 cut(s) 451
BspANI GGCC 5 cut(s) 147, 255, 266, 565, 792
BspCNI CTCAG 3 cut(s) 304, 519, 791
BspEI TCCGGA 1 cut(s) 291
BspLI GGNNCC 7 cut(s) 140, 296, 334, 546, 805, 1366, 1437
BspMAI CTGCAG 2 cut(s) 829, 997
BspMI ACCTGC 1 cut(s) 989
BspOI GCTAGC 1 cut(s) 474
BspPI GGATC 4 cut(s) 289, 302, 403, 1188
BspT107I GGYRCC 1 cut(s) 1364
BspTI CTTAAG 1 cut(s) 1084
BsrDI GCAATG 1 cut(s) 873
BsrI ACTGG 3 cut(s) 181, 824, 938
BssECI CCNNGG 9 cut(s) 142, 298, 328, 495, 694, 695, 793, 1201, 1340
BssMI GATC 7 cut(s) 294, 360, 395, 456, 1173, 1180, 1324
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 4 cut(s) 142, 793, 1201, 1340
Bst2UI CCWGG 4 cut(s) 497, 696, 1258, 1421
Bst4CI ACNGT 3 cut(s) 10, 88, 229
Bst6I CTCTTC 2 cut(s) 710, 1162
BstACI GRCGYC 1 cut(s) 57
BstAFI CTTAAG 1 cut(s) 1084
BstC8I GCNNGC 3 cut(s) 472, 476, 549
BstDEI CTNAG 3 cut(s) 312, 527, 778
BstDSI CCRYGG 1 cut(s) 1340
BstEII GGTNACC 2 cut(s) 88, 623
BstF5I GGATG 3 cut(s) 833, 1215, 1216
BstHHI GCGC 2 cut(s) 161, 633
BstKTI GATC 7 cut(s) 297, 363, 398, 459, 1176, 1183, 1327
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 7 cut(s) 294, 360, 395, 456, 1173, 1180, 1324
BstMWI GCNNNNNNNGC 3 cut(s) 386, 789, 1130
BstNI CCWGG 4 cut(s) 497, 696, 1258, 1421
BstNSI RCATGY 3 cut(s) 356, 1151, 1273
BstPI GGTNACC 2 cut(s) 88, 623
BstSCI CCNGG 7 cut(s) 298, 328, 495, 594, 694, 1256, 1419
BstSFI CTRYAG 4 cut(s) 193, 825, 924, 993
BstV1I GCAGC 2 cut(s) 465, 1007
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 2 cut(s) 294, 395
BstXI CCANNNNNNTGG 1 cut(s) 773
BstYI RGATCY 2 cut(s) 294, 395
BsuRI GGCC 5 cut(s) 147, 255, 266, 565, 792
BtgI CCRYGG 1 cut(s) 1340
BtsCI GGATG 3 cut(s) 833, 1215, 1216
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 1 cut(s) 834
BveI ACCTGC 1 cut(s) 989
Cac8I GCNNGC 3 cut(s) 472, 476, 549
CfoI GCGC 2 cut(s) 161, 633
Cfr13I GGNCC 2 cut(s) 123, 332
CsiI ACCWGGT 1 cut(s) 1419
Csp6I GTAC 3 cut(s) 230, 949, 1304
CviQI GTAC 3 cut(s) 230, 949, 1304
DdeI CTNAG 3 cut(s) 312, 527, 778
DpnI GATC 7 cut(s) 296, 362, 397, 458, 1175, 1182, 1326
DpnII GATC 7 cut(s) 294, 360, 395, 456, 1173, 1180, 1324
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 2 cut(s) 264, 563
Eam1104I CTCTTC 2 cut(s) 710, 1162
EarI CTCTTC 2 cut(s) 710, 1162
Eco130I CCWWGG 4 cut(s) 142, 793, 1201, 1340
Eco147I AGGCCT 2 cut(s) 147, 792
Eco47I GGWCC 2 cut(s) 123, 332
Eco91I GGTNACC 2 cut(s) 88, 623
EcoO65I GGTNACC 2 cut(s) 88, 623
EcoRI GAATTC 1 cut(s) 1077
EcoRII CCWGG 4 cut(s) 495, 694, 1256, 1419
EcoT14I CCWWGG 4 cut(s) 142, 793, 1201, 1340
EcoT22I ATGCAT 1 cut(s) 901
ErhI CCWWGG 4 cut(s) 142, 793, 1201, 1340
Esp3I CGTCTC 1 cut(s) 64
FaqI GGGAC 3 cut(s) 318, 1086, 1362
FauNDI CATATG 1 cut(s) 555
FbaI TGATCA 2 cut(s) 360, 1324
Fnu4HI GCNGC 2 cut(s) 479, 996
FokI GGATG 3 cut(s) 820, 1202, 1223
Fsp4HI GCNGC 2 cut(s) 479, 996
FspBI CTAG 4 cut(s) 143, 471, 665, 1224
GlaI GCGC 2 cut(s) 160, 632
GluI GCNGC 2 cut(s) 479, 996
GsaI CCCAGC 1 cut(s) 769
HaeIII GGCC 5 cut(s) 147, 255, 266, 565, 792
HapII CCGG 5 cut(s) 292, 300, 330, 381, 595
HhaI GCGC 2 cut(s) 161, 633
Hin1I GRCGYC 1 cut(s) 57
Hin6I GCGC 2 cut(s) 159, 631
HinP1I GCGC 2 cut(s) 159, 631
HincII GTYRAC 2 cut(s) 427, 1004
HindII GTYRAC 2 cut(s) 427, 1004
HinfI GANTC 2 cut(s) 270, 522
HpaII CCGG 5 cut(s) 292, 300, 330, 381, 595
HphI GGTGA 8 cut(s) 100, 208, 217, 355, 635, 700, 1375, 1435
Hpy166II GTNNAC 3 cut(s) 427, 990, 1004
Hpy188I TCNGA 5 cut(s) 84, 131, 313, 395, 1335
Hpy188III TCNNGA 5 cut(s) 121, 292, 436, 526, 1318
Hpy8I GTNNAC 3 cut(s) 427, 990, 1004
Hpy99I CGWCG 7 cut(s) 53, 56, 59, 71, 101, 104, 893
HpyAV CCTTC 5 cut(s) 136, 346, 847, 1263, 1397
HpyCH4III ACNGT 3 cut(s) 10, 88, 229
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 8 cut(s) 604, 672, 827, 899, 956, 995, 1292, 1311
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 789, 1130
HpyF3I CTNAG 3 cut(s) 312, 527, 778
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 57
HspAI GCGC 2 cut(s) 159, 631
Kpn2I TCCGGA 1 cut(s) 291
Ksp22I TGATCA 2 cut(s) 360, 1324
Kzo9I GATC 7 cut(s) 294, 360, 395, 456, 1173, 1180, 1324
LmnI GCTCC 5 cut(s) 31, 249, 544, 803, 1066
Lsp1109I GCAGC 2 cut(s) 465, 1007
LweI GCATC 4 cut(s) 842, 943, 1326, 1407
MabI ACCWGGT 1 cut(s) 1419
MaeI CTAG 4 cut(s) 143, 471, 665, 1224
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 4 cut(s) 88, 623, 757, 1282
MalI GATC 7 cut(s) 296, 362, 397, 458, 1175, 1182, 1326
MboI GATC 7 cut(s) 294, 360, 395, 456, 1173, 1180, 1324
MboII GAAGA 6 cut(s) 56, 178, 466, 643, 697, 1179
MflI RGATCY 2 cut(s) 294, 395
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 4 cut(s) 17, 657, 1036, 1077
MluNI TGGCCA 1 cut(s) 266
MlyI GAGTC 1 cut(s) 516
MmeI TCCRAC 2 cut(s) 719, 781
Mox20I TGGCCA 1 cut(s) 266
Mph1103I ATGCAT 1 cut(s) 901
MroI TCCGGA 1 cut(s) 291
MscI TGGCCA 1 cut(s) 266
MseI TTAA 1 cut(s) 1085
MslI CAYNNNNRTG 1 cut(s) 733
Msp20I TGGCCA 1 cut(s) 266
MspCI CTTAAG 1 cut(s) 1084
MspI CCGG 5 cut(s) 292, 300, 330, 381, 595
MspR9I CCNGG 7 cut(s) 300, 330, 497, 596, 696, 1258, 1421
MvaI CCWGG 4 cut(s) 497, 696, 1258, 1421
MwoI GCNNNNNNNGC 3 cut(s) 386, 789, 1130
NciI CCSGG 3 cut(s) 300, 330, 596
NcoI CCATGG 1 cut(s) 1340
NdeI CATATG 1 cut(s) 555
NdeII GATC 7 cut(s) 294, 360, 395, 456, 1173, 1180, 1324
NheI GCTAGC 1 cut(s) 470
NlaIV GGNNCC 7 cut(s) 140, 296, 334, 546, 805, 1366, 1437
NmeAIII GCCGAG 1 cut(s) 383
NmuCI GTSAC 2 cut(s) 88, 623
NsiI ATGCAT 1 cut(s) 901
NspI RCATGY 3 cut(s) 356, 1151, 1273
PasI CCCWGGG 1 cut(s) 695
PceI AGGCCT 2 cut(s) 147, 792
PciI ACATGT 2 cut(s) 1147, 1269
PcsI WCGNNNNNNNCGW 3 cut(s) 48, 54, 63
PfeI GAWTC 1 cut(s) 270
PflFI GACNNNGTC 1 cut(s) 56
PflMI CCANNNNNTGG 2 cut(s) 262, 502
PkrI GCNGC 2 cut(s) 480, 997
PleI GAGTC 1 cut(s) 516
PpsI GAGTC 1 cut(s) 516
PscI ACATGT 2 cut(s) 1147, 1269
PsiI TTATAA 1 cut(s) 488
Psp6I CCWGG 4 cut(s) 495, 694, 1256, 1419
PspEI GGTNACC 2 cut(s) 88, 623
PspFI CCCAGC 1 cut(s) 765
PspGI CCWGG 4 cut(s) 495, 694, 1256, 1419
PspN4I GGNNCC 7 cut(s) 140, 296, 334, 546, 805, 1366, 1437
PspPI GGNCC 2 cut(s) 123, 332
PstI CTGCAG 2 cut(s) 829, 997
PsuI RGATCY 2 cut(s) 294, 395
PsyI GACNNNGTC 1 cut(s) 56
RsaI GTAC 3 cut(s) 231, 950, 1305
RsaNI GTAC 3 cut(s) 230, 949, 1304
RseI CAYNNNNRTG 1 cut(s) 733
SaqAI TTAA 1 cut(s) 1085
SatI GCNGC 2 cut(s) 479, 996
Sau3AI GATC 7 cut(s) 294, 360, 395, 456, 1173, 1180, 1324
Sau96I GGNCC 2 cut(s) 123, 332
SchI GAGTC 1 cut(s) 516
ScrFI CCNGG 7 cut(s) 300, 330, 497, 596, 696, 1258, 1421
SexAI ACCWGGT 1 cut(s) 1419
SfaNI GCATC 4 cut(s) 842, 943, 1326, 1407
SfcI CTRYAG 4 cut(s) 193, 825, 924, 993
SinI GGWCC 2 cut(s) 123, 332
SmiMI CAYNNNNRTG 1 cut(s) 733
SmlI CTYRAG 1 cut(s) 1084
SmoI CTYRAG 1 cut(s) 1084
Sse9I AATT 4 cut(s) 17, 657, 1036, 1077
SseBI AGGCCT 2 cut(s) 147, 792
SsiI CCGC 1 cut(s) 451
SspMI CTAG 4 cut(s) 143, 471, 665, 1224
StuI AGGCCT 2 cut(s) 147, 792
StyD4I CCNGG 7 cut(s) 298, 328, 495, 594, 694, 1256, 1419
StyI CCWWGG 4 cut(s) 142, 793, 1201, 1340
TaaI ACNGT 3 cut(s) 10, 88, 229
TaiI ACGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 42, 69
TasI AATT 4 cut(s) 17, 657, 1036, 1077
TatI WGTACW 1 cut(s) 1303
TfiI GAWTC 1 cut(s) 270
Tru1I TTAA 1 cut(s) 1085
Tru9I TTAA 1 cut(s) 1085
TscAI CASTG 1 cut(s) 834
TseFI GTSAC 2 cut(s) 88, 623
TseI GCWGC 2 cut(s) 478, 995
Tsp45I GTSAC 2 cut(s) 88, 623
TspDTI ATGAA 1 cut(s) 250
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 1 cut(s) 834
Tth111I GACNNNGTC 1 cut(s) 56
Van91I CCANNNNNTGG 2 cut(s) 262, 502
Vha464I CTTAAG 1 cut(s) 1084
VpaK11BI GGWCC 2 cut(s) 123, 332
XapI RAATTY 1 cut(s) 1077
XceI RCATGY 3 cut(s) 356, 1151, 1273
XmaJI CCTAGG 1 cut(s) 142
XspI CTAG 4 cut(s) 143, 471, 665, 1224
ZraI GACGTC 1 cut(s) 58
Zsp2I ATGCAT 1 cut(s) 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.