Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0022286

Physical Location & Seq

Genomic Coordinates Forward (+)

21171934 .. 21172713

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1131100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCCATTAGCTCTCAAGATTTTGGGTTCCTTATTCCTTCACTGCAACAACAGTAAAGACTGGGAACATCAATGGAATGAGTTGAAAAAATTTCCCAATAAAGAAATTGAGAACATGTTGAGACTAAGTTACGAGGGATTAGAACGAAATGCAAGGGAGATATTTCTTGATATTGCATGTTTCTATAAGGGGACGACAATAGATTCTGCAAAAAAAATGTTAGATGTTCGTGGTTTCTTTGAGGGTGGAATTAAAGTTCTCATTGATAAGTCTCTGATATCAATTTCAAAATGGAACTGCTTGGAGATGCATGATTTGGTACAAGAAATGGGTAGGGCAATTGTTCATGAACAATGTATTGAAGAGCCTGGAAGACGCAGTAGGTTGTTCGATGCTGAGGATATTTATCACGTATTGAAAAATAATAGTGGAACTGAAACGGTTCAAGCAATAAATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

154

Amino Acids

17.78

Weight (kDa)

5.96

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_ROQ1	PF23282	49 - 118	2.6e-21	Disease resistance protein Roq1-like, winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022286)

Species	Orthologous Gene IDs
malus_domestica	MD10G1131100.v1.1
rosa_multiflora	Rmu_co8131060.1_g000001 Rmu_co8259083.1_g000001 Rmu_co8420673.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	89, 454
AfaI	GTAC	1 cut(s)	321
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	5 cut(s)	85, 288, 362, 418, 446
AjnI	CCWGG	1 cut(s)	367
AloI	GAACNNNNNNTCC	2 cut(s)	240, 272
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	115, 276
ApoI	RAATTY	2 cut(s)	89, 454
Asp700I	GAANNNNTTC	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	379
BbvCI	CCTCAGC	1 cut(s)	396
BciT130I	CCWGG	1 cut(s)	369
BcoDI	GTCTC	2 cut(s)	115, 276
Bme1390I	CCNGG	1 cut(s)	369
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	369
BmrI	ACTGGG	1 cut(s)	70
BmsI	GCATC	2 cut(s)	297, 382
BmuI	ACTGGG	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	379
Bpu10I	CCTNAGC	1 cut(s)	396
BsaAI	YACGTR	1 cut(s)	412
BsaBI	GATNNNNATC	1 cut(s)	405
Bse1I	ACTGG	1 cut(s)	65
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	369
BseJI	GATNNNNATC	1 cut(s)	405
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	205
BsmAI	GTCTC	2 cut(s)	115, 276
BsmFI	GGGAC	1 cut(s)	205
BspCNI	CTCAG	1 cut(s)	388
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	28
BspQI	GCTCTTC	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	65
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	2 cut(s)	53, 442
Bst6I	CTCTTC	1 cut(s)	357
BstBAI	YACGTR	1 cut(s)	412
BstDEI	CTNAG	2 cut(s)	125, 396
BstMAI	GTCTC	2 cut(s)	115, 276
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	2 cut(s)	118, 180
BstSCI	CCNGG	1 cut(s)	367
BstV2I	GAAGAC	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	40
CciI	TCATGA	1 cut(s)	346
CseI	GACGC	1 cut(s)	384
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	4 cut(s)	115, 177, 311, 347
CviJI	RGCY	2 cut(s)	11, 367
CviKI_1	RGCY	2 cut(s)	11, 367
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	2 cut(s)	125, 396
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco32I	GATATC	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	367
EcoRV	GATATC	1 cut(s)	279
EcoT22I	ATGCAT	1 cut(s)	312
FaeI	CATG	4 cut(s)	118, 180, 314, 350
FaiI	YATR	5 cut(s)	116, 178, 186, 312, 348
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	4 cut(s)	114, 176, 310, 346
HgaI	GACGC	1 cut(s)	384
Hin1II	CATG	4 cut(s)	118, 180, 314, 350
HinfI	GANTC	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	3 cut(s)	16, 167, 347
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	2 cut(s)	53, 442
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	5 cut(s)	45, 152, 176, 209, 310
HpyF3I	CTNAG	2 cut(s)	125, 396
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	4 cut(s)	118, 180, 314, 350
LguI	GCTCTTC	1 cut(s)	357
LpnPI	CCDG	3 cut(s)	46, 354, 381
LweI	GCATC	2 cut(s)	297, 382
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	1 cut(s)	128
MboII	GAAGA	2 cut(s)	374, 384
MfeI	CAATTG	1 cut(s)	339
MluCI	AATT	6 cut(s)	89, 105, 249, 282, 339, 454
MnlI	CCTC	3 cut(s)	127, 235, 391
Mph1103I	ATGCAT	1 cut(s)	312
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	2 cut(s)	252, 460
MspR9I	CCNGG	1 cut(s)	369
MunI	CAATTG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	369
NlaIII	CATG	4 cut(s)	118, 180, 314, 350
NlaIV	GGNNCC	1 cut(s)	28
NsiI	ATGCAT	1 cut(s)	312
NspI	RCATGY	2 cut(s)	118, 180
PagI	TCATGA	1 cut(s)	346
PciI	ACATGT	1 cut(s)	114
PciSI	GCTCTTC	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	1 cut(s)	203
Ppu21I	YACGTR	1 cut(s)	412
PscI	ACATGT	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	28
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	252, 460
ScrFI	CCNGG	1 cut(s)	369
SetI	ASST	3 cut(s)	13, 386, 414
SfaNI	GCATC	2 cut(s)	297, 382
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	6 cut(s)	89, 105, 249, 282, 339, 454
StyD4I	CCNGG	1 cut(s)	367
TaaI	ACNGT	2 cut(s)	53, 442
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	1 cut(s)	390
TasI	AATT	6 cut(s)	89, 105, 249, 282, 339, 454
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	252, 460
Tru9I	TTAA	2 cut(s)	252, 460
TscAI	CASTG	1 cut(s)	47
TspDTI	ATGAA	2 cut(s)	335, 363
TspRI	CASTG	1 cut(s)	47
XapI	RAATTY	2 cut(s)	89, 454
XceI	RCATGY	2 cut(s)	118, 180
XmnI	GAANNNNTTC	1 cut(s)	441
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.