Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8420673.1

Orthogroup ID

OG0022286

Physical Location & Seq

Genomic Coordinates Forward (+)

732 .. 1343

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8420673.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgcagttgctgaggaaatcagctaaccatgatgttcaaatatacaaggtggaggaactagataatgatgaagcacttcagctcttccacttaaatgattccgaagcaatccgttctggagaagcttgtacagaattagtaagaatggtgttgcattatgctgctggcattcccttagccctcaaaattttgggttccttattctgtcggtgcaagagcaaacaagaacgagaagattttttgaaaaaactgaaaaaattccccgaaaagaaacttcagaatgtgtatagagtaagttatgatgcattaggagaaaatgagagggagatgtttctgtatattgcatgttttcataaaggggaggaaatatgtagtgcaaaagcacaactggatgcatgtggcttatttgcgggtagtggaattgaagtcctgattgacatgtctctcatatcaatcaaagatgaccgttacctatggatgcatgatgtgatacaagaaatgggttgggcaattgaacgtgaaaaataccctgaaaagcctggaaagcgcagtaggttgtgtgcccctgaggatgtctgtcatgtgctggaaagaaataaggtaagagcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

203

Amino Acids

23.43

Weight (kDa)

6.33

Isoelectric Point (pI)

57.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022286)

Species	Orthologous Gene IDs
malus_domestica	MD10G1131100.v1.1
rosa_multiflora	Rmu_co8131060.1_g000001 Rmu_co8259083.1_g000001 Rmu_co8420673.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	410
AcsI	RAATTY	2 cut(s)	186, 257
AcuI	CTGAAG	2 cut(s)	62, 260
AfaI	GTAC	1 cut(s)	130
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	4 cut(s)	38, 244, 425, 515
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	3 cut(s)	23, 82, 125
AluI	AGCT	3 cut(s)	23, 82, 125
Alw26I	GTCTC	1 cut(s)	447
AlwNI	CAGNNNCTG	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	2 cut(s)	186, 257
Asp700I	GAANNNNTTC	2 cut(s)	75, 257
AspLEI	GCGC	1 cut(s)	549
AxyI	CCTNAGG	1 cut(s)	567
BaeGI	GKGCMC	1 cut(s)	565
BbvCI	CCTCAGC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	1 cut(s)	59
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	540
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	540
BmsI	GCATC	3 cut(s)	292, 382, 468
BpmI	CTGGAG	1 cut(s)	138
Bpu10I	CCTNAGC	2 cut(s)	11, 175
Bse1I	ACTGG	1 cut(s)	393
Bse21I	CCTNAGG	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	540
BseGI	GGATG	3 cut(s)	397, 483, 577
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	1 cut(s)	393
BseSI	GKGCMC	1 cut(s)	565
BseXI	GCAGC	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	447
BsmI	GAATGC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp1407I	TGTACA	1 cut(s)	128
BspACI	CCGC	1 cut(s)	410
BspCNI	CTCAG	1 cut(s)	559
BspLI	GGNNCC	1 cut(s)	196
BspQI	GCTCTTC	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	1 cut(s)	89
BstAUI	TGTACA	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	3 cut(s)	11, 175, 567
BstF5I	GGATG	3 cut(s)	397, 483, 577
BstHHI	GCGC	1 cut(s)	549
BstMAI	GTCTC	1 cut(s)	447
BstMWI	GCNNNNNNNGC	1 cut(s)	544
BstNI	CCWGG	1 cut(s)	540
BstNSI	RCATGY	3 cut(s)	348, 399, 442
BstSCI	CCNGG	1 cut(s)	538
BstSLI	GKGCMC	1 cut(s)	565
BstV1I	GCAGC	1 cut(s)	148
Bsu36I	CCTNAGG	1 cut(s)	567
BtsCI	GGATG	3 cut(s)	397, 483, 577
Cac8I	GCNNGC	1 cut(s)	166
CaiI	CAGNNNCTG	1 cut(s)	10
CfoI	GCGC	1 cut(s)	549
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	6 cut(s)	29, 345, 396, 439, 482, 581
CviJI	RGCY	7 cut(s)	23, 82, 125, 179, 402, 538, 608
CviKI_1	RGCY	7 cut(s)	23, 82, 125, 179, 402, 538, 608
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	3 cut(s)	11, 175, 567
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco57I	CTGAAG	2 cut(s)	62, 260
Eco81I	CCTNAGG	1 cut(s)	567
EcoRII	CCWGG	1 cut(s)	538
EcoT22I	ATGCAT	3 cut(s)	307, 397, 483
FaeI	CATG	6 cut(s)	32, 348, 399, 442, 485, 584
FatI	CATG	6 cut(s)	28, 344, 395, 438, 481, 580
FauI	CCCGC	1 cut(s)	403
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	3 cut(s)	404, 490, 584
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	138
HhaI	GCGC	1 cut(s)	549
Hin1II	CATG	6 cut(s)	32, 348, 399, 442, 485, 584
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	123
HinfI	GANTC	1 cut(s)	98
Hpy188I	TCNGA	2 cut(s)	103, 279
Hpy188III	TCNNGA	2 cut(s)	117, 430
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4IV	ACGT	1 cut(s)	517
HpyCH4V	TGCA	8 cut(s)	4, 154, 213, 305, 344, 377, 395, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	544
HpyF3I	CTNAG	3 cut(s)	11, 175, 567
HpySE526I	ACGT	1 cut(s)	517
Hsp92II	CATG	6 cut(s)	32, 348, 399, 442, 485, 584
HspAI	GCGC	1 cut(s)	547
LguI	GCTCTTC	1 cut(s)	89
LpnPI	CCDG	9 cut(s)	102, 150, 374, 443, 525, 543, 552, 572, 579
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	3 cut(s)	292, 382, 468
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	1 cut(s)	517
MaeIII	GTNAC	1 cut(s)	467
MboII	GAAGA	2 cut(s)	76, 245
MfeI	CAATTG	1 cut(s)	510
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	5 cut(s)	134, 186, 257, 420, 510
MnlI	CCTC	6 cut(s)	6, 46, 191, 315, 355, 562
Mph1103I	ATGCAT	3 cut(s)	307, 397, 483
MroXI	GAANNNNTTC	2 cut(s)	75, 257
MseI	TTAA	1 cut(s)	92
MslI	CAYNNNNRTG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	540
MunI	CAATTG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	1 cut(s)	544
NlaIII	CATG	6 cut(s)	32, 348, 399, 442, 485, 584
NlaIV	GGNNCC	1 cut(s)	196
NsiI	ATGCAT	3 cut(s)	307, 397, 483
NspI	RCATGY	3 cut(s)	348, 399, 442
PciI	ACATGT	1 cut(s)	438
PciSI	GCTCTTC	1 cut(s)	89
PctI	GAATGC	1 cut(s)	168
PdmI	GAANNNNTTC	2 cut(s)	75, 257
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	163
PscI	ACATGT	1 cut(s)	438
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	93
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	1 cut(s)	565
SetI	ASST	8 cut(s)	25, 51, 84, 127, 474, 520, 557, 603
SfaNI	GCATC	3 cut(s)	292, 382, 468
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	5 cut(s)	134, 186, 257, 420, 510
SsiI	CCGC	1 cut(s)	410
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	538
TaaI	ACNGT	1 cut(s)	467
TaiI	ACGT	1 cut(s)	520
TasI	AATT	5 cut(s)	134, 186, 257, 420, 510
TatI	WGTACW	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	2 cut(s)	84, 341
TspGWI	ACGGA	1 cut(s)	101
XapI	RAATTY	2 cut(s)	186, 257
XceI	RCATGY	3 cut(s)	348, 399, 442
XmnI	GAANNNNTTC	2 cut(s)	75, 257
XspI	CTAG	1 cut(s)	59
Zsp2I	ATGCAT	3 cut(s)	307, 397, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.