Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8131060.1

Orthogroup ID

OG0022286

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 499

Gene Structure 499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8131060.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 499 bp

ggtggtgcattatgctgcgggaattcccttagcccttaaaatatggggttccttatttcgtcgatgcaagagcacacaagagcgggagagtttcttgaaaaagttgaaaaggtttcctgaaaaggaacttcaagatgtgtataggataagttatgatgcattaggagaaaatgagagggagatatttctttatatcgcatgtttccacaaaggagtgaatgtaaatagagcaaaagaacaattggatgcatgtgaattatgtgcggatagtggaatcaacattctcattgatatgtctctgatatcaatcagagacaaatggcggacagaaagaactggttacttgtggatgcatgatttgatacaagaaatgggttgggcaattgtgcgtgaacaacatccgaagcctggaaagcgcagtaggctgtgtaccccggaggacatctgttatgtgttggaaaagaataaggtaatggcctcattcattgacattgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

165

Amino Acids

19.28

Weight (kDa)

8.52

Isoelectric Point (pI)

55.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022286)

Species	Orthologous Gene IDs
malus_domestica	MD10G1131100.v1.1
rosa_multiflora	Rmu_co8131060.1_g000001 Rmu_co8259083.1_g000001 Rmu_co8420673.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	83
AciI	CCGC	4 cut(s)	18, 83, 264, 323
AcsI	RAATTY	1 cut(s)	22
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	3 cut(s)	98, 107, 132
AjnI	CCWGG	1 cut(s)	407
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	2 cut(s)	301, 307
AoxI	GGCC	1 cut(s)	475
ApeKI	GCWGC	1 cut(s)	15
ApoI	RAATTY	1 cut(s)	22
AspLEI	GCGC	1 cut(s)	418
AsuC2I	CCSGG	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	2
BciT130I	CCWGG	1 cut(s)	409
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	2 cut(s)	301, 307
BisI	GCNGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	17
Bme1390I	CCNGG	2 cut(s)	409, 435
BmiI	GGNNCC	1 cut(s)	50
BmrFI	CCNGG	2 cut(s)	409, 435
BmsI	GCATC	4 cut(s)	54, 146, 236, 340
Bpu10I	CCTNAGC	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	435
BsaBI	GATNNNNATC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	433
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse1I	ACTGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	490
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	409
BseDI	CCNNGG	1 cut(s)	433
BseGI	GGATG	3 cut(s)	251, 355, 398
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMI	GCAATG	1 cut(s)	490
BseNI	ACTGG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	2
BshFI	GGCC	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	435
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	2 cut(s)	301, 307
BsnI	GGCC	1 cut(s)	477
Bsp1286I	GDGCHC	1 cut(s)	75
BspACI	CCGC	4 cut(s)	18, 83, 264, 323
BspANI	GGCC	1 cut(s)	477
BspLI	GGNNCC	1 cut(s)	50
BsrBI	CCGCTC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	409
BstDEI	CTNAG	2 cut(s)	29, 496
BstF5I	GGATG	3 cut(s)	251, 355, 398
BstHHI	GCGC	1 cut(s)	418
BstMAI	GTCTC	2 cut(s)	301, 307
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 422
BstNI	CCWGG	1 cut(s)	409
BstNSI	RCATGY	2 cut(s)	202, 253
BstSCI	CCNGG	2 cut(s)	407, 433
BstV1I	GCAGC	1 cut(s)	2
BsuRI	GGCC	1 cut(s)	477
BtsCI	GGATG	3 cut(s)	251, 355, 398
CfoI	GCGC	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	3 cut(s)	199, 250, 354
CviJI	RGCY	4 cut(s)	33, 407, 425, 477
CviKI_1	RGCY	4 cut(s)	33, 407, 425, 477
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	2 cut(s)	29, 496
EciI	GGCGGA	1 cut(s)	338
Eco32I	GATATC	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	407
EcoRV	GATATC	1 cut(s)	304
EcoT22I	ATGCAT	3 cut(s)	161, 251, 355
FaeI	CATG	3 cut(s)	202, 253, 357
FatI	CATG	3 cut(s)	198, 249, 353
FauI	CCCGC	2 cut(s)	11, 76
Fnu4HI	GCNGC	1 cut(s)	16
FokI	GGATG	3 cut(s)	258, 362, 385
Fsp4HI	GCNGC	1 cut(s)	16
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	1 cut(s)	16
HaeIII	GGCC	1 cut(s)	477
HapII	CCGG	1 cut(s)	435
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	3 cut(s)	202, 253, 357
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	1 cut(s)	435
Hpy166II	GTNNAC	2 cut(s)	393, 430
Hpy188I	TCNGA	3 cut(s)	301, 312, 403
Hpy188III	TCNNGA	3 cut(s)	95, 117, 132
Hpy8I	GTNNAC	2 cut(s)	393, 430
Hpy99I	CGWCG	1 cut(s)	64
HpyCH4V	TGCA	5 cut(s)	8, 67, 159, 249, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 422
HpyF3I	CTNAG	2 cut(s)	29, 496
Hsp92II	CATG	3 cut(s)	202, 253, 357
HspAI	GCGC	1 cut(s)	416
LpnPI	CCDG	5 cut(s)	130, 322, 394, 421, 448
Lsp1109I	GCAGC	1 cut(s)	2
LweI	GCATC	4 cut(s)	54, 146, 236, 340
MaeIII	GTNAC	1 cut(s)	339
MbiI	CCGCTC	1 cut(s)	83
MfeI	CAATTG	2 cut(s)	240, 382
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	4 cut(s)	22, 240, 255, 382
MmeI	TCCRAC	1 cut(s)	436
MnlI	CCTC	3 cut(s)	169, 431, 488
Mph1103I	ATGCAT	3 cut(s)	161, 251, 355
MseI	TTAA	1 cut(s)	37
MslI	CAYNNNNRTG	1 cut(s)	291
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	2 cut(s)	409, 435
MunI	CAATTG	2 cut(s)	240, 382
MvaI	CCWGG	1 cut(s)	409
MwoI	GCNNNNNNNGC	2 cut(s)	413, 422
NciI	CCSGG	1 cut(s)	435
NlaIII	CATG	3 cut(s)	202, 253, 357
NlaIV	GGNNCC	1 cut(s)	50
NsiI	ATGCAT	3 cut(s)	161, 251, 355
NspI	RCATGY	2 cut(s)	202, 253
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	407
PspN4I	GGNNCC	1 cut(s)	50
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	37
SatI	GCNGC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	409, 435
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	2 cut(s)	114, 472
SfaNI	GCATC	4 cut(s)	54, 146, 236, 340
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	4 cut(s)	22, 240, 255, 382
SsiI	CCGC	4 cut(s)	18, 83, 264, 323
StyD4I	CCNGG	2 cut(s)	407, 433
TaqI	TCGA	1 cut(s)	62
TasI	AATT	4 cut(s)	22, 240, 255, 382
TfiI	GAWTC	1 cut(s)	274
Tru1I	TTAA	1 cut(s)	37
Tru9I	TTAA	1 cut(s)	37
TseI	GCWGC	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	473
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	2 cut(s)	202, 253
Zsp2I	ATGCAT	3 cut(s)	161, 251, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.