Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8259083.1

Orthogroup ID

OG0022286

Physical Location & Seq

Genomic Coordinates Forward (+)

34 .. 606

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8259083.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atggaggaattaaatggtgttgaatctcttcagctcttccattcaaatgctgccacacattctacacaaaattcagaaattttagagcaggtggtagatcatgctgcaggcattccattagcccttaacattttgcgttcactattccttcggtgcaagagcaaagaagaacaggaactgttgtgggaaaaattgaaaaagtttcccaacaaaaaacttcagaatgtgtacagagcaagttacgatggattagaagaaaatgagagggagatattccttgatattgcatgttttcacaaaagggagaaactttgtgatgcgaaaagaatgttagctgcctgtggtttatttccggatgatggaattgaatgtctcattgatatgtctctcatatcagttgaagataactgcatatggatgcacgatgtgatccaagaaatgggttgggagattatccgtgaagaaagtactaaaaagccgggagagcgcagtaggttgcacaatggtgaggatgtctatcatgtattgaaaaggaatacggtaagagctcaatgcattgactttttcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

190

Amino Acids

22.1

Weight (kDa)

5.31

Isoelectric Point (pI)

66.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022286)

Species	Orthologous Gene IDs
malus_domestica	MD10G1131100.v1.1
rosa_multiflora	Rmu_co8131060.1_g000001 Rmu_co8259083.1_g000001 Rmu_co8420673.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	79
Acc36I	ACCTGC	1 cut(s)	79
AccB7I	CCANNNNNTGG	1 cut(s)	439
AccIII	TCCGGA	1 cut(s)	352
AclWI	GGATC	1 cut(s)	424
AcsI	RAATTY	2 cut(s)	70, 78
AcuI	CTGAAG	2 cut(s)	14, 203
AdeI	CACNNNGTG	1 cut(s)	427
AfaI	GTAC	2 cut(s)	230, 469
AfiI	CCNNNNNNNGG	2 cut(s)	359, 439
AgsI	TTSAA	6 cut(s)	23, 45, 196, 368, 401, 529
AleI	CACNNNNGTG	1 cut(s)	504
AluBI	AGCT	3 cut(s)	34, 335, 548
AluI	AGCT	3 cut(s)	34, 335, 548
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	2 cut(s)	377, 390
AlwI	GGATC	1 cut(s)	424
AlwNI	CAGNNNCTG	1 cut(s)	178
Aor13HI	TCCGGA	1 cut(s)	352
ApeKI	GCWGC	3 cut(s)	50, 104, 335
ApoI	RAATTY	2 cut(s)	70, 78
Asp700I	GAANNNNTTC	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	489
AsuC2I	CCSGG	1 cut(s)	480
AsuHPI	GGTGA	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	550
Bbv12I	GWGCWC	1 cut(s)	550
BbvI	GCAGC	3 cut(s)	37, 91, 322
BccI	CCATC	2 cut(s)	239, 353
BcnI	CCSGG	1 cut(s)	480
BcoDI	GTCTC	2 cut(s)	377, 390
BfmI	CTRYAG	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	79
BisI	GCNGC	3 cut(s)	51, 105, 336
BlsI	GCNGC	3 cut(s)	52, 106, 337
BmcAI	AGTACT	1 cut(s)	469
Bme1390I	CCNGG	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	480
BmsI	GCATC	2 cut(s)	307, 408
BpuMI	CCSGG	1 cut(s)	480
BsaBI	GATNNNNATC	1 cut(s)	516
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 439
Bse8I	GATNNNNATC	1 cut(s)	516
BseAI	TCCGGA	1 cut(s)	352
BseGI	GGATG	3 cut(s)	361, 423, 517
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	2 cut(s)	359, 439
BseXI	GCAGC	3 cut(s)	37, 91, 322
BsiHKAI	GWGCWC	1 cut(s)	550
BsiSI	CCGG	2 cut(s)	353, 479
BslI	CCNNNNNNNGG	2 cut(s)	359, 439
BsmAI	GTCTC	2 cut(s)	377, 390
BsmI	GAATGC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp13I	TCCGGA	1 cut(s)	352
Bsp1407I	TGTACA	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	97, 429
BspEI	TCCGGA	1 cut(s)	352
BspMAI	CTGCAG	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	424
BspQI	GCTCTTC	1 cut(s)	41
BsrGI	TGTACA	1 cut(s)	228
BssMI	GATC	2 cut(s)	97, 429
Bst4CI	ACNGT	2 cut(s)	180, 541
Bst6I	CTCTTC	2 cut(s)	33, 41
BstAUI	TGTACA	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	109
BstF5I	GGATG	3 cut(s)	361, 423, 517
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	2 cut(s)	100, 432
BstMAI	GTCTC	2 cut(s)	377, 390
BstMBI	GATC	2 cut(s)	97, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	484
BstNSI	RCATGY	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	478
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	3 cut(s)	37, 91, 322
BtsCI	GGATG	3 cut(s)	361, 423, 517
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	109
CaiI	CAGNNNCTG	1 cut(s)	178
CfoI	GCGC	1 cut(s)	489
Csp6I	GTAC	2 cut(s)	229, 468
CviAII	CATG	3 cut(s)	101, 288, 521
CviJI	RGCY	5 cut(s)	34, 122, 335, 478, 548
CviKI_1	RGCY	5 cut(s)	34, 122, 335, 478, 548
CviQI	GTAC	2 cut(s)	229, 468
DpnI	GATC	2 cut(s)	99, 431
DpnII	GATC	2 cut(s)	97, 429
DraIII	CACNNNGTG	1 cut(s)	427
Eam1104I	CTCTTC	2 cut(s)	33, 41
EarI	CTCTTC	2 cut(s)	33, 41
Ecl136II	GAGCTC	1 cut(s)	548
Eco24I	GRGCYC	1 cut(s)	550
Eco53kI	GAGCTC	1 cut(s)	548
Eco57I	CTGAAG	2 cut(s)	14, 203
EcoICRI	GAGCTC	1 cut(s)	548
EcoT22I	ATGCAT	1 cut(s)	557
EcoT38I	GRGCYC	1 cut(s)	550
FaeI	CATG	3 cut(s)	104, 291, 524
FaiI	YATR	7 cut(s)	102, 289, 383, 392, 413, 415, 522
FatI	CATG	3 cut(s)	100, 287, 520
FauNDI	CATATG	1 cut(s)	413
Fnu4HI	GCNGC	3 cut(s)	51, 105, 336
FokI	GGATG	3 cut(s)	368, 430, 524
FriOI	GRGCYC	1 cut(s)	550
Fsp4HI	GCNGC	3 cut(s)	51, 105, 336
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	3 cut(s)	51, 105, 336
HapII	CCGG	2 cut(s)	353, 479
HhaI	GCGC	1 cut(s)	489
Hin1II	CATG	3 cut(s)	104, 291, 524
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	2 cut(s)	353, 479
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	2 cut(s)	140, 229
Hpy188I	TCNGA	2 cut(s)	76, 222
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	2 cut(s)	140, 229
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	2 cut(s)	180, 541
HpyCH4V	TGCA	7 cut(s)	107, 156, 287, 411, 421, 499, 555
HpyF10VI	GCNNNNNNNGC	1 cut(s)	484
Hsp92II	CATG	3 cut(s)	104, 291, 524
HspAI	GCGC	1 cut(s)	487
Kpn2I	TCCGGA	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	97, 429
LguI	GCTCTTC	1 cut(s)	41
LpnPI	CCDG	6 cut(s)	74, 93, 158, 352, 366, 492
Lsp1109I	GCAGC	3 cut(s)	37, 91, 322
LweI	GCATC	2 cut(s)	307, 408
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	2 cut(s)	99, 431
MboI	GATC	2 cut(s)	97, 429
MboII	GAAGA	6 cut(s)	20, 28, 179, 266, 413, 473
MhlI	GDGCHC	1 cut(s)	550
MluCI	AATT	5 cut(s)	8, 70, 78, 191, 363
MnlI	CCTC	2 cut(s)	258, 502
Mph1103I	ATGCAT	1 cut(s)	557
MroI	TCCGGA	1 cut(s)	352
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	2 cut(s)	11, 126
MslI	CAYNNNNRTG	4 cut(s)	45, 380, 416, 504
MspI	CCGG	2 cut(s)	353, 479
MspR9I	CCNGG	1 cut(s)	480
Mva1269I	GAATGC	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	484
NciI	CCSGG	1 cut(s)	480
NdeI	CATATG	1 cut(s)	413
NdeII	GATC	2 cut(s)	97, 429
NlaIII	CATG	3 cut(s)	104, 291, 524
NsiI	ATGCAT	1 cut(s)	557
NspI	RCATGY	1 cut(s)	291
OliI	CACNNNNGTG	1 cut(s)	504
PaqCI	CACCTGC	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	41
PctI	GAATGC	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	23
PflMI	CCANNNNNTGG	1 cut(s)	439
PkrI	GCNGC	3 cut(s)	52, 106, 337
Psp124BI	GAGCTC	1 cut(s)	550
PstI	CTGCAG	1 cut(s)	109
PstNI	CAGNNNCTG	1 cut(s)	178
RsaI	GTAC	2 cut(s)	230, 469
RsaNI	GTAC	2 cut(s)	229, 468
RseI	CAYNNNNRTG	4 cut(s)	45, 380, 416, 504
SacI	GAGCTC	1 cut(s)	550
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	11, 126
SatI	GCNGC	3 cut(s)	51, 105, 336
Sau3AI	GATC	2 cut(s)	97, 429
ScaI	AGTACT	1 cut(s)	469
ScrFI	CCNGG	1 cut(s)	480
SduI	GDGCHC	1 cut(s)	550
SetI	ASST	5 cut(s)	36, 93, 337, 497, 550
SfaNI	GCATC	2 cut(s)	307, 408
SfcI	CTRYAG	1 cut(s)	105
SmiMI	CAYNNNNRTG	4 cut(s)	45, 380, 416, 504
Sse9I	AATT	5 cut(s)	8, 70, 78, 191, 363
SstI	GAGCTC	1 cut(s)	550
StyD4I	CCNGG	1 cut(s)	478
TaaI	ACNGT	2 cut(s)	180, 541
TasI	AATT	5 cut(s)	8, 70, 78, 191, 363
TatI	WGTACW	2 cut(s)	228, 467
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	2 cut(s)	11, 126
Tru9I	TTAA	2 cut(s)	11, 126
TseI	GCWGC	3 cut(s)	50, 104, 335
TspGWI	ACGGA	1 cut(s)	446
Van91I	CCANNNNNTGG	1 cut(s)	439
XapI	RAATTY	2 cut(s)	70, 78
XceI	RCATGY	1 cut(s)	291
XmnI	GAANNNNTTC	1 cut(s)	27
ZrmI	AGTACT	1 cut(s)	469
Zsp2I	ATGCAT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.