Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0019735

Physical Location & Seq

Genomic Coordinates Reverse (-)

30844453 .. 30845998

Gene Structure 1546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1209400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGGGAAAGAGGAATAAAAAGAAAGACGCTTTACTGGCTCCTCTCAGTTTTCAATAATCCAGCCCCTCTGTTACATTGTGGGTTTAAGAAAGGCATGTGGAGGAAGATGACACCCAAAGGCTTGACAATGAATAAGTTTGTGGAAGGACCTGATGGAACACTTGTTCATGATAGTTCTTATGTGGGAGAGGATGCATGGTATGATGATCCACAGCTTCCTCAGGACAATGTGAAACAAGTTATTGACAGTGATGTAAAATTTAATCCAGAGGAAAAGAAGGAACTAGAGGAAGACTTGGGAATATCGGCTGAAGTTCAACAAGATAGTGGAACATGGCGTGAAAGGCTTCAAAAATGGAAAGAGATCCTTCAGAAGGAAAAGTTAGCTGAGCAGTTGGATTCTGCCAATTCTAAGTATGTAGTTAAATTCGACATGAAAGAGGTTGAAAACAGTCTTTGCAAAGATGTGGTAGAAAAGGTTACAGAGTCACAGGGAACAAGGGCATTATGGATAGCTAAAAGATGGTGGTTGTATCGTCCTAGACTTCCGTATACCTACTTTCTTCAAAAGCTTGACTGCTCTGACGTTGCTGCTGTTGTATTTACGGAAGACCTAAAAAGGATATATGTTACTATGAAAGAAGGTTTTCCATTAGAATATGTTGTTGATATCCCCCTAGACCCTTGCTTGTTTGAGATTATCTCAAGTTCTGGAGTTGAAGTTGATCTTCTTCAAAAGTGCCAGATTCACTACTTTATGAAAGTTCTGATTGCATTGGTGCCTGGGATACTTATTCTCTGGCTTATACGCGAGTCTGTGATGCACATCACTTCTAAGCGATTCCTTTACAAAAAGTATAATCAACTATTTGATATGGCTTATGCGGAAAACTTTATCCTGCCAGTTGGAGATGTGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

308

Amino Acids

35.74

Weight (kDa)

5.75

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019735)

Species	Orthologous Gene IDs
malus_domestica	MD10G1209400.v1.1
rosa_multiflora	Rmu_sc0000084.1_g000041 Rmu_sc0000851.1_g000001 Rmu_sc0001307.1_g000022
rosa_roxburghii	Rroxscaffold_7G00195670
rosa_samantha	Rh6DG222600
rosa_wichuraiana	Rw1G017720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	781
AccI	GTMKAC	1 cut(s)	554
AccII	CGCG	1 cut(s)	813
AciI	CCGC	1 cut(s)	887
AclWI	GGATC	2 cut(s)	203, 361
AcsI	RAATTY	2 cut(s)	260, 428
AcuI	CTGAAG	2 cut(s)	333, 356
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	7 cut(s)	55, 320, 353, 449, 569, 722, 737
AjnI	CCWGG	1 cut(s)	784
AloI	GAACNNNNNNTCC	2 cut(s)	150, 182
AluBI	AGCT	4 cut(s)	217, 389, 518, 574
AluI	AGCT	4 cut(s)	217, 389, 518, 574
AlwI	GGATC	2 cut(s)	203, 361
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	2 cut(s)	260, 428
Asp700I	GAANNNNTTC	2 cut(s)	348, 648
AspS9I	GGNCC	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	149
AxyI	CCTNAGG	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	781
BbsI	GAAGAC	2 cut(s)	300, 618
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	2 cut(s)	149, 519
BciT130I	CCWGG	1 cut(s)	786
BciVI	GTATCC	1 cut(s)	783
BfaI	CTAG	3 cut(s)	287, 543, 680
BfuI	GTATCC	1 cut(s)	783
BisI	GCNGC	1 cut(s)	594
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	595
Bme1390I	CCNGG	1 cut(s)	786
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	2 cut(s)	41, 783
BmrFI	CCNGG	1 cut(s)	786
BmsI	GCATC	2 cut(s)	184, 813
BpiI	GAAGAC	2 cut(s)	300, 618
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
BpmI	CTGGAG	1 cut(s)	735
Bpu1102I	GCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	691
BsaBI	GATNNNNATC	1 cut(s)	827
BsaJI	CCNNGG	1 cut(s)	785
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse1I	ACTGG	2 cut(s)	41, 905
Bse21I	CCTNAGG	1 cut(s)	222
Bse8I	GATNNNNATC	1 cut(s)	827
BseBI	CCWGG	1 cut(s)	786
BseDI	CCNNGG	1 cut(s)	785
BseGI	GGATG	1 cut(s)	199
BseJI	GATNNNNATC	1 cut(s)	827
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMII	CTCAG	3 cut(s)	60, 236, 381
BseNI	ACTGG	2 cut(s)	41, 905
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	580
Bsh1236I	CGCG	1 cut(s)	813
BshNI	GGYRCC	1 cut(s)	781
BslI	CCNNNNNNNGG	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	208, 366, 727
Bsp1720I	GCTNAGC	1 cut(s)	390
BspACI	CCGC	1 cut(s)	887
BspCNI	CTCAG	3 cut(s)	59, 235, 382
BspFNI	CGCG	1 cut(s)	813
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	41, 783
BspPI	GGATC	2 cut(s)	203, 361
BspT107I	GGYRCC	1 cut(s)	781
BsrI	ACTGG	2 cut(s)	41, 905
BssECI	CCNNGG	1 cut(s)	785
BssMI	GATC	3 cut(s)	208, 366, 727
BssNAI	GTATAC	1 cut(s)	555
Bst1107I	GTATAC	1 cut(s)	555
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	2 cut(s)	251, 455
BstDEI	CTNAG	5 cut(s)	46, 222, 390, 414, 837
BstENI	CCTNNNNNAGG	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	813
BstKTI	GATC	3 cut(s)	211, 369, 730
BstMBI	GATC	3 cut(s)	208, 366, 727
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 346
BstNI	CCWGG	1 cut(s)	786
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	784
BstUI	CGCG	1 cut(s)	813
BstV1I	GCAGC	1 cut(s)	580
BstV2I	GAAGAC	2 cut(s)	300, 618
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
BstZ17I	GTATAC	1 cut(s)	555
Bsu36I	CCTNAGG	1 cut(s)	222
BsuI	GTATCC	1 cut(s)	783
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	256
CciI	TCATGA	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	149
CseI	GACGC	1 cut(s)	37
CviAII	CATG	5 cut(s)	97, 170, 198, 336, 436
DdeI	CTNAG	5 cut(s)	46, 222, 390, 414, 837
DpnI	GATC	3 cut(s)	210, 368, 729
DpnII	GATC	3 cut(s)	208, 366, 727
Eco32I	GATATC	1 cut(s)	673
Eco47I	GGWCC	1 cut(s)	149
Eco57I	CTGAAG	2 cut(s)	333, 356
Eco81I	CCTNAGG	1 cut(s)	222
EcoNI	CCTNNNNNAGG	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	784
EcoRV	GATATC	1 cut(s)	673
EcoT22I	ATGCAT	1 cut(s)	199
FaeI	CATG	5 cut(s)	100, 173, 201, 339, 439
FalI	AAGNNNNNCTT	4 cut(s)	354, 386, 714, 746
FatI	CATG	5 cut(s)	96, 169, 197, 335, 435
FblI	GTMKAC	1 cut(s)	554
Fnu4HI	GCNGC	1 cut(s)	594
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	594
FspBI	CTAG	3 cut(s)	287, 543, 680
GluI	GCNGC	1 cut(s)	594
GsuI	CTGGAG	1 cut(s)	735
HgaI	GACGC	1 cut(s)	37
Hin1II	CATG	5 cut(s)	100, 173, 201, 339, 439
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	5 cut(s)	401, 488, 748, 815, 843
Hpy166II	GTNNAC	1 cut(s)	555
Hpy188I	TCNGA	3 cut(s)	375, 586, 771
Hpy188III	TCNNGA	4 cut(s)	170, 224, 269, 714
Hpy8I	GTNNAC	1 cut(s)	555
HpyAV	CCTTC	5 cut(s)	140, 274, 370, 380, 638
HpyCH4III	ACNGT	2 cut(s)	251, 455
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	4 cut(s)	197, 462, 776, 826
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 346
HpyF3I	CTNAG	5 cut(s)	46, 222, 390, 414, 837
HpySE526I	ACGT	1 cut(s)	588
Hsp92II	CATG	5 cut(s)	100, 173, 201, 339, 439
Kzo9I	GATC	3 cut(s)	208, 366, 727
LmnI	GCTCC	1 cut(s)	45
Lsp1109I	GCAGC	1 cut(s)	580
LweI	GCATC	2 cut(s)	184, 813
MaeI	CTAG	3 cut(s)	287, 543, 680
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	4 cut(s)	72, 481, 489, 631
MalI	GATC	3 cut(s)	210, 368, 729
MboI	GATC	3 cut(s)	208, 366, 727
MboII	GAAGA	6 cut(s)	118, 305, 557, 623, 722, 725
MflI	RGATCY	1 cut(s)	366
MluCI	AATT	3 cut(s)	260, 409, 428
MlyI	GAGTC	2 cut(s)	497, 824
MmeI	TCCRAC	2 cut(s)	378, 889
MnlI	CCTC	9 cut(s)	5, 53, 78, 96, 184, 231, 265, 283, 436
Mph1103I	ATGCAT	1 cut(s)	199
MroXI	GAANNNNTTC	2 cut(s)	348, 648
MseI	TTAA	3 cut(s)	87, 264, 426
MspR9I	CCNGG	1 cut(s)	786
MvaI	CCWGG	1 cut(s)	786
MvnI	CGCG	1 cut(s)	813
MwoI	GCNNNNNNNGC	2 cut(s)	37, 346
NdeII	GATC	3 cut(s)	208, 366, 727
NlaIII	CATG	5 cut(s)	100, 173, 201, 339, 439
NlaIV	GGNNCC	2 cut(s)	41, 783
NmuCI	GTSAC	1 cut(s)	489
NsiI	ATGCAT	1 cut(s)	199
NspI	RCATGY	1 cut(s)	100
PagI	TCATGA	1 cut(s)	169
PdmI	GAANNNNTTC	2 cut(s)	348, 648
PfeI	GAWTC	3 cut(s)	401, 748, 843
PkrI	GCNGC	1 cut(s)	595
PleI	GAGTC	2 cut(s)	496, 823
PpsI	GAGTC	2 cut(s)	496, 823
PpuMI	RGGWCCY	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	784
PspN4I	GGNNCC	2 cut(s)	41, 783
PspPI	GGNCC	1 cut(s)	149
PspPPI	RGGWCCY	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	366
SaqAI	TTAA	3 cut(s)	87, 264, 426
SatI	GCNGC	1 cut(s)	594
Sau3AI	GATC	3 cut(s)	208, 366, 727
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	2 cut(s)	497, 824
ScrFI	CCNGG	1 cut(s)	786
SfaNI	GCATC	2 cut(s)	184, 813
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	706
SmoI	CTYRAG	1 cut(s)	706
Sse9I	AATT	3 cut(s)	260, 409, 428
SsiI	CCGC	1 cut(s)	887
SspMI	CTAG	3 cut(s)	287, 543, 680
StyD4I	CCNGG	1 cut(s)	784
TaaI	ACNGT	2 cut(s)	251, 455
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	1 cut(s)	432
TasI	AATT	3 cut(s)	260, 409, 428
TfiI	GAWTC	3 cut(s)	401, 748, 843
Tru1I	TTAA	3 cut(s)	87, 264, 426
Tru9I	TTAA	3 cut(s)	87, 264, 426
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	489
TseI	GCWGC	1 cut(s)	593
Tsp45I	GTSAC	1 cut(s)	489
TspDTI	ATGAA	5 cut(s)	146, 158, 452, 653, 776
TspGWI	ACGGA	2 cut(s)	540, 623
TspRI	CASTG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	149
XagI	CCTNNNNNAGG	1 cut(s)	374
XapI	RAATTY	2 cut(s)	260, 428
XceI	RCATGY	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	554
XmnI	GAANNNNTTC	2 cut(s)	348, 648
XspI	CTAG	3 cut(s)	287, 543, 680
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.