Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0019735

Physical Location & Seq

Genomic Coordinates Reverse (-)

39740499 .. 39750951

Gene Structure 10453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG222600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAGGCTAGCGATTGGTGGAGCTGTGGCCAGCGGGTCAGGGAACCATAGCCGGCCGGTCAGCGATGCTATGGTGTCAAAGAGCTTGCTGAGTTTGTCTGAGATTTTGATCAAGTACATAGCATTGAAGGAGCAGAAAGTGTTGGACCATGAGGAGGTTCAGGTGGAGCAAGAGAAAACCAGGGTTCAGAAGTTGTTGAATAGGTTGCAGAACTCGATAAACGTTTACAATGCCAGTGGAAACCCCCAAATCTCCAAAGTTTCGGATTCGGCACCAAAACAAATGCACATGGCTCCTCAATCTCGCCTATCTCATGGGTCTTCTACAGTTTCGTGCCAAAGAATATATGTAGCAATTCGAGCTCCTATCCAAGATCGCCAGAGGAAAGAGTTGACGGAGGCTTATATGGAGGCAGTGATTCCTGAGCCATCTCCGAGTAATGTTAGAAAGCTTAAGAAGAGTATGTGGAGGAAGACGATGCCCAAAGGCCTAGAAATGAAGAAGTTTGTTGAAGGACCTGATGGAACACTTATCCATGATAGTTCTTATGTGGGAGAGGATGCATGGGATGATGATCCGCAGCTGCCTCAGGACAATGTAAAACAATTTATTGACAGTGATATAAAATTAAATCCAGAAGAAAAGAAGGAATTGAAAGAAGACCTGGGAATTTCTGGTGAAGTTCAAGAGGATACTGGAACATGGCGTGAAAGACTTCAAAAATGGAAGGAGATCCTCCAAAAAGAAAAGTTAGCGGAACAGTTGGACTCTGCAAATTCCAAGTATATAGTTGAATTTGACATGAAAGAGGTTGAAAACAGTCTTCGCAAGGATGTAGTGGAGAAGGTTGCTGCTGTTGTATTTACAGAAGACCTAAAAAGAATATATGTTACTATGAAAGAAGGTTTTCCATTAGAATATGTTTACATCGAAGAAACAGAAGAACTTGCGACAGAAGAACTTGAGATGAATGGTTTGAGAAACAACAGGCACATTCTGGACATGATTACTGAGGAACTACTAGAGAAGGATTACTGGGTTGGTAAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

350

Amino Acids

40.06

Weight (kDa)

5.3

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019735)

Species	Orthologous Gene IDs
malus_domestica	MD10G1209400.v1.1
rosa_multiflora	Rmu_sc0000084.1_g000041 Rmu_sc0000851.1_g000001 Rmu_sc0001307.1_g000022
rosa_roxburghii	Rroxscaffold_7G00195670
rosa_samantha	Rh6DG222600
rosa_wichuraiana	Rw1G017720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1051
AccB1I	GGYRCC	1 cut(s)	271
AciI	CCGC	3 cut(s)	33, 578, 755
AclI	AACGTT	1 cut(s)	222
AclWI	GGATC	2 cut(s)	569, 727
AcoI	YGGCCR	2 cut(s)	27, 53
AcsI	RAATTY	3 cut(s)	669, 775, 794
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	154
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	8 cut(s)	127, 199, 512, 655, 686, 719, 794, 815
AjnI	CCWGG	2 cut(s)	179, 663
AluBI	AGCT	5 cut(s)	23, 84, 362, 451, 583
AluI	AGCT	5 cut(s)	23, 84, 362, 451, 583
Alw21I	GWGCWC	1 cut(s)	364
AlwI	GGATC	2 cut(s)	569, 727
AoxI	GGCC	3 cut(s)	27, 53, 487
ApeKI	GCWGC	3 cut(s)	580, 583, 851
ApoI	RAATTY	3 cut(s)	669, 775, 794
Asp700I	GAANNNNTTC	2 cut(s)	714, 906
AspS9I	GGNCC	2 cut(s)	145, 515
AsuHPI	GGTGA	1 cut(s)	689
AsuNHI	GCTAGC	1 cut(s)	7
AvaII	GGWCC	2 cut(s)	145, 515
AxyI	CCTNAGG	1 cut(s)	588
BalI	TGGCCA	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	364
BbsI	GAAGAC	5 cut(s)	312, 479, 666, 815, 876
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	3 cut(s)	570, 592, 838
BccI	CCATC	2 cut(s)	436, 515
BciT130I	CCWGG	2 cut(s)	181, 665
BciVI	GTATCC	1 cut(s)	685
BclI	TGATCA	1 cut(s)	108
BfaI	CTAG	3 cut(s)	8, 491, 1022
BfmI	CTRYAG	1 cut(s)	324
BfrI	CTTAAG	1 cut(s)	452
BfuI	GTATCC	1 cut(s)	685
BisI	GCNGC	3 cut(s)	581, 584, 852
BlsI	GCNGC	3 cut(s)	582, 585, 853
Bme1390I	CCNGG	2 cut(s)	181, 665
Bme18I	GGWCC	2 cut(s)	145, 515
BmgT120I	GGNCC	2 cut(s)	145, 515
BmiI	GGNNCC	3 cut(s)	44, 273, 294
BmrFI	CCNGG	2 cut(s)	181, 665
BmrI	ACTGGG	1 cut(s)	1045
BmsI	GCATC	3 cut(s)	55, 468, 550
BmtI	GCTAGC	1 cut(s)	11
BmuI	ACTGGG	1 cut(s)	1045
BpiI	GAAGAC	5 cut(s)	312, 479, 666, 815, 876
Bpu10I	CCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	983
BsaBI	GATNNNNATC	2 cut(s)	107, 573
BsaJI	CCNNGG	2 cut(s)	180, 664
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse118I	RCCGGY	2 cut(s)	51, 55
Bse1I	ACTGG	3 cut(s)	234, 700, 1040
Bse21I	CCTNAGG	1 cut(s)	588
Bse8I	GATNNNNATC	2 cut(s)	107, 573
BseBI	CCWGG	2 cut(s)	181, 665
BseDI	CCNNGG	2 cut(s)	180, 664
BseGI	GGATG	3 cut(s)	565, 574, 838
BseJI	GATNNNNATC	2 cut(s)	107, 573
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	5 cut(s)	80, 90, 414, 602, 1002
BseNI	ACTGG	3 cut(s)	234, 700, 1040
BseRI	GAGGAG	2 cut(s)	167, 285
BseX3I	CGGCCG	1 cut(s)	53
BseXI	GCAGC	3 cut(s)	570, 592, 838
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	3 cut(s)	29, 55, 489
BshNI	GGYRCC	1 cut(s)	271
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	52, 56
BslI	CCNNNNNNNGG	1 cut(s)	154
BsnI	GGCC	3 cut(s)	29, 55, 489
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	4 cut(s)	108, 373, 574, 732
BspACI	CCGC	3 cut(s)	33, 578, 755
BspANI	GGCC	3 cut(s)	29, 55, 489
BspCNI	CTCAG	5 cut(s)	81, 91, 415, 601, 1003
BspLI	GGNNCC	3 cut(s)	44, 273, 294
BspOI	GCTAGC	1 cut(s)	11
BspPI	GGATC	2 cut(s)	569, 727
BspT107I	GGYRCC	1 cut(s)	271
BspTI	CTTAAG	1 cut(s)	452
BsrFI	RCCGGY	2 cut(s)	51, 55
BsrI	ACTGG	3 cut(s)	234, 700, 1040
BssAI	RCCGGY	2 cut(s)	51, 55
BssECI	CCNNGG	2 cut(s)	180, 664
BssMI	GATC	4 cut(s)	108, 373, 574, 732
Bst2UI	CCWGG	2 cut(s)	181, 665
Bst4CI	ACNGT	4 cut(s)	328, 617, 762, 821
Bst6I	CTCTTC	1 cut(s)	452
BstAFI	CTTAAG	1 cut(s)	452
BstC8I	GCNNGC	4 cut(s)	9, 31, 53, 86
BstDEI	CTNAG	5 cut(s)	89, 99, 423, 588, 1011
BstF5I	GGATG	3 cut(s)	565, 574, 838
BstKTI	GATC	4 cut(s)	111, 376, 577, 735
BstMBI	GATC	4 cut(s)	108, 373, 574, 732
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNI	CCWGG	2 cut(s)	181, 665
BstSCI	CCNGG	2 cut(s)	179, 663
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	3 cut(s)	570, 592, 838
BstV2I	GAAGAC	5 cut(s)	312, 479, 666, 815, 876
BstX2I	RGATCY	1 cut(s)	732
BstYI	RGATCY	1 cut(s)	732
BstZI	CGGCCG	1 cut(s)	53
Bsu36I	CCTNAGG	1 cut(s)	588
BsuI	GTATCC	1 cut(s)	685
BsuRI	GGCC	3 cut(s)	29, 55, 489
BtgZI	GCGATG	1 cut(s)	78
BtsCI	GGATG	3 cut(s)	565, 574, 838
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	3 cut(s)	241, 420, 622
Cac8I	GCNNGC	4 cut(s)	9, 31, 53, 86
Cfr10I	RCCGGY	2 cut(s)	51, 55
Cfr13I	GGNCC	2 cut(s)	145, 515
Csp6I	GTAC	1 cut(s)	115
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviAII	CATG	8 cut(s)	149, 289, 314, 536, 564, 702, 802, 1003
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	5 cut(s)	89, 99, 423, 588, 1011
DpnI	GATC	4 cut(s)	110, 375, 576, 734
DpnII	GATC	4 cut(s)	108, 373, 574, 732
EaeI	YGGCCR	2 cut(s)	27, 53
EagI	CGGCCG	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Ecl136II	GAGCTC	1 cut(s)	362
EclXI	CGGCCG	1 cut(s)	53
Eco147I	AGGCCT	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	364
Eco47I	GGWCC	2 cut(s)	145, 515
Eco52I	CGGCCG	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	362
Eco81I	CCTNAGG	1 cut(s)	588
EcoICRI	GAGCTC	1 cut(s)	362
EcoO109I	RGGNCCY	1 cut(s)	515
EcoRII	CCWGG	2 cut(s)	179, 663
EcoT22I	ATGCAT	1 cut(s)	565
EcoT38I	GRGCYC	1 cut(s)	364
FaeI	CATG	8 cut(s)	152, 292, 317, 539, 567, 705, 805, 1006
FatI	CATG	8 cut(s)	148, 288, 313, 535, 563, 701, 801, 1002
FauI	CCCGC	1 cut(s)	26
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	581, 584, 852
FokI	GGATG	3 cut(s)	572, 581, 845
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	3 cut(s)	581, 584, 852
FspBI	CTAG	3 cut(s)	8, 491, 1022
GluI	GCNGC	3 cut(s)	581, 584, 852
HaeIII	GGCC	3 cut(s)	29, 55, 489
HapII	CCGG	2 cut(s)	52, 56
Hin1II	CATG	8 cut(s)	152, 292, 317, 539, 567, 705, 805, 1006
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	3 cut(s)	266, 418, 767
HpaII	CCGG	2 cut(s)	52, 56
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	3 cut(s)	226, 393, 925
Hpy188I	TCNGA	4 cut(s)	100, 189, 265, 435
Hpy188III	TCNNGA	5 cut(s)	422, 590, 635, 686, 998
Hpy8I	GTNNAC	3 cut(s)	226, 393, 925
HpyAV	CCTTC	7 cut(s)	121, 506, 640, 721, 838, 896, 1021
HpyCH4III	ACNGT	4 cut(s)	328, 617, 762, 821
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	4 cut(s)	208, 286, 563, 773
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	5 cut(s)	89, 99, 423, 588, 1011
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	8 cut(s)	152, 292, 317, 539, 567, 705, 805, 1006
KroI	GCCGGC	1 cut(s)	51
KroNI	GCCGGC	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	4 cut(s)	108, 373, 574, 732
LmnI	GCTCC	5 cut(s)	20, 130, 166, 298, 367
Lsp1109I	GCAGC	3 cut(s)	570, 592, 838
LweI	GCATC	3 cut(s)	55, 468, 550
MaeI	CTAG	3 cut(s)	8, 491, 1022
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	889
MalI	GATC	4 cut(s)	110, 375, 576, 734
MboI	GATC	4 cut(s)	108, 373, 574, 732
MflI	RGATCY	1 cut(s)	732
MhlI	GDGCHC	1 cut(s)	364
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	7 cut(s)	354, 605, 626, 650, 669, 775, 794
MluNI	TGGCCA	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	761
MmeI	TCCRAC	2 cut(s)	123, 744
Mox20I	TGGCCA	1 cut(s)	29
Mph1103I	ATGCAT	1 cut(s)	565
MroNI	GCCGGC	1 cut(s)	51
MroXI	GAANNNNTTC	2 cut(s)	714, 906
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	2 cut(s)	453, 629
Msp20I	TGGCCA	1 cut(s)	29
MspA1I	CMGCKG	2 cut(s)	33, 583
MspCI	CTTAAG	1 cut(s)	452
MspI	CCGG	2 cut(s)	52, 56
MspR9I	CCNGG	2 cut(s)	181, 665
MvaI	CCWGG	2 cut(s)	181, 665
MwoI	GCNNNNNNNGC	1 cut(s)	359
NaeI	GCCGGC	1 cut(s)	53
NdeII	GATC	4 cut(s)	108, 373, 574, 732
NgoMIV	GCCGGC	1 cut(s)	51
NheI	GCTAGC	1 cut(s)	7
NlaIII	CATG	8 cut(s)	152, 292, 317, 539, 567, 705, 805, 1006
NlaIV	GGNNCC	3 cut(s)	44, 273, 294
NsiI	ATGCAT	1 cut(s)	565
PceI	AGGCCT	1 cut(s)	489
PdiI	GCCGGC	1 cut(s)	53
PdmI	GAANNNNTTC	2 cut(s)	714, 906
PfeI	GAWTC	2 cut(s)	266, 418
PkrI	GCNGC	3 cut(s)	582, 585, 853
PleI	GAGTC	1 cut(s)	761
PpsI	GAGTC	1 cut(s)	761
PpuMI	RGGWCCY	1 cut(s)	515
PsiI	TTATAA	1 cut(s)	1051
Psp124BI	GAGCTC	1 cut(s)	364
Psp1406I	AACGTT	1 cut(s)	222
Psp5II	RGGWCCY	1 cut(s)	515
Psp6I	CCWGG	2 cut(s)	179, 663
PspGI	CCWGG	2 cut(s)	179, 663
PspN4I	GGNNCC	3 cut(s)	44, 273, 294
PspPI	GGNCC	2 cut(s)	145, 515
PspPPI	RGGWCCY	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	732
PvuII	CAGCTG	1 cut(s)	583
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SacI	GAGCTC	1 cut(s)	364
SaqAI	TTAA	2 cut(s)	453, 629
SatI	GCNGC	3 cut(s)	581, 584, 852
Sau3AI	GATC	4 cut(s)	108, 373, 574, 732
Sau96I	GGNCC	2 cut(s)	145, 515
SchI	GAGTC	1 cut(s)	761
ScrFI	CCNGG	2 cut(s)	181, 665
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	3 cut(s)	55, 468, 550
SfcI	CTRYAG	1 cut(s)	324
SinI	GGWCC	2 cut(s)	145, 515
SmlI	CTYRAG	2 cut(s)	452, 962
SmoI	CTYRAG	2 cut(s)	452, 962
Sse9I	AATT	7 cut(s)	354, 605, 626, 650, 669, 775, 794
SseBI	AGGCCT	1 cut(s)	489
SsiI	CCGC	3 cut(s)	33, 578, 755
SspMI	CTAG	3 cut(s)	8, 491, 1022
SstI	GAGCTC	1 cut(s)	364
StuI	AGGCCT	1 cut(s)	489
StyD4I	CCNGG	2 cut(s)	179, 663
TaaI	ACNGT	4 cut(s)	328, 617, 762, 821
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	3 cut(s)	215, 358, 930
TasI	AATT	7 cut(s)	354, 605, 626, 650, 669, 775, 794
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	2 cut(s)	266, 418
Tru1I	TTAA	2 cut(s)	453, 629
Tru9I	TTAA	2 cut(s)	453, 629
TscAI	CASTG	3 cut(s)	241, 420, 622
TseI	GCWGC	3 cut(s)	580, 583, 851
TspDTI	ATGAA	4 cut(s)	512, 818, 911, 983
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	3 cut(s)	241, 420, 622
Vha464I	CTTAAG	1 cut(s)	452
VpaK11BI	GGWCC	2 cut(s)	145, 515
XapI	RAATTY	3 cut(s)	669, 775, 794
XmnI	GAANNNNTTC	2 cut(s)	714, 906
XspI	CTAG	3 cut(s)	8, 491, 1022
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.