Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001307.1

Orthogroup ID

OG0019735

Physical Location & Seq

Genomic Coordinates Reverse (-)

136476 .. 137822

Gene Structure 1347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001307.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggaggcagtgattcctgagccatctccgagtaatgttagaaagcttaagaagagtatgtggaggaagacgacgcccaaaggcctgaaaatgaagaagtttgttgaaggacctgatggaacacttgtccatgatagttcttatgtgggagaggatgcatgggatgatgatccgcagctgcctcaggacaatgtaaaacaatttattgacagtgatataaaattaaatccagaagaaaagaaggaattgaaagaagacctgggaatttctggtgaagttcaagaggatactggaacatggcgtgaaagacttcagaaatggaaggagatcctccaaaaagaaaagttagcggaacagttggactctgcaaattccaagtatgtagttgaatttgacatgaaagaggttgaaaacagtcttcgcaaggatgtagtggagaaggtaacagagacacaaggaaaaaggcgttatggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

158

Amino Acids

18.29

Weight (kDa)

5.29

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019735)

Species	Orthologous Gene IDs
malus_domestica	MD10G1209400.v1.1
rosa_multiflora	Rmu_sc0000084.1_g000041 Rmu_sc0000851.1_g000001 Rmu_sc0001307.1_g000022
rosa_roxburghii	Rroxscaffold_7G00195670
rosa_samantha	Rh6DG222600
rosa_wichuraiana	Rw1G017720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	173, 350
AclWI	GGATC	2 cut(s)	164, 322
AcsI	RAATTY	3 cut(s)	264, 370, 389
AcuI	CTGAAG	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	74
AflII	CTTAAG	1 cut(s)	47
AgsI	TTSAA	5 cut(s)	107, 250, 281, 389, 410
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	2 cut(s)	46, 178
AluI	AGCT	2 cut(s)	46, 178
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	2 cut(s)	164, 322
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	2 cut(s)	175, 178
ApoI	RAATTY	3 cut(s)	264, 370, 389
Asp700I	GAANNNNTTC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	110
AxyI	CCTNAGG	1 cut(s)	183
BbsI	GAAGAC	3 cut(s)	74, 261, 410
BbvI	GCAGC	2 cut(s)	165, 187
BccI	CCATC	2 cut(s)	31, 110
BciT130I	CCWGG	1 cut(s)	260
BciVI	GTATCC	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	443
BfrI	CTTAAG	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	280
BisI	GCNGC	2 cut(s)	176, 179
BlsI	GCNGC	2 cut(s)	177, 180
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	145
BpiI	GAAGAC	3 cut(s)	74, 261, 410
Bpu10I	CCTNAGC	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	295
Bse21I	CCTNAGG	1 cut(s)	183
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	3 cut(s)	160, 169, 433
BseJI	GATNNNNATC	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	9, 197
BseNI	ACTGG	1 cut(s)	295
BseXI	GCAGC	2 cut(s)	165, 187
BshFI	GGCC	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	443
BsnI	GGCC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	169, 327
BspACI	CCGC	2 cut(s)	173, 350
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	2 cut(s)	10, 196
BspPI	GGATC	2 cut(s)	164, 322
BspTI	CTTAAG	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	2 cut(s)	169, 327
BssNI	GRCGYC	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	3 cut(s)	212, 357, 416
Bst6I	CTCTTC	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	74
BstAFI	CTTAAG	1 cut(s)	47
BstDEI	CTNAG	2 cut(s)	18, 183
BstF5I	GGATG	3 cut(s)	160, 169, 433
BstKTI	GATC	2 cut(s)	172, 330
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	2 cut(s)	169, 327
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstV1I	GCAGC	2 cut(s)	165, 187
BstV2I	GAAGAC	3 cut(s)	74, 261, 410
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
Bsu36I	CCTNAGG	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	84
BtsCI	GGATG	3 cut(s)	160, 169, 433
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	15, 217
Cfr13I	GGNCC	1 cut(s)	110
CseI	GACGC	1 cut(s)	82
CviAII	CATG	4 cut(s)	131, 159, 297, 397
CviJI	RGCY	4 cut(s)	22, 46, 84, 178
CviKI_1	RGCY	4 cut(s)	22, 46, 84, 178
DdeI	CTNAG	2 cut(s)	18, 183
DpnI	GATC	2 cut(s)	171, 329
DpnII	GATC	2 cut(s)	169, 327
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco147I	AGGCCT	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	296
Eco81I	CCTNAGG	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	160
FaeI	CATG	4 cut(s)	134, 162, 300, 400
FaiI	YATR	9 cut(s)	59, 132, 144, 160, 218, 298, 381, 398, 471
FatI	CATG	4 cut(s)	130, 158, 296, 396
Fnu4HI	GCNGC	2 cut(s)	176, 179
FokI	GGATG	3 cut(s)	167, 176, 440
Fsp4HI	GCNGC	2 cut(s)	176, 179
GluI	GCNGC	2 cut(s)	176, 179
HaeIII	GGCC	1 cut(s)	84
HgaI	GACGC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	4 cut(s)	134, 162, 300, 400
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	2 cut(s)	13, 362
HphI	GGTGA	1 cut(s)	284
Hpy188I	TCNGA	2 cut(s)	30, 315
Hpy188III	TCNNGA	4 cut(s)	17, 185, 230, 281
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	4 cut(s)	101, 235, 316, 433
HpyCH4III	ACNGT	3 cut(s)	212, 357, 416
HpyCH4V	TGCA	2 cut(s)	158, 368
HpyF3I	CTNAG	2 cut(s)	18, 183
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	4 cut(s)	134, 162, 300, 400
Kzo9I	GATC	2 cut(s)	169, 327
LpnPI	CCDG	9 cut(s)	30, 98, 126, 170, 243, 245, 255, 272, 276
Lsp1109I	GCAGC	2 cut(s)	165, 187
LweI	GCATC	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	2 cut(s)	171, 329
MboI	GATC	2 cut(s)	169, 327
MboII	GAAGA	6 cut(s)	64, 79, 106, 245, 266, 410
MflI	RGATCY	1 cut(s)	327
MluCI	AATT	6 cut(s)	200, 221, 245, 264, 370, 389
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	6 cut(s)	57, 145, 192, 277, 341, 397
Mph1103I	ATGCAT	1 cut(s)	160
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	2 cut(s)	48, 224
MspA1I	CMGCKG	1 cut(s)	178
MspCI	CTTAAG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
NdeII	GATC	2 cut(s)	169, 327
NlaIII	CATG	4 cut(s)	134, 162, 300, 400
NsiI	ATGCAT	1 cut(s)	160
PceI	AGGCCT	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	177, 180
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
PpuMI	RGGWCCY	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	110
PspPPI	RGGWCCY	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	327
PvuII	CAGCTG	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	48, 224
SatI	GCNGC	2 cut(s)	176, 179
Sau3AI	GATC	2 cut(s)	169, 327
Sau96I	GGNCC	1 cut(s)	110
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	260
SetI	ASST	6 cut(s)	48, 115, 180, 261, 408, 444
SfaNI	GCATC	1 cut(s)	145
SinI	GGWCC	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	6 cut(s)	200, 221, 245, 264, 370, 389
SseBI	AGGCCT	1 cut(s)	84
SsiI	CCGC	2 cut(s)	173, 350
StuI	AGGCCT	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	3 cut(s)	212, 357, 416
TasI	AATT	6 cut(s)	200, 221, 245, 264, 370, 389
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	2 cut(s)	48, 224
Tru9I	TTAA	2 cut(s)	48, 224
TscAI	CASTG	2 cut(s)	15, 217
TseI	GCWGC	2 cut(s)	175, 178
TspDTI	ATGAA	2 cut(s)	107, 413
TspRI	CASTG	2 cut(s)	15, 217
Vha464I	CTTAAG	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	3 cut(s)	264, 370, 389
XmnI	GAANNNNTTC	1 cut(s)	309
Zsp2I	ATGCAT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.