Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0019735

Physical Location & Seq

Genomic Coordinates Forward (+)

39254351 .. 39257840

Gene Structure 3490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G017720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTGGAGGAAGACGACGCCCAAAGGCCTGAAAGTGAAGAAGTTTGTTGAAGGACCTGATGGAACACTTGTCCATGATAGTTCTTTTGTGGGAGAGGATGCATGGGATGATGATCCGCAGCTGCCTCAGGACAATGTAGTGGACAACTTATTGATTTTAATGAGAATTATGTCTTTTAGTAAAAAAGGTGAAGTTCAAGAGGATACTGGAACATGGCGTGAAAGACTTCAGAAATGGAAGGAGATCCTCCAAAAAGAAAAGTTAGCGGAACAGTTGGACTCTGCAAATTCCAAGTATGTAGTTGAATTTGACATGAAAGAGGTTGAAAACAGTCTTCGCAAGGATGTAGTGGAGAAGGTTGCTGCTGTTGTATTTACAGAAGACCTAAAAAGAATATATGTTACTATGAAAGAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

139

Amino Acids

16.13

Weight (kDa)

5.17

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019735)

Species	Orthologous Gene IDs
malus_domestica	MD10G1209400.v1.1
rosa_multiflora	Rmu_sc0000084.1_g000041 Rmu_sc0000851.1_g000001 Rmu_sc0001307.1_g000022
rosa_roxburghii	Rroxscaffold_7G00195670
rosa_samantha	Rh6DG222600
rosa_wichuraiana	Rw1G017720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	116, 266
AclWI	GGATC	2 cut(s)	107, 238
AcsI	RAATTY	2 cut(s)	286, 305
AcuI	CTGAAG	1 cut(s)	212
AcyI	GRCGYC	1 cut(s)	17
AgsI	TTSAA	4 cut(s)	50, 197, 305, 326
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
AlwI	GGATC	2 cut(s)	107, 238
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	3 cut(s)	118, 121, 362
ApoI	RAATTY	2 cut(s)	286, 305
Asp700I	GAANNNNTTC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	53
AxyI	CCTNAGG	1 cut(s)	126
BbsI	GAAGAC	3 cut(s)	17, 326, 387
BbvI	GCAGC	3 cut(s)	108, 130, 349
BccI	CCATC	1 cut(s)	53
BciVI	GTATCC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	418
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	3 cut(s)	119, 122, 363
BlsI	GCNGC	3 cut(s)	120, 123, 364
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmsI	GCATC	1 cut(s)	88
BpiI	GAAGAC	3 cut(s)	17, 326, 387
BsaBI	GATNNNNATC	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	211
Bse21I	CCTNAGG	1 cut(s)	126
Bse8I	GATNNNNATC	1 cut(s)	111
BseGI	GGATG	3 cut(s)	103, 112, 349
BseJI	GATNNNNATC	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	211
BseXI	GCAGC	3 cut(s)	108, 130, 349
BshFI	GGCC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	112, 243
BspACI	CCGC	2 cut(s)	116, 266
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	139
BspPI	GGATC	2 cut(s)	107, 238
BsrI	ACTGG	1 cut(s)	211
BssMI	GATC	2 cut(s)	112, 243
BssNI	GRCGYC	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	273, 332
BstACI	GRCGYC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	3 cut(s)	103, 112, 349
BstKTI	GATC	2 cut(s)	115, 246
BstMBI	GATC	2 cut(s)	112, 243
BstV1I	GCAGC	3 cut(s)	108, 130, 349
BstV2I	GAAGAC	3 cut(s)	17, 326, 387
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
Bsu36I	CCTNAGG	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	27
BtsCI	GGATG	3 cut(s)	103, 112, 349
Cfr13I	GGNCC	1 cut(s)	53
CseI	GACGC	1 cut(s)	25
CviAII	CATG	4 cut(s)	74, 102, 213, 313
CviJI	RGCY	3 cut(s)	27, 121, 416
CviKI_1	RGCY	3 cut(s)	27, 121, 416
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	2 cut(s)	114, 245
DpnII	GATC	2 cut(s)	112, 243
Eco147I	AGGCCT	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	212
Eco81I	CCTNAGG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	53
EcoT22I	ATGCAT	1 cut(s)	103
FaeI	CATG	4 cut(s)	77, 105, 216, 316
FaiI	YATR	9 cut(s)	75, 103, 170, 214, 297, 314, 397, 399, 407
FatI	CATG	4 cut(s)	73, 101, 212, 312
Fnu4HI	GCNGC	3 cut(s)	119, 122, 363
FokI	GGATG	3 cut(s)	110, 119, 356
Fsp4HI	GCNGC	3 cut(s)	119, 122, 363
FspBI	CTAG	1 cut(s)	418
GluI	GCNGC	3 cut(s)	119, 122, 363
HaeIII	GGCC	1 cut(s)	27
HgaI	GACGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	4 cut(s)	77, 105, 216, 316
HinfI	GANTC	1 cut(s)	278
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	231
Hpy188III	TCNNGA	2 cut(s)	128, 197
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	3 cut(s)	44, 232, 349
HpyCH4III	ACNGT	2 cut(s)	273, 332
HpyCH4V	TGCA	2 cut(s)	101, 284
HpyF3I	CTNAG	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	4 cut(s)	77, 105, 216, 316
Kzo9I	GATC	2 cut(s)	112, 243
LpnPI	CCDG	4 cut(s)	41, 69, 113, 192
Lsp1109I	GCAGC	3 cut(s)	108, 130, 349
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	418
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	2 cut(s)	114, 245
MboI	GATC	2 cut(s)	112, 243
MboII	GAAGA	4 cut(s)	22, 49, 326, 392
MflI	RGATCY	1 cut(s)	243
MluCI	AATT	3 cut(s)	165, 286, 305
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	5 cut(s)	88, 135, 193, 257, 313
Mph1103I	ATGCAT	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	225
MseI	TTAA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	121
NdeII	GATC	2 cut(s)	112, 243
NlaIII	CATG	4 cut(s)	77, 105, 216, 316
NsiI	ATGCAT	1 cut(s)	103
PceI	AGGCCT	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	225
PkrI	GCNGC	3 cut(s)	120, 123, 364
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
PpuMI	RGGWCCY	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	53
PspPPI	RGGWCCY	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	243
PvuII	CAGCTG	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	3 cut(s)	119, 122, 363
Sau3AI	GATC	2 cut(s)	112, 243
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	272
SetI	ASST	6 cut(s)	58, 123, 190, 324, 360, 387
SfaNI	GCATC	1 cut(s)	88
SinI	GGWCC	1 cut(s)	53
Sse9I	AATT	3 cut(s)	165, 286, 305
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	2 cut(s)	116, 266
SspMI	CTAG	1 cut(s)	418
StuI	AGGCCT	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	273, 332
TasI	AATT	3 cut(s)	165, 286, 305
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TseI	GCWGC	3 cut(s)	118, 121, 362
TspDTI	ATGAA	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	2 cut(s)	286, 305
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	1 cut(s)	418
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.