MD10G1230000.v1.1

APO protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
32689678 .. 32693021
3344 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1230000.v1.1.491

Sequence Viewer

Length: 1332 bp
ATGTTCCAGAATCCTCCAACAGTATCCTCTGCTTTGTGGGAGCCATATCCGAAAGGTGCTTGCCTCTGTATCGATGAGTTCAAGTTGCCTCAGTTATCAGCTGCAAGATCGTACAGTCTTGGGTTGAAGTTTGAGCATGGAAAACTTCATAAAGGCGGAAGTATATTTGGGACTATCTTTGCTGCCAGTAGGAAGACCAGAGTAGAACCAACTTCTAGGAAGCGAGAAGCATATCCCCAGAATGTGGATCTTCCACCTGTGCTACCTAAGAATAAGAAGAAACCGTATCCTATTCCCTTAAAGAAGATCAAGCAGTTCGCAAAGGATGACAAGAAACTTGAAGAATTGGGTATAGAGAAGCCCCTTGAACCTCCAAAAAATGGATTACTTGCCACTGATCTGATTCCTGTTGCTCACCAAGTACTAGATTCCTGGAAAGTTTTAATTAAAGGCATGGCGCAGCTGTTGCACGTCATTCCTGTATACGGATGCACTGAATGCTCTGAGGTTCATGTAAGCCACTCTGGTCATCACATACAGGACTGTCTTGGTTCAACTAGTGCTAAACGCCGAAGCTTCCACTCCTGGATCAAGGGTTCCATCAATGACGTACTTGTACCCATCGAGGCATATCATCTCTTTGACCCTTTTGGTCGACGCATTAAGCATGAAACTAGATTTCAATACGACAGGATTCCAGCTGTTGTGGAGCTGTGCATCCAAGCTGGTGTTGAGATCCCCGAGTACCCTTCACGTCGAAGGACCAAACCCATCCGGATGATTGGAAGGAAAGTGATAGATCGAGGTGGATTGCTAGAGGAGCCTCAACCAGGGTGCTCTGCAGATCCATCTTCCCTTGTTGATCTCGACACACATGGGGCTTGTGAGCGGTTTCCACCTCCACTGCCAACGGATATTCCCAGGATTGCACAGGATACAATGGATGCATATGAAACTGTTAGGTTGGGGGTGACAAAGCTGATGAAGAAATACACTGTGAAGGCATGCGGGTATTGCTCCGAGGTTCATGTGGGACCTTGGGGTCACAATGCAAAGCTTTGTGGGGAATTCAAGCACCAATGGAGGGATGGGAAGCATGGCTGGCAGGATGCTACCGTGGACGAGGTTTTACCTCCAAATTATGTATGGCACGTCGAAGACCCCAAAGGGCCTCCACTGAAGGGCGGTGCACTCAAGAAGTTCTACGGGAAGGCTCCTGCAGTGGTAGAGGTTTGCTTGCAGGCAGGTGCACGGATCCCTGAGAAATATAAACCCATGATGAGGCTTGACATTGTAGTCCCTAAAAGTGAGGAGGCACAATTAGTTGCCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

444

Amino Acids

49.6

Weight (kDa)

9.11

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
APO_RNA-bind PF05634 72 - 267 5.5e-102 APO RNA-binding
APO_RNA-bind PF05634 308 - 421 7.4e-22 APO RNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020141)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1235
AasI GACNNNNNNGTC 2 cut(s) 1041, 1295
Acc36I ACCTGC 1 cut(s) 1235
AccB7I CCANNNNNTGG 2 cut(s) 244, 380
AccBSI CCGCTC 1 cut(s) 889
AccI GTMKAC 2 cut(s) 483, 655
AccIII TCCGGA 1 cut(s) 774
AciI CCGC 4 cut(s) 156, 889, 1008, 1185
AclWI GGATC 6 cut(s) 255, 596, 730, 839, 1249, 1262
AcsI RAATTY 1 cut(s) 1067
AcuI CTGAAG 1 cut(s) 1199
AfaI GTAC 5 cut(s) 113, 423, 612, 618, 746
AfiI CCNNNNNNNGG 7 cut(s) 244, 380, 485, 830, 1084, 1181, 1281
AgsI TTSAA 7 cut(s) 82, 127, 341, 368, 555, 683, 1072
AhlI ACTAGT 1 cut(s) 557
AjiI CACGTC 3 cut(s) 472, 755, 1153
AjnI CCWGG 4 cut(s) 431, 584, 829, 920
AloI GAACNNNNNNTCC 2 cut(s) 580, 612
AluBI AGCT 8 cut(s) 101, 463, 576, 701, 712, 725, 979, 1057
AluI AGCT 8 cut(s) 101, 463, 576, 701, 712, 725, 979, 1057
Alw21I GWGCWC 3 cut(s) 839, 1192, 1252
Alw44I GTGCAC 2 cut(s) 1188, 1248
AlwI GGATC 6 cut(s) 255, 596, 730, 839, 1249, 1262
Ama87I CYCGRG 1 cut(s) 740
Aor13HI TCCGGA 1 cut(s) 774
AoxI GGCC 1 cut(s) 1169
ApaLI GTGCAC 2 cut(s) 1188, 1248
ApeKI GCWGC 3 cut(s) 101, 182, 460
ApoI RAATTY 1 cut(s) 1067
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 3 cut(s) 762, 1034, 1169
AsuHPI GGTGA 2 cut(s) 407, 982
AvaI CYCGRG 1 cut(s) 740
AvaII GGWCC 2 cut(s) 762, 1034
BaeGI GKGCMC 2 cut(s) 1192, 1252
BamHI GGATCC 1 cut(s) 1254
BbsI GAAGAC 2 cut(s) 200, 1164
Bbv12I GWGCWC 3 cut(s) 839, 1192, 1252
BbvI GCAGC 3 cut(s) 88, 169, 472
BccI CCATC 5 cut(s) 608, 629, 779, 856, 1082
BciT130I CCWGG 4 cut(s) 433, 586, 831, 922
BciVI GTATCC 3 cut(s) 34, 297, 928
BcuI ACTAGT 1 cut(s) 557
BfaI CTAG 5 cut(s) 216, 425, 558, 675, 815
BfmI CTRYAG 2 cut(s) 840, 1218
BfuAI ACCTGC 1 cut(s) 1235
BfuI GTATCC 3 cut(s) 34, 297, 928
BisI GCNGC 3 cut(s) 102, 183, 461
BlsI GCNGC 3 cut(s) 103, 184, 462
BmcAI AGTACT 1 cut(s) 423
Bme1390I CCNGG 4 cut(s) 433, 586, 831, 922
Bme18I GGWCC 2 cut(s) 762, 1034
BmeT110I CYCGRG 1 cut(s) 740
BmgBI CACGTC 3 cut(s) 472, 755, 1153
BmgT120I GGNCC 3 cut(s) 762, 1034, 1169
BmiI GGNNCC 6 cut(s) 42, 598, 822, 1035, 1215, 1256
BmrFI CCNGG 4 cut(s) 433, 586, 831, 922
BmsI GCATC 4 cut(s) 479, 726, 934, 1099
BpiI GAAGAC 2 cut(s) 200, 1164
BpuEI CTTGAG 1 cut(s) 1178
Bsa29I ATCGAT 1 cut(s) 72
BsaJI CCNNGG 5 cut(s) 830, 920, 1020, 1037, 1116
BsaWI WCCGGW 1 cut(s) 774
Bsc4I CCNNNNNNNGG 7 cut(s) 244, 380, 485, 830, 1084, 1181, 1281
Bse1I ACTGG 1 cut(s) 186
BseAI TCCGGA 1 cut(s) 774
BseBI CCWGG 4 cut(s) 433, 586, 831, 922
BseCI ATCGAT 1 cut(s) 72
BseDI CCNNGG 5 cut(s) 830, 920, 1020, 1037, 1116
BseGI GGATG 8 cut(s) 331, 494, 717, 771, 783, 949, 1093, 1114
BseLI CCNNNNNNNGG 7 cut(s) 244, 380, 485, 830, 1084, 1181, 1281
BseMII CTCAG 3 cut(s) 104, 495, 1251
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 2 cut(s) 833, 1325
BseSI GKGCMC 2 cut(s) 1192, 1252
BseXI GCAGC 3 cut(s) 88, 169, 472
BshFI GGCC 1 cut(s) 1171
BshVI ATCGAT 1 cut(s) 72
BsiHKAI GWGCWC 3 cut(s) 839, 1192, 1252
BsiHKCI CYCGRG 1 cut(s) 740
BsiSI CCGG 1 cut(s) 775
BslFI GGGAC 3 cut(s) 184, 1047, 1283
BslI CCNNNNNNNGG 7 cut(s) 244, 380, 485, 830, 1084, 1181, 1281
BsmFI GGGAC 3 cut(s) 184, 1047, 1283
BsmI GAATGC 1 cut(s) 503
BsnI GGCC 1 cut(s) 1171
BsoBI CYCGRG 1 cut(s) 740
Bsp1286I GDGCHC 3 cut(s) 839, 1192, 1252
Bsp13I TCCGGA 1 cut(s) 774
BspACI CCGC 4 cut(s) 156, 889, 1008, 1185
BspANI GGCC 1 cut(s) 1171
BspCNI CTCAG 3 cut(s) 103, 496, 1252
BspDI ATCGAT 1 cut(s) 72
BspEI TCCGGA 1 cut(s) 774
BspLI GGNNCC 6 cut(s) 42, 598, 822, 1035, 1215, 1256
BspMAI CTGCAG 2 cut(s) 844, 1222
BspMI ACCTGC 1 cut(s) 1235
BspPI GGATC 6 cut(s) 255, 596, 730, 839, 1249, 1262
BsrBI CCGCTC 1 cut(s) 889
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 5 cut(s) 830, 920, 1020, 1037, 1116
BssNAI GTATAC 1 cut(s) 484
BssT1I CCWWGG 1 cut(s) 1037
Bst1107I GTATAC 1 cut(s) 484
Bst2UI CCWGG 4 cut(s) 433, 586, 831, 922
Bst4CI ACNGT 7 cut(s) 22, 116, 285, 545, 958, 997, 1117
BstAPI GCANNNNNTGC 2 cut(s) 466, 498
BstC8I GCNNGC 5 cut(s) 61, 1006, 1103, 1238, 1242
BstDEI CTNAG 4 cut(s) 90, 267, 504, 1260
BstDSI CCRYGG 1 cut(s) 1116
BstENI CCTNNNNNAGG 1 cut(s) 828
BstF5I GGATG 8 cut(s) 331, 494, 717, 771, 783, 949, 1093, 1114
BstHHI GCGC 1 cut(s) 460
BstMWI GCNNNNNNNGC 5 cut(s) 466, 498, 820, 1014, 1102
BstNI CCWGG 4 cut(s) 433, 586, 831, 922
BstNSI RCATGY 1 cut(s) 1008
BstSCI CCNGG 4 cut(s) 431, 584, 829, 920
BstSFI CTRYAG 2 cut(s) 840, 1218
BstSLI GKGCMC 2 cut(s) 1192, 1252
BstV1I GCAGC 3 cut(s) 88, 169, 472
BstV2I GAAGAC 2 cut(s) 200, 1164
BstX2I RGATCY 4 cut(s) 247, 735, 844, 1254
BstYI RGATCY 4 cut(s) 247, 735, 844, 1254
BstZ17I GTATAC 1 cut(s) 484
Bsu15I ATCGAT 1 cut(s) 72
BsuI GTATCC 3 cut(s) 34, 297, 928
BsuRI GGCC 1 cut(s) 1171
BsuTUI ATCGAT 1 cut(s) 72
BtgI CCRYGG 1 cut(s) 1116
BtrI CACGTC 3 cut(s) 472, 755, 1153
BtsCI GGATG 8 cut(s) 331, 494, 717, 771, 783, 949, 1093, 1114
BtsI GCAGTG 2 cut(s) 902, 1227
BtsIMutI CAGTG 6 cut(s) 393, 492, 902, 993, 1175, 1227
BveI ACCTGC 1 cut(s) 1235
Cac8I GCNNGC 5 cut(s) 61, 1006, 1103, 1238, 1242
CfoI GCGC 1 cut(s) 460
Cfr13I GGNCC 3 cut(s) 762, 1034, 1169
ClaI ATCGAT 1 cut(s) 72
CseI GACGC 1 cut(s) 666
Csp6I GTAC 5 cut(s) 112, 422, 611, 617, 745
CviAII CATG 9 cut(s) 137, 454, 512, 668, 875, 1005, 1028, 1097, 1276
CviQI GTAC 5 cut(s) 112, 422, 611, 617, 745
DdeI CTNAG 4 cut(s) 90, 267, 504, 1260
DrdI GACNNNNNNGTC 2 cut(s) 1041, 1295
DseDI GACNNNNNNGTC 2 cut(s) 1041, 1295
EciI GGCGGA 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 1037
Eco47I GGWCC 2 cut(s) 762, 1034
Eco57I CTGAAG 1 cut(s) 1199
Eco88I CYCGRG 1 cut(s) 740
EcoNI CCTNNNNNAGG 1 cut(s) 828
EcoO109I RGGNCCY 2 cut(s) 1034, 1169
EcoRI GAATTC 1 cut(s) 1067
EcoRII CCWGG 4 cut(s) 431, 584, 829, 920
EcoT14I CCWWGG 1 cut(s) 1037
EcoT22I ATGCAT 1 cut(s) 949
ErhI CCWWGG 1 cut(s) 1037
FaeI CATG 9 cut(s) 140, 457, 515, 671, 878, 1008, 1031, 1100, 1279
FaqI GGGAC 3 cut(s) 184, 1047, 1283
FatI CATG 9 cut(s) 136, 453, 511, 667, 874, 1004, 1027, 1096, 1275
FauI CCCGC 1 cut(s) 1001
FauNDI CATATG 1 cut(s) 949
FblI GTMKAC 2 cut(s) 483, 655
Fnu4HI GCNGC 3 cut(s) 102, 183, 461
FokI GGATG 8 cut(s) 338, 501, 704, 758, 790, 956, 1100, 1121
Fsp4HI GCNGC 3 cut(s) 102, 183, 461
FspBI CTAG 5 cut(s) 216, 425, 558, 675, 815
GlaI GCGC 1 cut(s) 459
GluI GCNGC 3 cut(s) 102, 183, 461
HaeIII GGCC 1 cut(s) 1171
HapII CCGG 1 cut(s) 775
HgaI GACGC 1 cut(s) 666
HhaI GCGC 1 cut(s) 460
Hin1II CATG 9 cut(s) 140, 457, 515, 671, 878, 1008, 1031, 1100, 1279
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HincII GTYRAC 1 cut(s) 656
HindII GTYRAC 1 cut(s) 656
HindIII AAGCTT 2 cut(s) 574, 1055
HinfI GANTC 4 cut(s) 10, 403, 428, 694
HpaII CCGG 1 cut(s) 775
HphI GGTGA 2 cut(s) 407, 982
Hpy166II GTNNAC 5 cut(s) 484, 656, 1120, 1190, 1250
Hpy188I TCNGA 4 cut(s) 51, 402, 505, 1021
Hpy188III TCNNGA 4 cut(s) 7, 775, 866, 1195
Hpy8I GTNNAC 5 cut(s) 484, 656, 1120, 1190, 1250
Hpy99I CGWCG 3 cut(s) 660, 759, 1157
HpyAV CCTTC 6 cut(s) 753, 759, 780, 994, 1174, 1204
HpyCH4III ACNGT 7 cut(s) 22, 116, 285, 545, 958, 997, 1117
HpyCH4IV ACGT 4 cut(s) 471, 609, 754, 1152
HpyF10VI GCNNNNNNNGC 5 cut(s) 466, 498, 820, 1014, 1102
HpyF3I CTNAG 4 cut(s) 90, 267, 504, 1260
HpySE526I ACGT 4 cut(s) 471, 609, 754, 1152
Hsp92II CATG 9 cut(s) 140, 457, 515, 671, 878, 1008, 1031, 1100, 1279
HspAI GCGC 1 cut(s) 458
Kpn2I TCCGGA 1 cut(s) 774
LmnI GCTCC 5 cut(s) 40, 709, 820, 1022, 1219
Lsp1109I GCAGC 3 cut(s) 88, 169, 472
LweI GCATC 4 cut(s) 479, 726, 934, 1099
MaeI CTAG 5 cut(s) 216, 425, 558, 675, 815
MaeII ACGT 4 cut(s) 471, 609, 754, 1152
MaeIII GTNAC 2 cut(s) 970, 1043
MbiI CCGCTC 1 cut(s) 889
MboII GAAGA 8 cut(s) 205, 242, 289, 316, 353, 843, 997, 1169
MflI RGATCY 4 cut(s) 247, 735, 844, 1254
MhlI GDGCHC 3 cut(s) 839, 1192, 1252
MluCI AATT 5 cut(s) 344, 444, 1067, 1138, 1319
MmeI TCCRAC 1 cut(s) 41
Mph1103I ATGCAT 1 cut(s) 949
MroI TCCGGA 1 cut(s) 774
MseI TTAA 4 cut(s) 299, 443, 447, 663
MslI CAYNNNNRTG 1 cut(s) 776
MspA1I CMGCKG 3 cut(s) 101, 463, 701
MspI CCGG 1 cut(s) 775
MspR9I CCNGG 4 cut(s) 433, 586, 831, 922
Mva1269I GAATGC 1 cut(s) 503
MvaI CCWGG 4 cut(s) 433, 586, 831, 922
MwoI GCNNNNNNNGC 5 cut(s) 466, 498, 820, 1014, 1102
NdeI CATATG 1 cut(s) 949
NlaIII CATG 9 cut(s) 140, 457, 515, 671, 878, 1008, 1031, 1100, 1279
NlaIV GGNNCC 6 cut(s) 42, 598, 822, 1035, 1215, 1256
NmuCI GTSAC 2 cut(s) 970, 1043
NsiI ATGCAT 1 cut(s) 949
NspI RCATGY 1 cut(s) 1008
PacI TTAATTAA 1 cut(s) 447
PaeI GCATGC 1 cut(s) 1008
PaqCI CACCTGC 1 cut(s) 1235
PctI GAATGC 1 cut(s) 503
PfeI GAWTC 4 cut(s) 10, 403, 428, 694
PflMI CCANNNNNTGG 2 cut(s) 244, 380
PfoI TCCNGGA 2 cut(s) 431, 584
PkrI GCNGC 3 cut(s) 103, 184, 462
PpuMI RGGWCCY 1 cut(s) 1034
Psp5II RGGWCCY 1 cut(s) 1034
Psp6I CCWGG 4 cut(s) 431, 584, 829, 920
PspGI CCWGG 4 cut(s) 431, 584, 829, 920
PspN4I GGNNCC 6 cut(s) 42, 598, 822, 1035, 1215, 1256
PspPI GGNCC 3 cut(s) 762, 1034, 1169
PspPPI RGGWCCY 1 cut(s) 1034
PstI CTGCAG 2 cut(s) 844, 1222
PsuI RGATCY 4 cut(s) 247, 735, 844, 1254
PvuII CAGCTG 3 cut(s) 101, 463, 701
RsaI GTAC 5 cut(s) 113, 423, 612, 618, 746
RsaNI GTAC 5 cut(s) 112, 422, 611, 617, 745
RseI CAYNNNNRTG 1 cut(s) 776
SalI GTCGAC 1 cut(s) 654
SaqAI TTAA 4 cut(s) 299, 443, 447, 663
SatI GCNGC 3 cut(s) 102, 183, 461
Sau96I GGNCC 3 cut(s) 762, 1034, 1169
ScaI AGTACT 1 cut(s) 423
ScrFI CCNGG 4 cut(s) 433, 586, 831, 922
SduI GDGCHC 3 cut(s) 839, 1192, 1252
SfaNI GCATC 4 cut(s) 479, 726, 934, 1099
SfcI CTRYAG 2 cut(s) 840, 1218
SinI GGWCC 2 cut(s) 762, 1034
SmiMI CAYNNNNRTG 1 cut(s) 776
SmlI CTYRAG 1 cut(s) 1193
SmoI CTYRAG 1 cut(s) 1193
SpeI ACTAGT 1 cut(s) 557
SphI GCATGC 1 cut(s) 1008
Sse9I AATT 5 cut(s) 344, 444, 1067, 1138, 1319
SsiI CCGC 4 cut(s) 156, 889, 1008, 1185
SspMI CTAG 5 cut(s) 216, 425, 558, 675, 815
StyD4I CCNGG 4 cut(s) 431, 584, 829, 920
StyI CCWWGG 1 cut(s) 1037
TaaI ACNGT 7 cut(s) 22, 116, 285, 545, 958, 997, 1117
TaiI ACGT 4 cut(s) 474, 612, 757, 1155
TaqI TCGA 7 cut(s) 72, 624, 655, 757, 802, 867, 1155
TasI AATT 5 cut(s) 344, 444, 1067, 1138, 1319
TatI WGTACW 1 cut(s) 421
TfiI GAWTC 4 cut(s) 10, 403, 428, 694
Tru1I TTAA 4 cut(s) 299, 443, 447, 663
Tru9I TTAA 4 cut(s) 299, 443, 447, 663
TscAI CASTG 6 cut(s) 400, 499, 909, 1000, 1182, 1227
TseFI GTSAC 2 cut(s) 970, 1043
TseI GCWGC 3 cut(s) 101, 182, 460
Tsp45I GTSAC 2 cut(s) 970, 1043
TspDTI ATGAA 6 cut(s) 137, 500, 684, 966, 998, 1016
TspGWI ACGGA 3 cut(s) 501, 926, 1267
TspRI CASTG 6 cut(s) 400, 499, 909, 1000, 1182, 1227
Van91I CCANNNNNTGG 2 cut(s) 244, 380
VneI GTGCAC 2 cut(s) 1188, 1248
VpaK11BI GGWCC 2 cut(s) 762, 1034
XagI CCTNNNNNAGG 1 cut(s) 828
XapI RAATTY 1 cut(s) 1067
XceI RCATGY 1 cut(s) 1008
XcmI CCANNNNNNNNNTGG 2 cut(s) 1085, 1143
XmiI GTMKAC 2 cut(s) 483, 655
XspI CTAG 5 cut(s) 216, 425, 558, 675, 815
ZrmI AGTACT 1 cut(s) 423
Zsp2I ATGCAT 1 cut(s) 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.