Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011841

Physical Location & Seq

Genomic Coordinates Reverse (-)

37393072 .. 37393314

Gene Structure 243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1283600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGAGCTGCTGCTGCGGAGACGATTGCGAATGCAGGCCGCTAGGGTTTCTCCTCGGCCTGCCCTTCGCCTTCGTCGCTCTCATCCTCTCCGTCATCGGTGTCGTCATCTGGATCGTCGGGTTGGCGTTGACTTGCATATGTCCGTGCTGCTTGTGCGTGACGATCATAGTTGAGTTTGCTCTGGCCTTGATCAAGCTTCCCTTTTCGATCATGAAGTGGTTCACATCTAAGATTCCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

81

Amino Acids

8.66

Weight (kDa)

5.95

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20562
malus_domestica	MD05G1304200.v1.1 MD10G1283600.v1.1 MD17G1241600.v1.1
prunus_persica	Prupe.4G058200_v2.0.a1 Prupe.5G004400_v2.0.a1
pyrus_communis	pycom05g28150 pycom17g24470
rosa_chinensis	RchiOBHm_Chr2g0127121 RchiOBHm_Chr5g0010171
rosa_multiflora	Rmu_sc0000818.1_g000008 Rmu_sc0008093.1_g000006
rosa_roxburghii	Rroxscaffold_2G00115780
rosa_samantha	Rh2AG327800 Rh2BG337800 Rh2CG314900 Rh5BG075000
rosa_wichuraiana	Rw2G026590 Rw5G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	15, 38
AclWI	GGATC	1 cut(s)	119
AluBI	AGCT	2 cut(s)	6, 196
AluI	AGCT	2 cut(s)	6, 196
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	3 cut(s)	35, 55, 183
ApeKI	GCWGC	4 cut(s)	6, 9, 12, 147
Asp700I	GAANNNNTTC	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	134
BclI	TGATCA	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	41
BisI	GCNGC	5 cut(s)	7, 10, 13, 38, 148
BlsI	GCNGC	5 cut(s)	8, 11, 14, 39, 149
BsaJI	CCNNGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	134
BshFI	GGCC	3 cut(s)	37, 57, 185
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	3 cut(s)	37, 57, 185
Bsp143I	GATC	4 cut(s)	111, 162, 189, 207
BspACI	CCGC	2 cut(s)	15, 38
BspANI	GGCC	3 cut(s)	37, 57, 185
BspHI	TCATGA	1 cut(s)	210
BspPI	GGATC	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	4 cut(s)	111, 162, 189, 207
BstC8I	GCNNGC	2 cut(s)	35, 59
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	4 cut(s)	114, 165, 192, 210
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	4 cut(s)	111, 162, 189, 207
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 74, 153
BstV1I	GCAGC	1 cut(s)	134
BsuRI	GGCC	3 cut(s)	37, 57, 185
BtsCI	GGATG	1 cut(s)	81
Cac8I	GCNNGC	2 cut(s)	35, 59
CciI	TCATGA	1 cut(s)	210
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	5 cut(s)	6, 37, 57, 185, 196
CviKI_1	RGCY	5 cut(s)	6, 37, 57, 185, 196
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	4 cut(s)	113, 164, 191, 209
DpnII	GATC	4 cut(s)	111, 162, 189, 207
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	214
FaiI	YATR	4 cut(s)	137, 139, 167, 212
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	1 cut(s)	210
FauNDI	CATATG	1 cut(s)	137
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	5 cut(s)	7, 10, 13, 38, 148
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	5 cut(s)	7, 10, 13, 38, 148
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	5 cut(s)	7, 10, 13, 38, 148
HaeIII	GGCC	3 cut(s)	37, 57, 185
Hin1II	CATG	1 cut(s)	214
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	129, 222
Hpy188III	TCNNGA	2 cut(s)	109, 211
Hpy8I	GTNNAC	2 cut(s)	129, 222
Hpy99I	CGWCG	2 cut(s)	77, 119
HpyAV	CCTTC	2 cut(s)	73, 79
HpyCH4V	TGCA	2 cut(s)	33, 135
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 74, 153
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	4 cut(s)	111, 162, 189, 207
LpnPI	CCDG	4 cut(s)	19, 71, 94, 167
Lsp1109I	GCAGC	1 cut(s)	134
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	4 cut(s)	113, 164, 191, 209
MboI	GATC	4 cut(s)	111, 162, 189, 207
MnlI	CCTC	2 cut(s)	62, 95
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	1 cut(s)	241
Mva1269I	GAATGC	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	12, 74, 153
NdeI	CATATG	1 cut(s)	137
NdeII	GATC	4 cut(s)	111, 162, 189, 207
NlaIII	CATG	1 cut(s)	214
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	157
PagI	TCATGA	1 cut(s)	210
PctI	GAATGC	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	5 cut(s)	8, 11, 14, 39, 149
SaqAI	TTAA	1 cut(s)	241
SatI	GCNGC	5 cut(s)	7, 10, 13, 38, 148
Sau3AI	GATC	4 cut(s)	111, 162, 189, 207
SetI	ASST	2 cut(s)	8, 198
SsiI	CCGC	2 cut(s)	15, 38
SspMI	CTAG	1 cut(s)	41
TaqI	TCGA	1 cut(s)	206
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	241
Tru9I	TTAA	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	4 cut(s)	6, 9, 12, 147
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	2 cut(s)	79, 132
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.